Arne Elofsson
@bioinfo.se
Professor in bioinformatics, Stockholm University. Protein structure lover ( interactions predictions, evolution ..). Using machine learning as a part of AI for Sciences for halv my life. In addition to succén, I sometimes rants about sailing or skiing.
Reposted by Arne Elofsson
Excellent #postdoc opportunity available in @sjorsscheres.bsky.social’ group, working on new image processing algorithms for #cryoEM structure determination in their #RELION open-source software.
www.nature.com/naturecareer...
Apply by 25 NOV
#PostdocJobs #ScienceJobs
www.nature.com/naturecareer...
Apply by 25 NOV
#PostdocJobs #ScienceJobs
November 6, 2025 at 3:46 PM
Excellent #postdoc opportunity available in @sjorsscheres.bsky.social’ group, working on new image processing algorithms for #cryoEM structure determination in their #RELION open-source software.
www.nature.com/naturecareer...
Apply by 25 NOV
#PostdocJobs #ScienceJobs
www.nature.com/naturecareer...
Apply by 25 NOV
#PostdocJobs #ScienceJobs
Reposted by Arne Elofsson
Looks like OpenFold3 has been formally released in a public "preview". Not quite on parity with AlphaFold3 on a few benchmarks shown, in particular for antibody interactions. All info on the github link. I am sure we will hear more about this from the developers github.com/aqlaboratory...
GitHub - aqlaboratory/openfold-3: OpenFold3: A fully open source biomolecular structure prediction model based on AlphaFold3
OpenFold3: A fully open source biomolecular structure prediction model based on AlphaFold3 - aqlaboratory/openfold-3
github.com
October 28, 2025 at 9:30 AM
Looks like OpenFold3 has been formally released in a public "preview". Not quite on parity with AlphaFold3 on a few benchmarks shown, in particular for antibody interactions. All info on the github link. I am sure we will hear more about this from the developers github.com/aqlaboratory...
Reposted by Arne Elofsson
Maybe they forgot that they actually themselves published a commentary on how one can quantify the self-consistency of publication metrics (which would at least be one aspect of potential utility)
Measures for measures
doi.org/10.1038/4441...
Measures for measures
doi.org/10.1038/4441...
Measures for measures - Nature
Citation analysis can loom large in a scientist's career. In this issue Sune Lehmann, Andrew Jackson and Benny Lautrup compare commonly used measures of author quality. The mean number of citations pe...
doi.org
October 26, 2025 at 8:55 AM
Maybe they forgot that they actually themselves published a commentary on how one can quantify the self-consistency of publication metrics (which would at least be one aspect of potential utility)
Measures for measures
doi.org/10.1038/4441...
Measures for measures
doi.org/10.1038/4441...
Reposted by Arne Elofsson
October 24, 2025 at 4:06 AM
October 24, 2025 at 4:06 AM
October 24, 2025 at 3:36 AM
Reposted by Arne Elofsson
Lots of US companies have done lots of dreadful things to Americans. But the symbolism of paying to destroy the White House is hard to top.
This is who is paying for the destruction of the White House East Wing, per @wsj.com
Altria Group Inc.
Amazon
Apple Inc.
Booz Allen Hamilton Holding Corp.
Caterpillar Inc.
Coinbase Global
Comcast Corp.
Hard Rock International
Google
HP Inc.
Lockheed Martin Corp.
Meta Platforms Inc.
1/3
Altria Group Inc.
Amazon
Apple Inc.
Booz Allen Hamilton Holding Corp.
Caterpillar Inc.
Coinbase Global
Comcast Corp.
Hard Rock International
HP Inc.
Lockheed Martin Corp.
Meta Platforms Inc.
1/3
October 22, 2025 at 11:02 PM
Lots of US companies have done lots of dreadful things to Americans. But the symbolism of paying to destroy the White House is hard to top.
October 23, 2025 at 12:49 AM
We are all going to die (not just as individuals). www.theguardian.com/environment/...
Global use of coal hit record high in 2024
Bleak report finds greenhouse gas emissions are still rising despite ‘exponential’ growth of renewables
www.theguardian.com
October 22, 2025 at 8:51 AM
We are all going to die (not just as individuals). www.theguardian.com/environment/...
Reposted by Arne Elofsson
I lost any faith in Trump’s peace negotiations.
At this point, it’s clear that NO people on his team actually have any understanding of Ukraine-Russia relations, the situation on the battlefield, and the leverage.
They just don’t know how to make a deal so they brute force.
At this point, it’s clear that NO people on his team actually have any understanding of Ukraine-Russia relations, the situation on the battlefield, and the leverage.
They just don’t know how to make a deal so they brute force.
October 20, 2025 at 6:07 AM
I lost any faith in Trump’s peace negotiations.
At this point, it’s clear that NO people on his team actually have any understanding of Ukraine-Russia relations, the situation on the battlefield, and the leverage.
