Ines Patop
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inespatop.bsky.social
Ines Patop
@inespatop.bsky.social
#RNA neurobiologist
Postdoc at Stirling Churchman lab with a lot of crosstalk with Mike Greenberg Lab. Harvard Medical School
Reposted by Ines Patop
🚨🚨🚨

Please RT!

We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.

Deadline: 30/09/25👇
www.upf.edu
July 23, 2025 at 2:28 PM
This is so cool!
📽️ G&D Tapes 📽️

G&D author, Noah Helton tells us about their new study in #genesdev, revealing an intriguing link between stress granule formation and the integrated stress response. #OpenAccess @smslmoon.bsky.social

Read the full story here:
➡️ tinyurl.com/gd352899
July 9, 2025 at 1:40 AM
Reposted by Ines Patop
Hey #Drosophila folks ! #FlyCROSS is back and #Mentor surveys are open NOW ! If you're a faculty/postdoc/ equivalent in any scientific career & have #Drosophila research experience - we'd be delighted to have you as mentors to empower early career scientists in the #Dros community !
Summer 2025 Survey For Mentors : FlyCROSS Mentor Mentee Matching Program
We appreciate you taking the time and volunteering to be a mentor! Add dmelcross@gmail.com to your email address book or safe sender list, so that you can receive our emails. To be a participating me...
docs.google.com
June 2, 2025 at 11:49 PM
Reposted by Ines Patop
Very excited to share our new paper out now in
@MolecularCell. We show how U1 snRNP -a well-known splicing factor- regulates the activity of alternative promoters in human cells www.cell.com/molecular-ce...
U1 snRNP regulates alternative promoter activity by inhibiting premature polyadenylation
Kim et al. uncover a role for U1 snRNP in regulating internal promoter activity. Beyond its canonical role in splicing, U1 snRNP suppresses premature polyadenylation, enabling upstream transcription t...
www.cell.com
May 16, 2025 at 3:35 PM
Reposted by Ines Patop
The timeline of co-transcriptional #mRNA processing and #modification may have to be revised: cleavage, termination, and #m6A deposition may occur earlier than most #splicing! Potential textbook changing study in bioRxiv by edueyras.bsky.social & Rippei Hayashi labs!
www.biorxiv.org/content/10.1...
Single-molecule multimodal timing of in vivo mRNA synthesis
mRNA synthesis requires extensive pre-mRNA maturation, the organisation of which remains unclear. Here, we directly sequence pre-mRNA without metabolic labelling or amplification to resolve transcript...
www.biorxiv.org
April 29, 2025 at 8:31 PM
This sounds really really fun and useful.
BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...
May 2, 2025 at 4:47 PM
This is SO useful for the community. Models for PD, SD, and more at the end of a click. Thanks Jax and all the people that made this possible!
April 19, 2025 at 3:51 PM
Reposted by Ines Patop
Why can a human tolerate a drug that globally inhibits transcription? Why do transcription inhibitors not cure cancer? Our first paper of 2025 may help explain (some) of this!

So incredibly proud of @tobiaswilliams.bsky.social & Ewa Michalak who led the work!

www.cell.com/molecular-ce...
mRNA export factors store nascent transcripts within nuclear speckles as an adaptive response to transient global inhibition of transcription
Transcription inhibitors also disrupt nuclear export. Here, Williams et al. reveal that mRNA export factors sense transcription inhibition and adapt by storing mature export-competent mRNA in nuclear speckles. This enables rapid release when transcription resumes and ensures retention of cellular identity and viability during a transient global transcription insult.
www.cell.com
January 2, 2025 at 8:03 PM
I can’t be more proud of our team of amazing scientists. We had a great conference with science talks, career panels, and networking sessions!

We got RAs, students, postdocs, Pis, and scientists working in academia, industry, and policy.

I am inspired, proud, and energized (and also tired ;)
Today we hosted the first New England LatinX Conference! We thank the science and panel speakers, all the 150 participants, our co-organizers (@giosg.bsky.social and the NEx scientists, and the Harvard GSAS LatinX students), and sponsors (New England Biolabs, Guilliam Fellows Program, and Beantown)
April 12, 2025 at 11:04 PM
And on other news. My first contribution to science as a postdoc with @stirlingchurchman.bsky.social is out! We discuss the knowns and unknowns of post-transcriptional splicing. It was really fun to write with the great @karinechoquet
April 11, 2025 at 7:29 PM
It’s so nice to see this work finally out! It developed so much since its early days. The idea of long lived RNA as experience decoys is huge. Still a lot of work to be done but this is a great first step forward. Happy to have been part of it!
April 10, 2025 at 11:41 PM
Reposted by Ines Patop
@evapillai.bsky.social and I had fun writing a brief comment www.science.org/doi/10.1126/... (originally featuring an enlightening comparison to a soufflé au fromage that unfortunately disappeared from the final version per Science house style)
Archaea go multicellular under pressure
A microbe from the Dead Sea switches to a tissue-like form when compressed
www.science.org
April 3, 2025 at 6:51 PM
Reposted by Ines Patop
💫 New preprint from the lab: Comparing great ape cerebral organoids, we found that human-specific morphoregulatory signatures in basal radial glia characterise neocortex evolution. Fantastic work from super-talented PhD student Theresa Schütze!

