Carsen Stringer
@computingnature.bsky.social
group leader @ HHMIJanelia, #neuroscience + AI 🔬 #cellpose | diversity and open-science for better science | Ⓥ | she/her | https://mouseland.github.io
Pinned
What if… spontaneous neural activity 🧠 reflects the baseline rumblings of a brainwide dynamical system initialized for learning? We find that the rumblings have macroscopic properties like those emerging from linear symmetric, critical systems 🧵 #neuroscience #neuroAI www.biorxiv.org/content/10.1...
Reposted by Carsen Stringer
This account also feels in line with some of what other people that have been in Broadview have shared.
Lawsuit Alleges Inhumane Conditions at Broadview ICE Facility
Federal authorities moved two plaintiffs in the suit out of state; a judge has ordered they be returned Monday.
southsideweekly.com
November 7, 2025 at 3:40 AM
This account also feels in line with some of what other people that have been in Broadview have shared.
Reposted by Carsen Stringer
Thrilled that our paper is out today in Nature!
www.nature.com/articles/s4...
www.nature.com/articles/s4...
Sensory expectations shape neural population dynamics in motor circuits
Nature - Experiments with human volunteers and macaques show that expectations produced by probabilistic cueing of future sensory inputs shape motor circuit dynamics in order to increase the...
www.nature.com
October 29, 2025 at 4:11 PM
Thrilled that our paper is out today in Nature!
www.nature.com/articles/s4...
www.nature.com/articles/s4...
Reposted by Carsen Stringer
Applying for faculty jobs this cycle? Check out our latest special episode! @moeneuro.bsky.social and @drnancypadilla.bsky.social discuss when to apply, important considerations when preparing applications, and more! Listen below!
www.storiesofwin.org/profiles/202...
#AcademicBluesky #NeuroJobs
www.storiesofwin.org/profiles/202...
#AcademicBluesky #NeuroJobs
Applying to faculty jobs 101 — Stories of WiN
This episode features Dr. Monique Smith (Assistant Professor, UCSD) discussing faculty job applications with host Dr. Nancy Padilla-Coreano.
www.storiesofwin.org
October 17, 2025 at 2:38 PM
Applying for faculty jobs this cycle? Check out our latest special episode! @moeneuro.bsky.social and @drnancypadilla.bsky.social discuss when to apply, important considerations when preparing applications, and more! Listen below!
www.storiesofwin.org/profiles/202...
#AcademicBluesky #NeuroJobs
www.storiesofwin.org/profiles/202...
#AcademicBluesky #NeuroJobs
Reposted by Carsen Stringer
Reposted by Carsen Stringer
We had 5k in Leesburg, VA. Much larger turnout than 4/5/25. Police shut down the streets around the courthouse, no issues. It was a really good time!
October 18, 2025 at 9:24 PM
We had 5k in Leesburg, VA. Much larger turnout than 4/5/25. Police shut down the streets around the courthouse, no issues. It was a really good time!
Reposted by Carsen Stringer
We have a shot at participating in the biggest protest in US history. Especially if you show up. Find an event near you. Don't miss No Kings II!
www.nokings.org
www.nokings.org
No Kings
As the president escalates his authoritarian power grab, the NO KINGS non-violent movement continues to rise stronger. We are united once again to remind the world: America has No Kings and the power ...
www.nokings.org
October 17, 2025 at 6:56 PM
We have a shot at participating in the biggest protest in US history. Especially if you show up. Find an event near you. Don't miss No Kings II!
www.nokings.org
www.nokings.org
Reposted by Carsen Stringer
And now UVa rejects the compact.
October 17, 2025 at 9:08 PM
And now UVa rejects the compact.
Reposted by Carsen Stringer
🧠Talk about having guts! 💪Embryonic mouse intestines stained for ❤️💚 nerves and 💙 endothelial cells, forming the early circuits that keep things moving (literally!) 🔬 Image by Nathan Burns. #FluorescenceFriday #DevBio
October 17, 2025 at 9:07 PM
🧠Talk about having guts! 💪Embryonic mouse intestines stained for ❤️💚 nerves and 💙 endothelial cells, forming the early circuits that keep things moving (literally!) 🔬 Image by Nathan Burns. #FluorescenceFriday #DevBio
Reposted by Carsen Stringer
Today for #FluorescenceFriday I’m sharing a 👻Halloween-themed🎃 neural crest explant “web of cells” from Julia Godinez, a 4th year @ucdavis.bsky.social graduate student in the lab. She is studying mechanisms driving conserved and divergent cranial neural crest migration and differentiation. #DevBio
October 17, 2025 at 8:21 PM
Today for #FluorescenceFriday I’m sharing a 👻Halloween-themed🎃 neural crest explant “web of cells” from Julia Godinez, a 4th year @ucdavis.bsky.social graduate student in the lab. She is studying mechanisms driving conserved and divergent cranial neural crest migration and differentiation. #DevBio
Reposted by Carsen Stringer
Join the 2025 UCL Neuropixels course (free and online!),
22-24th of October:
Day 1 and 2: Get started with the basics and the latest updates on hardware & software.
