Juan Ortiz Mateu
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ortizmateujuan.bsky.social
Juan Ortiz Mateu
@ortizmateujuan.bsky.social
PhD student at the @memprotlabuv.bsky.social - University of Valencia
Especially interested in the biogenesis of viral proteins.
Pinned
Happy to share an updated version of our work on the importance of the SARS-CoV-2 spike transmembrane domain in viral entry.

www.biorxiv.org/content/10.1...
www.biorxiv.org
Reposted by Juan Ortiz Mateu
Glushkova, Böhm, & Beck @maxplanck.de develop a publicly available computational method to measure the thickness of biological membranes in cryo-electron tomograms. Analysis of algae & human cells reveals systematic membrane thickness variations within & across organelles rupress.org/jcb/article/...
November 4, 2025 at 5:30 PM
Reposted by Juan Ortiz Mateu
Lipid bilayer thinning near a ubiquitin ligase selects ER membrane proteins for degradation www.biorxiv.org/content/10.1...
Lipid bilayer thinning near a ubiquitin ligase selects ER membrane proteins for degradation
Misfolded or unassembled membrane proteins in the endoplasmic reticulum (ER) are polyubiquitinated, translocated into the cytosol, and degraded by the proteasome, a poorly understood process that is c...
www.biorxiv.org
November 3, 2025 at 3:35 PM
Reposted by Juan Ortiz Mateu
Providing order amongst constant traffic: #LMBResearch from Sean Munro (@cellbiol-mrclmb.bsky.social) with John Briggs (@mpibiochem.bsky.social) reveals how GOLPH3 allows COPI vesicles to distinguish between Golgi residents & ER-bound proteins.
Read more: www2.mrc-lmb.cam.ac.uk/protein-sort...
October 6, 2025 at 8:07 AM
Reposted by Juan Ortiz Mateu
Elaborate machinery for inserting proteins into the outer membrane of bacteria www.nature.com/articles/d41...
Elaborate machinery for inserting proteins into the outer membrane of bacteria
Bacteria in the gut use an unusual molecular apparatus to insert complex proteins into their outer membrane.
www.nature.com
October 2, 2025 at 9:29 AM
Reposted by Juan Ortiz Mateu
27 simulations of capturing hundreds of lipid scrambling events reveal mechanisms of lipid translocation.

However, according to reviewers, more evidence is needed on outside-the-groove scramblase activity.
buff.ly/LTxy4yX
September 10, 2025 at 10:02 AM
Reposted by Juan Ortiz Mateu
Exciting to see our protein binder design pipeline BindCraft published in its final form in @Nature ! This has been an amazing collaborative effort with Lennart, Christian, @sokrypton.org, Bruno and many other amazing lab members and collaborators.

www.nature.com/articles/s41...
August 27, 2025 at 4:14 PM
Reposted by Juan Ortiz Mateu
💫NEW: @annaleder.bsky.social et al. show that the chaperones PDIA6, Hsp70 BiP, ERdj3, PDIA1 and Hsp90 form co-condensates within the endoplasmic reticulum, enhancing folding and preventing misfolding of client proteins. @masgu.bsky.social @hillerlab.bsky.social
bit.ly/47b3Mjk
A multichaperone condensate enhances protein folding in the endoplasmic reticulum - Nature Cell Biology
Leder et al. show that the chaperones PDIA6, Hsp70 BiP, ERdj3, PDIA1 and Hsp90 form co-condensates within the endoplasmic reticulum, enhancing folding and preventing misfolding of client proteins.
bit.ly
August 22, 2025 at 5:36 PM
Reposted by Juan Ortiz Mateu
Out today in @nature.com: Together with the Honigmann, Shevchenko, Drobot and Hof labs, we present a general workflow for imaging the localization and transport of individual lipids in cells and mapping their metabolism.
www.nature.com/articles/s41...
August 21, 2025 at 5:19 AM
Reposted by Juan Ortiz Mateu
Check out our new preprint on the discovery of a molecular switch in NAC that mediates nascent chain sorting on the ribosome and prevents mitochondrial protein mistargeting by SRP. A great collaboration with the Shan Lab @Caltech and the Qi Lab @UVA: www.biorxiv.org/content/10.1...
August 1, 2025 at 3:27 PM
Reposted by Juan Ortiz Mateu
Very excited to announce that my first, first author paper, is now on BioRxiv! In this paper we unambiguously show #COPII coated vesicles in unperturbed human cells for the very first time!!

Make my day and check it out!
www.biorxiv.org/content/10.1...

#Cryo-ET #TeamTomo #Cryo-CLEM ❄️🔬❄️🔬❄️🔬❄️🔬
July 30, 2025 at 3:28 PM
Reposted by Juan Ortiz Mateu
ChimeraX daily builds can predict binding affinity of small molecules using Boltz 2 on your Mac, Windows or Linux computer. www.rbvi.ucsf.edu/chimerax/dat...
July 24, 2025 at 2:44 AM
Reposted by Juan Ortiz Mateu
Proud to share our first lab pre-print: “SND3 is the membrane insertase within a fungal multipass translocon” where @tzujingyang.bsky.social solved the structure of a ribosome-associated SND3-translocon complex involved in ER membrane protein insertion ➡️ doi.org/10.1101/2025...
July 12, 2025 at 12:49 AM
Reposted by Juan Ortiz Mateu
Folddisco finds similar (dis)continuous 3D motifs in large protein structure databases. Its efficient index enables fast uncharacterized active site annotation, protein conformational state analysis and PPI interface comparison. 1/9🧶🧬
📄 www.biorxiv.org/content/10.1...
🌐 search.foldseek.com/folddisco
July 7, 2025 at 8:21 AM
Reposted by Juan Ortiz Mateu
Engineered ATP synthase with multiple a-subunits!

