Carsen Stringer
@computingnature.bsky.social
group leader @ HHMIJanelia, #neuroscience + AI 🔬 #cellpose | diversity and open-science for better science | Ⓥ | she/her | https://mouseland.github.io
Pinned
What if… spontaneous neural activity 🧠 reflects the baseline rumblings of a brainwide dynamical system initialized for learning? We find that the rumblings have macroscopic properties like those emerging from linear symmetric, critical systems 🧵 #neuroscience #neuroAI www.biorxiv.org/content/10.1...
Reposted by Carsen Stringer
For #FluorescenceFriday - experiment was apparently a stereotaxic injection "miss", but resulted in a lovely image nevertheless. Credit to @rphillips3.bsky.social and JHU undergrad Natalia Gonzalez-Perez 🧠🔬🧪
December 12, 2025 at 1:17 PM
For #FluorescenceFriday - experiment was apparently a stereotaxic injection "miss", but resulted in a lovely image nevertheless. Credit to @rphillips3.bsky.social and JHU undergrad Natalia Gonzalez-Perez 🧠🔬🧪
Reposted by Carsen Stringer
Some #FluorescenceFriday content for you - check out these anterior cingulate cortex neurons that project to the superior colliculus. Image by @izzabellagreen.bsky.social 🧠
December 12, 2025 at 5:20 PM
Some #FluorescenceFriday content for you - check out these anterior cingulate cortex neurons that project to the superior colliculus. Image by @izzabellagreen.bsky.social 🧠
Reposted by Carsen Stringer
A favorite recent image of some busy microglia, lovingly named the Rat King (yellow CD68, pink Iba1, blue DAPI) for my first #FluorescenceFriday
December 12, 2025 at 2:38 PM
A favorite recent image of some busy microglia, lovingly named the Rat King (yellow CD68, pink Iba1, blue DAPI) for my first #FluorescenceFriday
Reposted by Carsen Stringer
A glittery, festive #FluorescenceFriday today, spent playing with some fun samples 🪩🕺
December 12, 2025 at 3:32 PM
A glittery, festive #FluorescenceFriday today, spent playing with some fun samples 🪩🕺
Reposted by Carsen Stringer
Dimensionality reduction may be the wrong approach to understanding neural representations. Our new paper shows that across human visual cortex, dimensionality is unbounded and scales with dataset size—we show this across nearly four orders of magnitude. journals.plos.org/ploscompbiol...
December 11, 2025 at 3:32 PM
Dimensionality reduction may be the wrong approach to understanding neural representations. Our new paper shows that across human visual cortex, dimensionality is unbounded and scales with dataset size—we show this across nearly four orders of magnitude. journals.plos.org/ploscompbiol...
Reposted by Carsen Stringer
Amazing talk by my dear colleague and friend @albertdm.bsky.social and his supervisor @maweigert.bsky.social showing the cool things you can do with Spotiflow at #CBIAS2025. Look at this beautiful learned spot detection in 3D! 👩🏻💻👩🏻💻🔬 #bioimageanalysis #spotdetection
November 24, 2025 at 11:31 AM
Amazing talk by my dear colleague and friend @albertdm.bsky.social and his supervisor @maweigert.bsky.social showing the cool things you can do with Spotiflow at #CBIAS2025. Look at this beautiful learned spot detection in 3D! 👩🏻💻👩🏻💻🔬 #bioimageanalysis #spotdetection
#SfN2025 Qingqing is presenting this work on spatial predictive coding NOW at poster Q9!
Does predictive coding work in SPACE or in TIME? Most neuroscientists assume TIME, i.e. neurons predict their future sensory inputs. We show that in visual cortex predictive coding actually works across SPACE, just like the original Rao+Ballard theory #neuroscience
www.biorxiv.org/cgi/content/...
www.biorxiv.org/cgi/content/...
November 19, 2025 at 10:53 PM
#SfN2025 Qingqing is presenting this work on spatial predictive coding NOW at poster Q9!
#sfn2025 interested in how eye movements 👀 versus orofacial movements influence 🐭 visual cortex activity 🧠? Check out poster R8 by @atika-syeda.bsky.social NOW!