Day 3: Focus on how to analyse the many neurons you recorded.
More info and to register:
www.ucl.ac.uk/neuropixels/...
22-24th of October:
Day 1 and 2: Get started with the basics and the latest updates on hardware & software.
Day 3: Focus on how to analyse the many neurons you recorded.
More info and to register:
www.ucl.ac.uk/neuropixels/...
2025 Neuropixels course
A free online course on Neuropixels, 22-24 October 2025
www.ucl.ac.uk
September 16, 2025 at 4:36 PM
Join the 2025 UCL Neuropixels course (free and online!),
22-24th of October:
Day 1 and 2: Get started with the basics and the latest updates on hardware & software.
Day 3: Focus on how to analyse the many neurons you recorded.
More info and to register:
www.ucl.ac.uk/neuropixels/...
22-24th of October:
Day 1 and 2: Get started with the basics and the latest updates on hardware & software.
Day 3: Focus on how to analyse the many neurons you recorded.
More info and to register:
www.ucl.ac.uk/neuropixels/...
Reposted by Carsen Stringer
Pleased to have this review out in @cp-trendsneuro.bsky.social. In it we discuss various aspects of the intersection between foraging behaviors and neuroscience, and offer some future directions: www.sciencedirect.com/science/arti...
Foraging as an ethological framework for neuroscience
The study of foraging is central to a renewed interest in naturalistic behavior in neuroscience. Applying a foraging framework grounded in behavioral …
www.sciencedirect.com
October 7, 2025 at 12:58 PM
Pleased to have this review out in @cp-trendsneuro.bsky.social. In it we discuss various aspects of the intersection between foraging behaviors and neuroscience, and offer some future directions: www.sciencedirect.com/science/arti...
Reposted by Carsen Stringer
🚨Big news!🚨
The lab is relocating to Lisbon, joining a great team of experimental and theoretical neuroscientists, and the Neurotechnology Warehouse, a new initiative to bridge basic and translational research.
I'll be sharing postdoc openings soon. Come join us in this new incarnation of the lab!
The lab is relocating to Lisbon, joining a great team of experimental and theoretical neuroscientists, and the Neurotechnology Warehouse, a new initiative to bridge basic and translational research.
I'll be sharing postdoc openings soon. Come join us in this new incarnation of the lab!
🧠🎼 What does it take to restore movement? Neuroscientist and engineer, @juangallego.bsky.social, joins the new Centre for Restorative Neurotechnology at the Champalimaud Foundation.
🔗 Find out more in this interview: www.fchampalimaud.org/news/juan-al...
🔗 Find out more in this interview: www.fchampalimaud.org/news/juan-al...
October 7, 2025 at 4:37 PM
🚨Big news!🚨
The lab is relocating to Lisbon, joining a great team of experimental and theoretical neuroscientists, and the Neurotechnology Warehouse, a new initiative to bridge basic and translational research.
I'll be sharing postdoc openings soon. Come join us in this new incarnation of the lab!
The lab is relocating to Lisbon, joining a great team of experimental and theoretical neuroscientists, and the Neurotechnology Warehouse, a new initiative to bridge basic and translational research.
I'll be sharing postdoc openings soon. Come join us in this new incarnation of the lab!
Reposted by Carsen Stringer
#geff v1 is released! 🎉 GEFF is a zarr-based Graph Exchange File Format with special support for tracking applications in Python and Java. Thank you to all the amazing developers who contributed at the Janelia 2025 Trackathon! liveimagetrackingtools.org/geff/
October 7, 2025 at 8:24 PM
#geff v1 is released! 🎉 GEFF is a zarr-based Graph Exchange File Format with special support for tracking applications in Python and Java. Thank you to all the amazing developers who contributed at the Janelia 2025 Trackathon! liveimagetrackingtools.org/geff/
Reposted by Carsen Stringer
Our first preprint has been accepted for publication www.science.org/doi/10.1126/... !!
tldr: @ezeyulu00.bsky.social , @amartyapradhan.bsky.social , @dkoveal.bsky.social and I developed a method using injectable nanoparticles to turn mice into…constellations in motion. 🧵⤵️
tldr: @ezeyulu00.bsky.social , @amartyapradhan.bsky.social , @dkoveal.bsky.social and I developed a method using injectable nanoparticles to turn mice into…constellations in motion. 🧵⤵️
High-resolution in vivo kinematic tracking with customized injectable fluorescent nanoparticles
Injectable fluorescent nanoparticles were used to track positions on and inside of freely moving animals at high resolution.
www.science.org
October 2, 2025 at 7:45 PM
Our first preprint has been accepted for publication www.science.org/doi/10.1126/... !!
tldr: @ezeyulu00.bsky.social , @amartyapradhan.bsky.social , @dkoveal.bsky.social and I developed a method using injectable nanoparticles to turn mice into…constellations in motion. 🧵⤵️
tldr: @ezeyulu00.bsky.social , @amartyapradhan.bsky.social , @dkoveal.bsky.social and I developed a method using injectable nanoparticles to turn mice into…constellations in motion. 🧵⤵️
Reposted by Carsen Stringer
BREAKING: WE WON!!!
