Paul Röppenack
@retinaut.bsky.social
Phd student | retina®eneration | aesthetica in-vivo
Reposted by Paul Röppenack
🙏 Thanks to
@naturemethods.bsky.social, @ritastrack.bsky.social, the reviewers, and the awesome bioimage analysis community.
We can't wait to see what you build with BiaPy! 🚀🧠
🔗 www.nature.com/articles/s41...
#BiaPy #BioimageAnalysis #DeepLearning
@naturemethods.bsky.social, @ritastrack.bsky.social, the reviewers, and the awesome bioimage analysis community.
We can't wait to see what you build with BiaPy! 🚀🧠
🔗 www.nature.com/articles/s41...
#BiaPy #BioimageAnalysis #DeepLearning
BiaPy: accessible deep learning on bioimages - Nature Methods
Nature Methods - BiaPy: accessible deep learning on bioimages
www.nature.com
April 29, 2025 at 9:33 AM
🙏 Thanks to
@naturemethods.bsky.social, @ritastrack.bsky.social, the reviewers, and the awesome bioimage analysis community.
We can't wait to see what you build with BiaPy! 🚀🧠
🔗 www.nature.com/articles/s41...
#BiaPy #BioimageAnalysis #DeepLearning
@naturemethods.bsky.social, @ritastrack.bsky.social, the reviewers, and the awesome bioimage analysis community.
We can't wait to see what you build with BiaPy! 🚀🧠
🔗 www.nature.com/articles/s41...
#BiaPy #BioimageAnalysis #DeepLearning
Reposted by Paul Röppenack
Looking forward to it! 💪
Zebrafish Community Cre/lox Resource website (ZebrafishCCR) will be online soon!
March 30, 2025 at 5:50 AM
Looking forward to it! 💪
Reposted by Paul Röppenack
#Cellpose 3 paper now out. Not all images are perfect. Restore your images with Cellpose3 to get better segmentations, w/ @marius10p.bsky.social www.nature.com/articles/s41...
February 12, 2025 at 11:10 AM
#Cellpose 3 paper now out. Not all images are perfect. Restore your images with Cellpose3 to get better segmentations, w/ @marius10p.bsky.social www.nature.com/articles/s41...
Reposted by Paul Röppenack
What if… spontaneous neural activity 🧠 reflects the baseline rumblings of a brainwide dynamical system initialized for learning? We find that the rumblings have macroscopic properties like those emerging from linear symmetric, critical systems 🧵 #neuroscience #neuroAI www.biorxiv.org/content/10.1...
January 12, 2025 at 7:55 PM
What if… spontaneous neural activity 🧠 reflects the baseline rumblings of a brainwide dynamical system initialized for learning? We find that the rumblings have macroscopic properties like those emerging from linear symmetric, critical systems 🧵 #neuroscience #neuroAI www.biorxiv.org/content/10.1...
Reposted by Paul Röppenack
Our paper on how the neuromodulator nitric oxide modulates a subset of mouse retinal ganglion cells is finally published in @elife.bsky.social doi.org/10.7554/eLif... Great work by @dgonschorek.bsky.social together with the lab of @oliviermarre.bsky.social and @matigoldin.bsky.social, ...
January 10, 2025 at 3:16 PM
Our paper on how the neuromodulator nitric oxide modulates a subset of mouse retinal ganglion cells is finally published in @elife.bsky.social doi.org/10.7554/eLif... Great work by @dgonschorek.bsky.social together with the lab of @oliviermarre.bsky.social and @matigoldin.bsky.social, ...
Reposted by Paul Röppenack
🤩
Towing of lateral line axons in vivo in a transgenic zebrafish embryo. Great imaging at the EMBO #DevBiol course in Quintay, Chile, using a Zeiss Light Sheet microscope. Huge thanks to Universidad Mayor, Microxchile, Leo Valdivia, & LiSIUM_Chile for allowing the use of the microscope at the course
January 10, 2025 at 5:49 PM
🤩
Reposted by Paul Röppenack
#RStats
I'm so, so thrilled to finally share the release of Rlinguo, a mobile app that runs R 📱
This is a fully, native mobile app that uses #webR in the backend to run R functions.
Available on the App Store (iPhone) & Play Store (Android)
rtask.thinkr.fr/introducing-...
I'm so, so thrilled to finally share the release of Rlinguo, a mobile app that runs R 📱
This is a fully, native mobile app that uses #webR in the backend to run R functions.
Available on the App Store (iPhone) & Play Store (Android)
rtask.thinkr.fr/introducing-...
Introducing Rlinguo, a native mobile app that runs R - Rtask
The R task Force - R experts for all your needs
rtask.thinkr.fr
December 18, 2024 at 2:45 PM
#RStats
I'm so, so thrilled to finally share the release of Rlinguo, a mobile app that runs R 📱
This is a fully, native mobile app that uses #webR in the backend to run R functions.
Available on the App Store (iPhone) & Play Store (Android)
rtask.thinkr.fr/introducing-...
