Ksenia Krasileva
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kseniakrasileva.bsky.social
Ksenia Krasileva
@kseniakrasileva.bsky.social
Associate Professor UC Berkeley, puzzle-solver
Pinned
🚀 New preprint!
We introduce K-PROB, a k-mer–based Bayesian framework that mines pangenomic promoter and expression diversity to predict cis-regulatory elements driving gene expression variation in crops 🌽🌱
🔗 biorxiv.org/content/10.1101/2025.10.27.684862v1
#Genomics #GeneRegulation #Maize #Soybean
Natural variation in regulatory code revealed through Bayesian analysis of plant pan-genomes and pan-transcriptomes
Understanding the genetic code of cis-regulatory elements (CREs) is essential for engineering gene expression and modulating agronomic traits in crops. In plants, CREs underlying rapid evolution of ge...
biorxiv.org
Reposted by Ksenia Krasileva
Outstanding preprint from @leocastanedo.bsky.social, @katharinamel1.bsky.social, @pierremarcdelaux.bsky.social and coll. on an evolutionary conserved module for intracellular symbiosis. - > Symbiotic diversification relies on an ancestral gene network in plants | bioRxiv
Symbiotic diversification relies on an ancestral gene network in plants | bioRxiv
Symbioses have been fundamental to colonization of terrestrial ecosystems by plants and their evolution. Emergence of the ancient arbuscular mycorrhizal symbiosis was followed by the diversification of alternative intracellular symbioses, such as the ericoid mycorrhizae (ErM). We aimed at understanding how these diversifications occurred. We sequenced the genomes of ErM-forming liverworts, and reconstituted symbiosis under laboratory conditions. We demonstrated the existence of a nutrient-regulated symbiotic state that enables ErM and underlies intracellular colonization of plant tissues. Comparative transcriptomic analyses identified an ancestral gene module associated with intracellular symbiosis beyond ErM. Genetic manipulations in the liverwort Marchantia paleacea, phylogenetics and transactivation assays demonstrated its essential function for intracellular symbiosis. We conclude that plant have maintained, and convergently recruited, an ancestral gene module for intracellular symbioses.
sco.lt
November 4, 2025 at 2:55 PM
Reposted by Ksenia Krasileva
Thanks! K-PROB GitHub link now in the preprint!
Try our k-mer–based tool for causal element discovery for pan-genomes 🌱🧬
October 29, 2025 at 5:00 PM
🚀 New preprint!
We introduce K-PROB, a k-mer–based Bayesian framework that mines pangenomic promoter and expression diversity to predict cis-regulatory elements driving gene expression variation in crops 🌽🌱
🔗 biorxiv.org/content/10.1101/2025.10.27.684862v1
#Genomics #GeneRegulation #Maize #Soybean
Natural variation in regulatory code revealed through Bayesian analysis of plant pan-genomes and pan-transcriptomes
Understanding the genetic code of cis-regulatory elements (CREs) is essential for engineering gene expression and modulating agronomic traits in crops. In plants, CREs underlying rapid evolution of ge...
biorxiv.org
October 29, 2025 at 4:47 PM
Reposted by Ksenia Krasileva
The Department of Biology at UNC-Chapel Hill is searching for an organismal biologist whose research is focused on resilience.

unc.peopleadmin.com/postings/307...
Assistant Professor (Organismal Biologist)
The Department of Biology at UNC Chapel Hill will employ a tenure-track position in Organismal Biology at the Assistant Professor level.The Assistant Professor studies resilience using the organism as...
unc.peopleadmin.com
October 20, 2025 at 8:08 PM
Reposted by Ksenia Krasileva
For population genetics and evolutionary biology folks in the Bay Area: the next BAPG will be hosted by Stanford CEHG and the Petrov lab at Stanford on 12/6.
Registration is free but required. The deadline for talk submission is Nov. 16. Hope to see you soon! Pls RT!
docs.google.com/forms/d/e/1F...
docs.google.com
October 20, 2025 at 10:42 PM
Reposted by Ksenia Krasileva
#Candida albicans is a leading opportunistic fungal #pathogen of humans. Ci Fu, Leah Cowen &co expand the GRACE #Calbicans #FunctionalGenomics resource, identifying genes important for temperature-dependent fitness & highlighting its power to reveal vulnerabilities @plosbiology.org 🧪 plos.io/3Wft0Xg
October 20, 2025 at 5:11 PM
Reposted by Ksenia Krasileva
I just spent 40 min watching a YouTube video about AgriStarts (www.agristarts.com), a tissue culture company that produce 30 million plants/year for horticultural crops (e.g., houseplants, berries). Really impressed. Highly recommend the video.

www.youtube.com/watch?v=l-TB...
The Laboratory That Creates Your Houseplants
YouTube video by Plants in Jars
www.youtube.com
October 18, 2025 at 3:41 PM
Reposted by Ksenia Krasileva
When women researchers publish, media attention doesn’t always follow | Science | AAAS www.science.org/content/arti...
When women researchers publish, media attention doesn’t always follow
Men-led papers receive more media coverage than women’s, new study finds
www.science.org
October 13, 2025 at 1:01 AM
Reposted by Ksenia Krasileva
Sir David Attenborough, the British documentarian and naturalist, became the oldest person to win a Daytime Emmy on Friday at age 99. He beat the record set last year by Dick Van Dyke. www.nytimes.com/2025/10/18/a...
October 18, 2025 at 7:03 PM
Reposted by Ksenia Krasileva
NYPD announces that zero arrests were made at the massive No Kings protests today after Republicans spent days claiming the protestors are violent terrorists.
October 18, 2025 at 8:44 PM
Reposted by Ksenia Krasileva
"Assistant Professor - Plant Resilience to Climate Change at University of California Berkeley, Berkeley, CA, USA
*Application Deadline: 11/1/2025"