💥 💥 💥
Federal Judge William G. Young ruled today in our lawsuit against the Trump administration that the policy of arresting, detaining, & deporting noncitizen students & faculty members for their pro-Palestinian advocacy violates the 1st Amendment.
Full ruling here:
💥 💥 💥
Federal Judge William G. Young ruled today in our lawsuit against the Trump administration that the policy of arresting, detaining, & deporting noncitizen students & faculty members for their pro-Palestinian advocacy violates the 1st Amendment.
Full ruling here:
Findings of Fact & Conclusions of Law – #261 in American Association of University Professors v. Rubio (D. Mass., 1:25-cv-10685) – CourtListener.com
Judge William G. Young: ORDER entered. FINDINGS OF FACT AND RULINGS OF LAW, PURSUANT TO FED. R. CIV. P. 52(A)(Sonnenberg, Elizabeth) (Additional attachment(s) added on 9/30/2025: # 1 Main Document) (J...
www.courtlistener.com
September 30, 2025 at 5:43 PM
BREAKING: WE WON!!!
💥 💥 💥
Federal Judge William G. Young ruled today in our lawsuit against the Trump administration that the policy of arresting, detaining, & deporting noncitizen students & faculty members for their pro-Palestinian advocacy violates the 1st Amendment.
Full ruling here:
💥 💥 💥
Federal Judge William G. Young ruled today in our lawsuit against the Trump administration that the policy of arresting, detaining, & deporting noncitizen students & faculty members for their pro-Palestinian advocacy violates the 1st Amendment.
Full ruling here:
Reposted by Carsen Stringer
Our new study featured in The Transmitter by @lauren-schneider.com! 🎉 Big thanks to @zeronoiselab.bsky.social and @computingnature.bsky.social for their comments on the work.
Facial movements reflect a mouse’s decision-making patterns independent of their chosen action during a foraging task, per a new study.
By @lauren-schneider.com
#neuroskyence
www.thetransmitter.org/motor-behavi...
By @lauren-schneider.com
#neuroskyence
www.thetransmitter.org/motor-behavi...
September 30, 2025 at 2:42 PM
Our new study featured in The Transmitter by @lauren-schneider.com! 🎉 Big thanks to @zeronoiselab.bsky.social and @computingnature.bsky.social for their comments on the work.
Reposted by Carsen Stringer
Mice do play with humans:
Our new study found that selective breeding makes mice more playful toward both humans and other mice.
We also found that both mice and hamsters produce distinct vocalizations depending on the species of their interaction partner.
authors.elsevier.com/a/1lsK5_3oCG...
Our new study found that selective breeding makes mice more playful toward both humans and other mice.
We also found that both mice and hamsters produce distinct vocalizations depending on the species of their interaction partner.
authors.elsevier.com/a/1lsK5_3oCG...
authors.elsevier.com
September 30, 2025 at 11:05 AM
Mice do play with humans:
Our new study found that selective breeding makes mice more playful toward both humans and other mice.
We also found that both mice and hamsters produce distinct vocalizations depending on the species of their interaction partner.
authors.elsevier.com/a/1lsK5_3oCG...
Our new study found that selective breeding makes mice more playful toward both humans and other mice.
We also found that both mice and hamsters produce distinct vocalizations depending on the species of their interaction partner.
authors.elsevier.com/a/1lsK5_3oCG...
Reposted by Carsen Stringer
@scadsai.bsky.social training coordinator @haesleinhuepf.bsky.social provided insights into his professional career in the podcast series “The Microscopists.”
If you want to know why he'll never ask biologists for better images again, click here:
🍍 themicroscopists.bitesizebio.com/episodes/rob...
If you want to know why he'll never ask biologists for better images again, click here:
🍍 themicroscopists.bitesizebio.com/episodes/rob...
September 30, 2025 at 9:47 AM
@scadsai.bsky.social training coordinator @haesleinhuepf.bsky.social provided insights into his professional career in the podcast series “The Microscopists.”
If you want to know why he'll never ask biologists for better images again, click here:
🍍 themicroscopists.bitesizebio.com/episodes/rob...
If you want to know why he'll never ask biologists for better images again, click here:
🍍 themicroscopists.bitesizebio.com/episodes/rob...