I'm so, so thrilled to finally share the release of Rlinguo, a mobile app that runs R 📱
This is a fully, native mobile app that uses #webR in the backend to run R functions.
Available on the App Store (iPhone) & Play Store (Android)
rtask.thinkr.fr/introducing-...
Reposted by Paul Röppenack
Aanandita Kothurkar, @colinchulab.bsky.social, Ryan MacDonald and colleagues @ucleye.bsky.social apply IBEX to simultaneously identify all the major retinal cell types.
Highlight: journals.biologists.com/jcs/article/...
Article: journals.biologists.com/jcs/article/...
Highlight: journals.biologists.com/jcs/article/...
Article: journals.biologists.com/jcs/article/...
December 16, 2024 at 10:51 AM
Aanandita Kothurkar, @colinchulab.bsky.social, Ryan MacDonald and colleagues @ucleye.bsky.social apply IBEX to simultaneously identify all the major retinal cell types.
Highlight: journals.biologists.com/jcs/article/...
Article: journals.biologists.com/jcs/article/...
Highlight: journals.biologists.com/jcs/article/...
Article: journals.biologists.com/jcs/article/...
Reposted by Paul Röppenack
High-speed 3D random access two-photon imaging at ≥ 300 kHz – with SPARCLS: opg.optica.org/optica/fullt...
By the outstanding @carolineberlage.bsky.social and team, including @urslucasboehm.bsky.social, @andrewplested.bsky.social et al.
By the outstanding @carolineberlage.bsky.social and team, including @urslucasboehm.bsky.social, @andrewplested.bsky.social et al.
December 10, 2024 at 8:23 PM
Reposted by Paul Röppenack
Out today in IOVS @arvoinfo.bsky.social
Neuroscience student Fei Shang's first publication
density and distribution of vessels in the healthy retinal circulation
doi.org/10.1167/iovs.65.14.3
@cvsuor.bsky.social
@urneuroscience.bsky.social @flaumeye.bsky.social
Neuroscience student Fei Shang's first publication
density and distribution of vessels in the healthy retinal circulation
doi.org/10.1167/iovs.65.14.3
@cvsuor.bsky.social
@urneuroscience.bsky.social @flaumeye.bsky.social
December 2, 2024 at 4:17 PM
Out today in IOVS @arvoinfo.bsky.social
Neuroscience student Fei Shang's first publication
density and distribution of vessels in the healthy retinal circulation
doi.org/10.1167/iovs.65.14.3
@cvsuor.bsky.social
@urneuroscience.bsky.social @flaumeye.bsky.social
Neuroscience student Fei Shang's first publication
density and distribution of vessels in the healthy retinal circulation
doi.org/10.1167/iovs.65.14.3
@cvsuor.bsky.social
@urneuroscience.bsky.social @flaumeye.bsky.social
Reposted by Paul Röppenack
Wonderful resource for #zebrafish fans! Check it out if you haven’t yet: www.facebase.org
December 3, 2024 at 12:55 PM
Wonderful resource for #zebrafish fans! Check it out if you haven’t yet: www.facebase.org
Reposted by Paul Röppenack
Our preprint list is now up on FocalPlane. This week we focus on research in #bioimageanalysis. Drop us a message if we’re missing any preprints that you’ve been reading or writing!
focalplane.biologists.com/2024/11/29/m...
focalplane.biologists.com/2024/11/29/m...
Microscopy preprints - bioimage analysis - FocalPlane
Microscopy preprints - bioimage analysis - Discussions
focalplane.biologists.com
November 29, 2024 at 3:26 PM
Our preprint list is now up on FocalPlane. This week we focus on research in #bioimageanalysis. Drop us a message if we’re missing any preprints that you’ve been reading or writing!
focalplane.biologists.com/2024/11/29/m...
focalplane.biologists.com/2024/11/29/m...
Reposted by Paul Röppenack
The global per capita food production of 49 different fruits, vegetables, and nuts from 1961 to 2022
A very pretty and interesting chart by @maxroser.bsky.social
A very pretty and interesting chart by @maxroser.bsky.social
November 27, 2024 at 2:14 AM
The global per capita food production of 49 different fruits, vegetables, and nuts from 1961 to 2022
A very pretty and interesting chart by @maxroser.bsky.social
A very pretty and interesting chart by @maxroser.bsky.social
Reposted by Paul Röppenack
Uncovering the electrical synapse proteome in retinal neurons via in vivo proximity labeling https://www.biorxiv.org/content/10.1101/2024.11.26.625481v1
Uncovering the electrical synapse proteome in retinal neurons via in vivo proximity labeling https://www.biorxiv.org/content/10.1101/2024.11.26.625481v1
Through decades of research, we have gained a comprehensive understanding of the protein complexes u
www.biorxiv.org
November 27, 2024 at 2:16 AM
Uncovering the electrical synapse proteome in retinal neurons via in vivo proximity labeling https://www.biorxiv.org/content/10.1101/2024.11.26.625481v1
Reposted by Paul Röppenack
My #I2K2024 lecture about "BioImage Analysis Code Generation" (using #LLMs) is now on #YouTube. 🔬💻🤖
Big thanks again to @bioimagingna.bsky.social for having me! Also check out the other session recordings! Lots of useful BIA tools demostrated and explained! ⤵️
youtu.be/sBcV8rasOWo?...