Read more here: https://arabidopsis.org/news/jobs/view?file=job_10-16-25.pdf

#PlantSciJobs
October 16, 2025 at 8:36 PM
Reposted by Ksenia Krasileva
Perfect timing in the field for a beautiful review on NAD+ in bacterial immunity by @hugovaysset.bsky.social and @audeber.bsky.social @cp-molcell.bsky.social

#MicroSky

www.cell.com/molecular-ce...
October 16, 2025 at 2:58 PM
Reposted by Ksenia Krasileva
Registration open for #Fungal26 genetics-gsa.org/fungal-2026/ at Asilomar.
Homepage - 33rd Fungal Genetics Conference
Visit our website to learn more.
genetics-gsa.org
October 16, 2025 at 5:59 PM
Reposted by Ksenia Krasileva
We have a bunch of new job ads out @arcadiascience.com. If you haven’t checked them out, take a look!

www.arcadiascience.com/careers
Careers | Arcadia Science
Evolve with Arcadia.
www.arcadiascience.com
October 16, 2025 at 2:45 AM
Reposted by Ksenia Krasileva
Rewriting the code of plant immunity go.nature.com/475WgV7
October 14, 2025 at 8:25 PM
Reposted by Ksenia Krasileva
3 unexpected things we owe to the plant pathogenic bacterium Xanthomonas kamounlab.medium.com/3-unexpected...
3 unexpected things we owe to the plant pathogenic bacterium Xanthomonas
I have a special relationship with the bacterium Xanthomonas. As a grad student at UC Davis, I did my thesis research on Xanthomonas…
kamounlab.medium.com
October 14, 2025 at 1:05 PM
Reposted by Ksenia Krasileva
Dr. Jane Goodall filmed an interview with Netflix in March 2025 that she understood would only be released after her death.
October 5, 2025 at 9:08 AM
Reposted by Ksenia Krasileva
Thinking about a postdoc in microbiome science?
Our lab at the MPI for Biology (Tübingen) builds on the culture I established at Cornell: collaborative, creative, and internationally diverse. Postdocs lead their own projects with secure funding. Join us!
#PostdocJobs #HostMicrobe #AcademicJobs
October 4, 2025 at 5:37 PM
Reposted by Ksenia Krasileva
Start independent research at the JIC with us 👇.

Really interested in finding those with an interest in structural biology and biochemistry of plants and microbes.

Please do get in touch by email if you'd like to know more 👍
VACANCY - Independent research fellowships leading to tenured positions

We’re inviting applications from outstanding researchers who either hold, or wish to apply for, Independent Research Fellowships.

APPLICATION DEADLINE: 10 November 2025

Click here to apply: jic.link/Fellows
October 3, 2025 at 6:36 PM
Reposted by Ksenia Krasileva
Only a few days left to apply!

My group is looking for a postdoc to engineer and deploy new tools to precisely manipulate and decode how auxin coordinates plant morphogenesis.

@starmorph-syg.bsky.social

Research Associate - Reprogramming Development (closes 7 October 2025)
www.cam.ac.uk
October 3, 2025 at 3:34 PM
Reposted by Ksenia Krasileva
Reposted by Ksenia Krasileva
Fantastic PhD opportunity to join myself, Nicola Patron and @lichmanlab.bsky.social in uncovering the biosynthesis and function of lettuce sesquiterpene lactones. 4-year fully-funded combining molecular & engineering biology, & plant pathology.

Deadline Nov 25th

www.findaphd.com/phds/project...
The biosynthesis and immunity function of lettuce sesquiterpene lactones at Gatsby Charitable Foundation on FindAPhD.com
PhD Project - The biosynthesis and immunity function of lettuce sesquiterpene lactones at Gatsby Charitable Foundation, listed on FindAPhD.com
www.findaphd.com
October 2, 2025 at 4:18 PM
Reposted by Ksenia Krasileva
Super excited to see our work on the NLRseek program finally published 🥳 Here we identify new NLRs against major wheat pathogens and present a pipeline for NLR identification. Huge thank you to all of the co-authors for bringing this work together! @matthewmoscou.bsky.social rdcu.be/eIGvv
Discovery of functional NLRs using expression level, high-throughput transformation and large-scale phenotyping
Nature Plants - Rapid discovery of functional resistance genes is enabled by a high-expression signature and high-throughput transformation. This approach identified 31 new resistance genes for...
rdcu.be
September 29, 2025 at 11:58 AM
Reposted by Ksenia Krasileva
A recent cool preprint by John Whitney's lab on a new family of antibacterial proteins secreted by Gram-positive bacteria that enter and kill a broad spectrum of bacteria. Cell entry is receptor-independent and relies on cleavage by a co-secreted protease and the PMF.
www.biorxiv.org/content/10.1...
Proteolytically activated antibacterial toxins inhibit the growth of diverse Gram-positive bacteria
Many species of bacteria produce small-molecule antibiotics that enter and kill a wide range of competitor microbes. However, diffusible antibacterial proteins that share this broad-spectrum activity ...
www.biorxiv.org
September 23, 2025 at 8:28 PM