Reposted by Carsen Stringer
Did you know that facial expressions reveal more than meets the eye? 🤯
Our new study shows that even a mouse's face 🐭 can reflect hidden neural computations🧠. Turns out, facial expressions are more than just emotions!
We're so excited to see this paper out @natneuro.nature.com 🎉
🔗: rdcu.be/eIQzO
Our new study shows that even a mouse's face 🐭 can reflect hidden neural computations🧠. Turns out, facial expressions are more than just emotions!
We're so excited to see this paper out @natneuro.nature.com 🎉
🔗: rdcu.be/eIQzO
Facial expressions in mice reveal latent cognitive variables and their neural correlates
Nature Neuroscience - The face reveals more than just emotion. Cazettes, Reato and colleagues show that subtle facial movements reveal hidden cognitive states, reflecting the brain’s ongoing...
rdcu.be
September 30, 2025 at 11:30 AM
Did you know that facial expressions reveal more than meets the eye? 🤯
Our new study shows that even a mouse's face 🐭 can reflect hidden neural computations🧠. Turns out, facial expressions are more than just emotions!
We're so excited to see this paper out @natneuro.nature.com 🎉
🔗: rdcu.be/eIQzO
Our new study shows that even a mouse's face 🐭 can reflect hidden neural computations🧠. Turns out, facial expressions are more than just emotions!
We're so excited to see this paper out @natneuro.nature.com 🎉
🔗: rdcu.be/eIQzO
Reposted by Carsen Stringer
One thing that comforts me in the current era is that, despite everything, really cool science continues to be published:
www.science.org/doi/10.1126/...
This could be a breakthrough for managing so many autoimmune diseases (still, in mice—don't get too excited).
www.science.org/doi/10.1126/...
This could be a breakthrough for managing so many autoimmune diseases (still, in mice—don't get too excited).
Adenosine 2A receptor–dependent activation of AMPK represses TH17 cell pathogenicity through epigenetic and metabolic reprogramming
Epigenetic reprogramming that promotes oxidative metabolism suppresses TH17 cell pathogenicity.
www.science.org
September 24, 2025 at 8:48 PM
One thing that comforts me in the current era is that, despite everything, really cool science continues to be published:
www.science.org/doi/10.1126/...
This could be a breakthrough for managing so many autoimmune diseases (still, in mice—don't get too excited).
www.science.org/doi/10.1126/...
This could be a breakthrough for managing so many autoimmune diseases (still, in mice—don't get too excited).
Reposted by Carsen Stringer
The WB-ExM protocol described here works with.... every sample we tested! Here a 3do quail embryo (white= pan-protein; red=MF20) www.biorxiv.org/content/10.1...
September 19, 2025 at 7:39 PM
The WB-ExM protocol described here works with.... every sample we tested! Here a 3do quail embryo (white= pan-protein; red=MF20) www.biorxiv.org/content/10.1...
Reposted by Carsen Stringer
New preprint! How can you remember an image you saw once, even after seeing thousands of them? We find a role for humble mid-level visual cortex in high-capacity, one-shot learning. doi.org/10.1101/2025.09.22.677855 🧵🧪1/
Neuronal signatures of successful one-shot memory in mid-level visual cortex
High-capacity, one-shot visual recognition memory challenges theories of learning and neural coding because it requires rapid, robust, and durable representations. Most studies have focused on the hip...
doi.org
September 23, 2025 at 3:09 PM
New preprint! How can you remember an image you saw once, even after seeing thousands of them? We find a role for humble mid-level visual cortex in high-capacity, one-shot learning. doi.org/10.1101/2025.09.22.677855 🧵🧪1/
Is visual cortex more like chatGPT or a masked autoencoder? Come to my BCCN seminar tomorrow at 10am ET on zoom (or read the paper) to find out! #neuroscience
Zoom: urldefense.com/v3/__https:/...
Paper: www.biorxiv.org/content/10.1...
Zoom: urldefense.com/v3/__https:/...
Paper: www.biorxiv.org/content/10.1...
Does predictive coding work in SPACE or in TIME? Most neuroscientists assume TIME, i.e. neurons predict their future sensory inputs. We show that in visual cortex predictive coding actually works across SPACE, just like the original Rao+Ballard theory #neuroscience
www.biorxiv.org/cgi/content/...
www.biorxiv.org/cgi/content/...
September 23, 2025 at 1:23 PM
Is visual cortex more like chatGPT or a masked autoencoder? Come to my BCCN seminar tomorrow at 10am ET on zoom (or read the paper) to find out! #neuroscience
Zoom: urldefense.com/v3/__https:/...
Paper: www.biorxiv.org/content/10.1...
Zoom: urldefense.com/v3/__https:/...
Paper: www.biorxiv.org/content/10.1...