Big thanks again to @bioimagingna.bsky.social for having me! Also check out the other session recordings! Lots of useful BIA tools demostrated and explained! ⤵️
youtu.be/sBcV8rasOWo?...
November 26, 2024 at 5:42 AM
My #I2K2024 lecture about "BioImage Analysis Code Generation" (using #LLMs) is now on #YouTube. 🔬💻🤖
Big thanks again to @bioimagingna.bsky.social for having me! Also check out the other session recordings! Lots of useful BIA tools demostrated and explained! ⤵️
youtu.be/sBcV8rasOWo?...
Big thanks again to @bioimagingna.bsky.social for having me! Also check out the other session recordings! Lots of useful BIA tools demostrated and explained! ⤵️
youtu.be/sBcV8rasOWo?...
Reposted by Paul Röppenack
I recently went to a talk by Tom Baden (@neurofishh.bsky.social). One of the best I've ever seen. It's a radical reinterpretation of what color vision was initially for. And during questions it covered the roles of the green cone and the UV cones (yep, plural) in mouse vision.
youtu.be/gzfiUZ2_5pc
youtu.be/gzfiUZ2_5pc
Ancestral photoreceptor diversity as the basis of visual behaviour
YouTube video by BadenLab
youtu.be
November 24, 2024 at 5:27 PM
I recently went to a talk by Tom Baden (@neurofishh.bsky.social). One of the best I've ever seen. It's a radical reinterpretation of what color vision was initially for. And during questions it covered the roles of the green cone and the UV cones (yep, plural) in mouse vision.
youtu.be/gzfiUZ2_5pc
youtu.be/gzfiUZ2_5pc
Reposted by Paul Röppenack
#TodayinHistory #dataviz #OTD 📊
💀Nov 23, 1916 Charles Booth died in Thringstone, Leicestershire, England 🏴
1889: Social mapping. Street maps of London, showing poverty and wealth by color coding, transforming existing methods of social survey and poverty mapping towards the end of the 19th C
💀Nov 23, 1916 Charles Booth died in Thringstone, Leicestershire, England 🏴
1889: Social mapping. Street maps of London, showing poverty and wealth by color coding, transforming existing methods of social survey and poverty mapping towards the end of the 19th C
November 24, 2024 at 3:20 AM
#TodayinHistory #dataviz #OTD 📊
💀Nov 23, 1916 Charles Booth died in Thringstone, Leicestershire, England 🏴
1889: Social mapping. Street maps of London, showing poverty and wealth by color coding, transforming existing methods of social survey and poverty mapping towards the end of the 19th C
💀Nov 23, 1916 Charles Booth died in Thringstone, Leicestershire, England 🏴
1889: Social mapping. Street maps of London, showing poverty and wealth by color coding, transforming existing methods of social survey and poverty mapping towards the end of the 19th C
Reposted by Paul Röppenack
Another go-to graph for "AHA!" moments: phylogenetic trees. This @embl.org hosted interactive tree viz tool is intuitive and so so so customizable.
November 24, 2024 at 10:55 AM
Another go-to graph for "AHA!" moments: phylogenetic trees. This @embl.org hosted interactive tree viz tool is intuitive and so so so customizable.
Reposted by Paul Röppenack
The brand new `legendry` package by @teunbrand.bsky.social takes ggplots2 guides to the next level 🤩
teunbrand.github.io/teunbrand_bl...
teunbrand.github.io/teunbrand_bl...
November 22, 2024 at 3:44 AM
The brand new `legendry` package by @teunbrand.bsky.social takes ggplots2 guides to the next level 🤩
teunbrand.github.io/teunbrand_bl...
teunbrand.github.io/teunbrand_bl...
Reposted by Paul Röppenack
My #BioimageTooloftheDay is DRMIME
github.com/abnan/DRMIME
It is a very useful tool for aligning images.
I had a lot of fun using it to align zebrafish embryos.
Also available on #ZeroCostDL4Mic
github.com/HenriquesLab...
github.com/abnan/DRMIME
It is a very useful tool for aligning images.
I had a lot of fun using it to align zebrafish embryos.
Also available on #ZeroCostDL4Mic
github.com/HenriquesLab...
November 21, 2024 at 2:42 PM
My #BioimageTooloftheDay is DRMIME
github.com/abnan/DRMIME
It is a very useful tool for aligning images.
I had a lot of fun using it to align zebrafish embryos.
Also available on #ZeroCostDL4Mic
github.com/HenriquesLab...
github.com/abnan/DRMIME
It is a very useful tool for aligning images.
I had a lot of fun using it to align zebrafish embryos.
Also available on #ZeroCostDL4Mic
github.com/HenriquesLab...