Engineering of ATP synthase for enhancement of proton-to-ATP ratio
www.nature.com/articles/s41...
Engineering of ATP synthase for enhancement of proton-to-ATP ratio - Nature Communications
FoF1-ATP synthase converts proton motive force into ATP, with the H+/ATP ratio typically ranging from 2.7 to 5. Here, the authors engineered this enzyme to form multiple peripheral stalks, achieving a...
www.nature.com
July 3, 2025 at 10:09 AM
Happy to share an updated version of our work on the importance of the SARS-CoV-2 spike transmembrane domain in viral entry.

www.biorxiv.org/content/10.1...
www.biorxiv.org
June 20, 2025 at 10:04 AM
Reposted by Juan Ortiz Mateu
🚨 New preprint!
Using U-ExM + in situ cryo-ET, we show how C2CD3 builds an in-to-out radial architecture connecting the distal centriole lumen to its appendages. Great collab with @cellarchlab.com @chgenoud.bsky.social @stearnslab.bsky.social 🙌. #TeamTomo #UExM
www.biorxiv.org/content/10.1...
June 19, 2025 at 8:58 AM
Reposted by Juan Ortiz Mateu
Amazingly, this gave us a high-confidence transmembrane channel for both mouse and human NS3, with oleic acids forming a bilayer-like pattern.

Our group now call this the “fatty acid hack.”

The #alphafold predictions with and without fatty acids shown below 👇
June 18, 2025 at 11:47 AM
Reposted by Juan Ortiz Mateu
#FluorescenceFriday (we are watching vimentin (HaloTag7) in U2OS cells co-stained with Nile Red) #livecell #longterm
December 13, 2024 at 4:23 PM
Reposted by Juan Ortiz Mateu
Excited to unveil Boltz-2, our new model capable not only of predicting structures but also binding affinities! Boltz-2 is the first AI model to approach the performance of FEP simulations while being more than 1000x faster! All open-sourced under MIT license! A thread… 🤗🚀
June 6, 2025 at 1:46 PM
Reposted by Juan Ortiz Mateu
This is just an excellent preprint by Rasmus Jensen and colleagues from Julia Mahamid's lab @embl.org - a tour de force of Cryogenic electron tomography to do in cell structural biology in which they discover a new complex and solve its structure and function! www.biorxiv.org/content/10.1...
In-cell discovery and characterization of a non-canonical bacterial protein translocation-folding complex
Cryo-electron tomography has emerged as powerful technology for in-cell structural biology, and in combination with breakthroughs in protein structure prediction, offers a unique opportunity for illum...
www.biorxiv.org
May 22, 2025 at 7:01 PM
Reposted by Juan Ortiz Mateu
Very special feelings to announce this one... A project that started like 10 years ago is reaching the finish line, ready to shine. In a dream-team with @beckmannlab.bsky.social we solved the long-chased structure of the active membrane protein insertase SecYEG-YidC
www.biorxiv.org/content/10.1...
Substrate-induced assembly and functional mechanism of the bacterial membrane protein insertase SecYEG-YidC
The universally conserved Sec translocon and the YidC/Oxa1-type insertases mediate biogenesis of alpha-helical membrane proteins, but the molecular basis of their cooperation has remained disputed over decades. A recent discovery of a multi-subunit insertase in eukaryotes has raised the question about the architecture of the putative bacterial ortholog SecYEG-YidC and its functional mechanism. Here, we combine cryogenic electron microscopy with cell-free protein synthesis in nanodiscs to visualize biogenesis of the polytopic membrane protein NuoK, the subunit K of NADH-quinone oxidoreductase, that requires both SecYEG and YidC for insertion. We demonstrate that YidC is recruited to the back of the translocon at the late stage of the substrate insertion, in resemblance to the eukaryotic system, and in vivo experiments indicate that the complex assembly is vital for the cells. The nascent chain does not utilize the lateral gate of SecYEG, but enters the lipid membrane at the SecYE-YidC interface, with YidC being the primary insertase. SecYEG-YidC complex promotes folding of the nascent helices at the interface prior their insertion, so the examined cellular pathway follows the fundamental thermodynamic principles of membrane protein folding. Our data provide the first detailed insight on the elusive insertase machinery in the physiologically relevant environment, highlight the importance of the nascent chain for its assembly, and prove the evolutionary conservation of the gate-independent insertion route. ### Competing Interest Statement The authors have declared no competing interest. Deutsche Forschungsgemeinschaft, https://ror.org/018mejw64, Ke1879/3, 267205415 (CRC 1208) European Research Council, https://ror.org/0472cxd90, CRYOTRANSLATION
www.biorxiv.org
May 27, 2025 at 9:21 AM
Reposted by Juan Ortiz Mateu
KIF2A stabilizes intercellular bridge #microtubules to maintain mouse embryonic stem cell #cytokinesis, say Lieke Stockmann, Sreya Basu, Niels Galjart and colleagues @erasmusmc.bsky.social: rupress.org/jcb/article/...

#CellCycle #CellDivision #Cytoskeleton #StemCells #Kinesins
May 19, 2025 at 2:47 PM