November 19, 2025 at 7:16 PM
#sfn2025 interested in how eye movements 👀 versus orofacial movements influence 🐭 visual cortex activity 🧠? Check out poster R8 by @atika-syeda.bsky.social NOW!
Reposted by Carsen Stringer
Still at SfN on the last day? During the morning session on the 19th, 8:00AM - 12:00PM, come check out our posters from the Moser, Zong, and Gonzalo Cogno groups in row QQ ('Grid cells and spatially modulated cells'). Ephys, imaging, remapping, development, sweeps and more! 🧠
Detailed thread below 👇
Detailed thread below 👇
November 18, 2025 at 10:32 PM
Still at SfN on the last day? During the morning session on the 19th, 8:00AM - 12:00PM, come check out our posters from the Moser, Zong, and Gonzalo Cogno groups in row QQ ('Grid cells and spatially modulated cells'). Ephys, imaging, remapping, development, sweeps and more! 🧠
Detailed thread below 👇
Detailed thread below 👇
Reposted by Carsen Stringer
Happening now! Come see Jorge Ramirez present our recent work showing that Purkinje cell nonlinear mixed selectivity facilitates flexible readouts of locomotor coordination 🐭 🧠🚶♂️ #SfN25 Board W6
November 18, 2025 at 9:23 PM
Happening now! Come see Jorge Ramirez present our recent work showing that Purkinje cell nonlinear mixed selectivity facilitates flexible readouts of locomotor coordination 🐭 🧠🚶♂️ #SfN25 Board W6
Reposted by Carsen Stringer
Watching this literal magic tech take shape has been one of my favorite parts of being in this group - a plausible path to real actual naturalistic life-scale experiments.
#SfN2025
#SfN2025
We're presenting Miniscope Zero, the first fully-wireless Miniscope, at #SfN25! Wireless power + data enable long-term neural recordings from multiple freely behaving animals. @MiniscopeTeam
Poster: Nov. 17, 1–5 pm, ZZ7
Info: tinyurl.com/mhdfb67u
Full video: youtu.be/mIt15LA-rZI?...
Poster: Nov. 17, 1–5 pm, ZZ7
Info: tinyurl.com/mhdfb67u
Full video: youtu.be/mIt15LA-rZI?...
November 16, 2025 at 6:04 PM
Watching this literal magic tech take shape has been one of my favorite parts of being in this group - a plausible path to real actual naturalistic life-scale experiments.
#SfN2025
#SfN2025
Reposted by Carsen Stringer
Good morning #SfN. Want to chat about chronic Neuropixels or tracking? Find me today at the #Neuropixels booth (3731) from 11 to 12! And if you're still around tomorrow afternoon, come talk about distributed coding in navigation at my poster tomorrow afternoon (RR16).
November 18, 2025 at 3:18 PM
Good morning #SfN. Want to chat about chronic Neuropixels or tracking? Find me today at the #Neuropixels booth (3731) from 11 to 12! And if you're still around tomorrow afternoon, come talk about distributed coding in navigation at my poster tomorrow afternoon (RR16).
Reposted by Carsen Stringer
Reposted by Carsen Stringer
#SfN #SocietyForGlia
STARTING NOW!
Ending strong with the last www.liddelowlab.com presentations of the week.
@pryprk.bsky.social
talking about a world first mouse model for XDP... and OLIGODENDROCYTES!
@melcooperphd.bsky.social
presenting on astrocyte networks in the mouse forebrain.
STARTING NOW!
Ending strong with the last www.liddelowlab.com presentations of the week.
@pryprk.bsky.social
talking about a world first mouse model for XDP... and OLIGODENDROCYTES!
@melcooperphd.bsky.social
presenting on astrocyte networks in the mouse forebrain.
November 18, 2025 at 8:58 PM
#SfN #SocietyForGlia
STARTING NOW!
Ending strong with the last www.liddelowlab.com presentations of the week.
@pryprk.bsky.social
talking about a world first mouse model for XDP... and OLIGODENDROCYTES!