www.biorxiv.org/content/10.1...
March 13, 2025 at 10:11 AM
So so cool
March 12, 2025 at 11:57 AM
Reposted by Ines Patop
Metascience and AI Postdoctoral Fellowships
Grants of up to $250,000 (USD) over up to two years will be awarded to social sciences and humanities postdoctoral researchers who study the implication of AI for Science.
Deadline: April 10, 2025
@sloanfoundation.bsky.social
🧪
sloan.org/programs/dig...
Call for submissions: Metascience and AI postdoctoral fellowship | Alfred P. Sloan Foundation
Our mission is to make the world a better place through the advancement of scientific knowledge.
sloan.org
March 2, 2025 at 1:57 AM
Reposted by Ines Patop
Excited to share the work of Jonathan Perr where he uncovered a surprisingly common feature of cell surfaces - the presentation and clustering of RNA binding proteins with #glycoRNA.

Critically support by #NIH @cp-cell.bsky.social www.cell.com/cell/abstrac...
RNA-binding proteins and glycoRNAs form domains on the cell surface for cell-penetrating peptide entry
Mammalian cells present RNA-binding proteins on the cell surface that form clustered domains containing glycoRNAs.
www.cell.com
February 27, 2025 at 3:48 PM
Reposted by Ines Patop
February 26, 2025 at 2:58 PM
Reposted by Ines Patop
Sign-up for the next round of the rainbowR buddies scheme is open until Mar 2nd! Pairs will be introduced on Mar 3rd 🌈👯‍♂️

If you're LGBTQ+ and code in #RStats, and want an opportunity to connect with someone else in the community (through a random pairing), this is for you 😃

rainbowr.org/buddies
February 25, 2025 at 7:42 PM
Reposted by Ines Patop
HHMI Science Department is hiring! We are looking for an outstanding immunologist/ cancer biologist to join our senior leadership team. Remote work eligible, 24 weeks a year onsite, possibility of running a small lab with HHMI support

@hhmi.bsky.social

hhmi.wd1.myworkdayjobs.com/External/job...
Senior Director - Scientific Officer
Current HHMI Employees, click here to apply via your Workday account. The Howard Hughes Medical Institute (HHMI) advances the discovery and sharing of scientific knowledge to benefit us all. As a biom...
hhmi.wd1.myworkdayjobs.com
February 24, 2025 at 11:09 PM
Reposted by Ines Patop
Valérie Hilgers and co-workers @hilgerslab.bsky.social @mpi-ie.bsky.social and @zmbh.uni-heidelberg.de show that the conserved #neuronal #protein Pumilio differentially binds to mRNA 3′ UTR isoforms to regulate localization of synaptic proteins. #neuroscience

www.embopress.org/doi/full/10....
February 22, 2025 at 10:16 AM
Reposted by Ines Patop
It's @scipyconf.bsky.social submission time again! This year I am running the Bioinf/Comp Bio/Neuroscience track, covering how Python is advancing science and problem-solving in those fields. Let me know if y'all have questions, and looking forward to the submissions!
SciPy 2025
Schedule, talks and talk submissions for SciPy 2025
cfp.scipy.org
January 10, 2025 at 3:42 PM
Reposted by Ines Patop
😊🔬 Happy to share our preprint manuscript from my PhD! This study sheds light on stimuli specific activity-dependent gene expression and its changes during neuronal development in vitro. Looking forward to discussions and new perspectives!
Neuronal development shapes activity-dependent gene expression in a stimulus-specific manner https://www.biorxiv.org/content/10.1101/2025.02.19.638694v1
February 21, 2025 at 2:42 PM
Cool science with great people. Recommend!
If you like our visual biochemistry approach at the intersection of transcription and chromatin, consider applying to our lab as a post-doctoral researcher. More info here: farnunglab.com
We are also always looking for Masters students to conduct their thesis research in the Farnung Lab.
December 13, 2024 at 2:16 PM
Latin America and open access
This week on the @science.org Podcast: Latin America is a leader in nonprofit open-access journals. But it struggles to give them global visibility w/ @sofiamoutinho.bsky.social www.science.org/content/podc...
December 6, 2024 at 12:26 PM
Reposted by Ines Patop
#paperalert!
In our new study, we ask the question: Can we predict RNA stability across conditions and protocols, based solely on experimental and/or computationally predicted RNA binding protein target sites?
Read the paper to find out !

www.biorxiv.org/content/10.1...
Cell-type specific prediction of RNA stability from RNA-protein interactions
RNA-binding proteins (RBPs) are important contributors to post-transcriptional regulatory processes. The combinatorial action of expressed RBPs and non-coding factors bound to the same transcript dete...
www.biorxiv.org
December 4, 2024 at 12:48 PM