They just don’t know how to make a deal so they brute force.
At this point, it’s clear that NO people on his team actually have any understanding of Ukraine-Russia relations, the situation on the battlefield, and the leverage.
They just don’t know how to make a deal so they brute force.
Reposted by Arne Elofsson
Dunno if youse are across this... but it's forecast that in Sydney on Wednesday the temp will be 38C. (100 F)
It's OCTOBER! That's FIFTEEN DEGREES ABOVE AVERAGE!
Our Government and fossil fuel companies are determined to cook us alive! Boil the oceans. Kill our forests. Turn habitat to ash.🥺😩
It's OCTOBER! That's FIFTEEN DEGREES ABOVE AVERAGE!
Our Government and fossil fuel companies are determined to cook us alive! Boil the oceans. Kill our forests. Turn habitat to ash.🥺😩
October 18, 2025 at 4:57 AM
Dunno if youse are across this... but it's forecast that in Sydney on Wednesday the temp will be 38C. (100 F)
It's OCTOBER! That's FIFTEEN DEGREES ABOVE AVERAGE!
Our Government and fossil fuel companies are determined to cook us alive! Boil the oceans. Kill our forests. Turn habitat to ash.🥺😩
It's OCTOBER! That's FIFTEEN DEGREES ABOVE AVERAGE!
Our Government and fossil fuel companies are determined to cook us alive! Boil the oceans. Kill our forests. Turn habitat to ash.🥺😩
Reposted by Arne Elofsson
We were actually getting somewhere, too. 😞
@sbmitche.bsky.social
www.library.hbs.edu/working-know...
@sbmitche.bsky.social
www.library.hbs.edu/working-know...
October 15, 2025 at 11:47 AM
We were actually getting somewhere, too. 😞
@sbmitche.bsky.social
www.library.hbs.edu/working-know...
@sbmitche.bsky.social
www.library.hbs.edu/working-know...
Planetary Rings
xkcd.com
October 17, 2025 at 4:57 PM
Reposted by Arne Elofsson
To benchmark this Ricardo and @julianvangerwen.bsky.social have tested this on predicted structures if ubiquitinated proteins showing we get better accuracy when modelling with the covalently bound ubiquitin. We will continue to test this further.
October 16, 2025 at 10:56 AM
To benchmark this Ricardo and @julianvangerwen.bsky.social have tested this on predicted structures if ubiquitinated proteins showing we get better accuracy when modelling with the covalently bound ubiquitin. We will continue to test this further.
Economics Nobel prize won by researchers who showed how science boosts growth www.nature.com/articles/d41...
Client Challenge
www.nature.com
October 13, 2025 at 8:02 PM
Economics Nobel prize won by researchers who showed how science boosts growth www.nature.com/articles/d41...
‘Am I redundant?’: how AI changed my career in bioinformatics www.nature.com/articles/d41...
Client Challenge
www.nature.com
October 13, 2025 at 8:02 PM
‘Am I redundant?’: how AI changed my career in bioinformatics www.nature.com/articles/d41...
Reposted by Arne Elofsson
Photo of Philippe Aghion: Harvard University
October 13, 2025 at 10:39 AM
Photo of Philippe Aghion: Harvard University
Reposted by Arne Elofsson
Something that scares me is how people are starting to use SSD disks for large scale storage.
Look, we've spent decades figuring out how build somewhat reliable storage from spinning disks. We're beginning to understand how to deal with them.
Look, we've spent decades figuring out how build somewhat reliable storage from spinning disks. We're beginning to understand how to deal with them.
October 13, 2025 at 5:04 AM
Something that scares me is how people are starting to use SSD disks for large scale storage.
Look, we've spent decades figuring out how build somewhat reliable storage from spinning disks. We're beginning to understand how to deal with them.
Look, we've spent decades figuring out how build somewhat reliable storage from spinning disks. We're beginning to understand how to deal with them.
Reposted by Arne Elofsson
'All three awards (...) honored achievements rooted in fundamental research from decades ago. Some experts interpret the selections by the Royal Swedish Academy of Sciences as representing the importance of slow, basic science, work pursued out of a desire to better understand the world.'
Nobel Prizes This Year Offer Three Cheers for Slow Science
www.nytimes.com
October 10, 2025 at 6:49 AM
'All three awards (...) honored achievements rooted in fundamental research from decades ago. Some experts interpret the selections by the Royal Swedish Academy of Sciences as representing the importance of slow, basic science, work pursued out of a desire to better understand the world.'
Happy days (although we do not know how the future will be no bombings is better than bombings) www.theguardian.com/world/live/2...
Gaza ceasefire has now come into effect, Israel’s military says – live
Ceasefire came into effect at midday local time
www.theguardian.com
October 10, 2025 at 10:01 AM
Happy days (although we do not know how the future will be no bombings is better than bombings) www.theguardian.com/world/live/2...