@melcooperphd.bsky.social
presenting on astrocyte networks in the mouse forebrain.
STARTING NOW!
Ending strong with the last www.liddelowlab.com presentations of the week.
@pryprk.bsky.social
talking about a world first mouse model for XDP... and OLIGODENDROCYTES!
@melcooperphd.bsky.social
presenting on astrocyte networks in the mouse forebrain.
Reposted by Carsen Stringer
#sfn2025 posters 4 and 5 today: our collaborator Nitsan Goldstein shares some of our work on suppression of pain in PBN with Nick Betley, and grad student Ryan Lu shares his work modeling swim dynamics in the jellyfish nervous system with Brady Weissbourd
November 18, 2025 at 2:32 PM
#sfn2025 posters 4 and 5 today: our collaborator Nitsan Goldstein shares some of our work on suppression of pain in PBN with Nick Betley, and grad student Ryan Lu shares his work modeling swim dynamics in the jellyfish nervous system with Brady Weissbourd
Reposted by Carsen Stringer
Looking forward to SfN in San Diego ☀️ Come visit our posters and Nano talk!
November 18, 2025 at 2:28 PM
Reposted by Carsen Stringer
presenting TODAY at #SfN2025 🧠
if you're curious about distinct structure learning & metacognitive dynamics across multiple statistical patterns & stimuli types, come check out my poster w/
@meganakpeters.bsky.social 📈
📍PSTR363.17 / UU13
🕐 Tues Nov 18 1-5 PM
www.abstractsonline.com/pp8/#!/21171...
if you're curious about distinct structure learning & metacognitive dynamics across multiple statistical patterns & stimuli types, come check out my poster w/
@meganakpeters.bsky.social 📈
📍PSTR363.17 / UU13
🕐 Tues Nov 18 1-5 PM
www.abstractsonline.com/pp8/#!/21171...
November 18, 2025 at 5:41 PM
presenting TODAY at #SfN2025 🧠
if you're curious about distinct structure learning & metacognitive dynamics across multiple statistical patterns & stimuli types, come check out my poster w/
@meganakpeters.bsky.social 📈
📍PSTR363.17 / UU13
🕐 Tues Nov 18 1-5 PM
www.abstractsonline.com/pp8/#!/21171...
if you're curious about distinct structure learning & metacognitive dynamics across multiple statistical patterns & stimuli types, come check out my poster w/
@meganakpeters.bsky.social 📈
📍PSTR363.17 / UU13
🕐 Tues Nov 18 1-5 PM
www.abstractsonline.com/pp8/#!/21171...
Reposted by Carsen Stringer
At #sfn2025? Check out 2 posters this afternoon from our lab: David Jin at D9 and Elam Cutts at LBP100.
Who's coming to #SfN25? Come see us at my lab's posters! 2 Saturday 1-5, and another two on Tuesday 1-5.
November 18, 2025 at 7:04 PM
At #sfn2025? Check out 2 posters this afternoon from our lab: David Jin at D9 and Elam Cutts at LBP100.
Reposted by Carsen Stringer
#SfN2025 Poster 4 of 6
TODAY! Tuesday 11/18 1-5p
@hazimi.bsky.social
PSTR363.09 / UU5 Modeling Prior-like Higher-Order Representations in DecNef with a Generative NERD Model
www.abstractsonline....
TODAY! Tuesday 11/18 1-5p
@hazimi.bsky.social
PSTR363.09 / UU5 Modeling Prior-like Higher-Order Representations in DecNef with a Generative NERD Model
www.abstractsonline....
November 18, 2025 at 7:08 PM
#SfN2025 Poster 4 of 6
TODAY! Tuesday 11/18 1-5p
@hazimi.bsky.social
PSTR363.09 / UU5 Modeling Prior-like Higher-Order Representations in DecNef with a Generative NERD Model
www.abstractsonline....
TODAY! Tuesday 11/18 1-5p
@hazimi.bsky.social
PSTR363.09 / UU5 Modeling Prior-like Higher-Order Representations in DecNef with a Generative NERD Model
www.abstractsonline....
Reposted by Carsen Stringer
Journal of Undergraduate Neuroscience Education, Editor-in-Chief, now reporting for duty. 🫡
Catch me at the Faculty for Undergraduate Neuroscience Booth (3928) today and tomorrow from 2-3 pm if you want to chat about your manuscript or what JUNE is up to.
#SfN2025 #SfN25 @sfn.org
Catch me at the Faculty for Undergraduate Neuroscience Booth (3928) today and tomorrow from 2-3 pm if you want to chat about your manuscript or what JUNE is up to.
#SfN2025 #SfN25 @sfn.org
November 17, 2025 at 6:14 PM
Reposted by Carsen Stringer
To study how animals understand the physical world (and the rules that govern its dynamics), @jinyao-y.bsky.social trains rats to play fetch with robots 🐀🤖🎾
To learn more, come to our poster Tuesday morning!
[Board W11] Rats learn and use intuitive physics knowledge to solve fetch tasks.
#SfN2025
To learn more, come to our poster Tuesday morning!
[Board W11] Rats learn and use intuitive physics knowledge to solve fetch tasks.
#SfN2025
November 18, 2025 at 1:16 AM
To study how animals understand the physical world (and the rules that govern its dynamics), @jinyao-y.bsky.social trains rats to play fetch with robots 🐀🤖🎾
To learn more, come to our poster Tuesday morning!
[Board W11] Rats learn and use intuitive physics knowledge to solve fetch tasks.
#SfN2025
To learn more, come to our poster Tuesday morning!
[Board W11] Rats learn and use intuitive physics knowledge to solve fetch tasks.
#SfN2025
Reposted by Carsen Stringer
📢 Apply now for the first DL@Janelia Bootcamp (June 4–18, 2026)! 2 weeks of hands-on deep learning for microscopy: train models on your own data, Python needed (no ML experience), housing + meals included, no registration fee
📍 Janelia Research Campus, VA
🗓️ Apply by Jan 15, 2026
🔗 shorturl.at/j4sgY
📍 Janelia Research Campus, VA
🗓️ Apply by Jan 15, 2026
🔗 shorturl.at/j4sgY
November 6, 2025 at 6:56 PM
📢 Apply now for the first DL@Janelia Bootcamp (June 4–18, 2026)! 2 weeks of hands-on deep learning for microscopy: train models on your own data, Python needed (no ML experience), housing + meals included, no registration fee
📍 Janelia Research Campus, VA
🗓️ Apply by Jan 15, 2026
🔗 shorturl.at/j4sgY
📍 Janelia Research Campus, VA
🗓️ Apply by Jan 15, 2026
🔗 shorturl.at/j4sgY
Reposted by Carsen Stringer
Friends at #SFN25: Want to know more about how seeing is transformed into familiarity? Check out Simon Bohn's poster this afternoon (Board P9; PSTR224.03).
There, he'll tell you about a pardox and its resolution - along with a previously undescribed computation in the medial temporal lobe.
There, he'll tell you about a pardox and its resolution - along with a previously undescribed computation in the medial temporal lobe.
November 17, 2025 at 2:42 PM
Friends at #SFN25: Want to know more about how seeing is transformed into familiarity? Check out Simon Bohn's poster this afternoon (Board P9; PSTR224.03).
There, he'll tell you about a pardox and its resolution - along with a previously undescribed computation in the medial temporal lobe.
There, he'll tell you about a pardox and its resolution - along with a previously undescribed computation in the medial temporal lobe.
Reposted by Carsen Stringer
We ate well last night (in a tent, indoors, with s'mores for dessert), and are energized to talk science today at #SfN2025. Come visit our posters:
AA14 this morning
Y11, GG13, HH11 this afternoon
AA14 this morning
Y11, GG13, HH11 this afternoon
November 17, 2025 at 1:42 PM
We ate well last night (in a tent, indoors, with s'mores for dessert), and are energized to talk science today at #SfN2025. Come visit our posters:
AA14 this morning
Y11, GG13, HH11 this afternoon
AA14 this morning
Y11, GG13, HH11 this afternoon