Francesco Scavone
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fscavone.bsky.social
Francesco Scavone
@fscavone.bsky.social
Biology @Stanford | Kopito lab | ubiquitin & UBLs, UFM1, ribosome, protein quality control, autophagy, endoplasmic reticulum | Foodbank volunteer | 🐘:@scavone@mas.to
📷: Sicilian landscape
Reposted by Francesco Scavone
We posted a biorxiv preprint on structural bioinformatics, AlphaFold modeling & machine learning on predicting specificity of E3 ligase ring domains for different E2 enzymes. 1/4

Preprint: www.biorxiv.org/content/10.6...

Models/data (UbiqCore website): dunbrack.fccc.edu/ubiqcore
February 17, 2026 at 5:03 AM
Reposted by Francesco Scavone
Mammalian cells form hibernating disomes akin to those in bacterial cells - but connected via ribosomal RNA

www.science.org/doi/10.1126/...

co-first with: @andschwarz.bsky.social

with: @lea-dietrich.bsky.social, @sgiando.bsky.social, @erin-schuman.bsky.social and many more

🧵 0/6
#MolBio 🧪
February 19, 2026 at 7:09 PM
Such a pleasure to share our commentary on #UFMylation client diversity published in @natrevmcb.nature.com. Thanks to @lisaheinke.bsky.social for the opportunity to write it, reviewers for their peer review contribution, and members of our lab for discussions.
Link: www.nature.com/articles/s41...
Evaluating evidence for UFMylation client diversity - Nature Reviews Molecular Cell Biology
The small ubiquitin-like modifier UFM1 is known to regulate the ribosomal subunit RPL26, but whether other bona fide substrates exist remains debated. This Comment discusses criteria for the experimen...
www.nature.com
February 16, 2026 at 8:27 PM
Reposted by Francesco Scavone
@hanhtkvu.bsky.social @embl.org & we are looking for a #postdoc to study #regeneration x #autophagy across kingdoms of life. Pls spread the word & get in touch if you are interested www.health-life-sciences.de/opportunitie...
HEALTH + LIFE SCIENCE ALLIANCE | Interinstitutional Postdocs
www.health-life-sciences.de
February 16, 2026 at 2:06 PM
Reposted by Francesco Scavone
📣 UK Proteostasis Meeting 2026 – Registration Now Open!

I’m delighted to share that registration is now open for the UK Proteostasis Meeting 2026, hosted by The Francis Crick Institute on 20–21 July 2026
.

Please register here(lnkd.in/ervXMzWN) and through Eventbrite for payment (lnkd.in/eTxqjnQy)
February 13, 2026 at 1:25 PM
Reposted by Francesco Scavone
Nature research paper: CSN5i-3 is an orthosteric molecular glue inhibitor of COP9 signalosome

go.nature.com/4kwdCRy
CSN5i-3 is an orthosteric molecular glue inhibitor of COP9 signalosome - Nature
An orthosteric CSN inhibitor gains nanomolar potency via a molecular-glue mechanism, stabilizing a CSN5–N8–inhibitor complex that confers substrate-dependent inhibition despite weak free-enzyme affinity.
go.nature.com
February 11, 2026 at 8:13 PM
Reposted by Francesco Scavone
Yeast ubiquilin Dsk2 scaffolds proteasome-containing condensates under stress via multivalent interactions – @castanedalab.bsky.social et al show how dynamic interactions among its STI1 domain & transient helices in its disordered region promote its phase-separation
link.springer.com/article/10.1...
STI1 domain engages transient helices to mediate Dsk2 phase separation and proteasome condensation - The EMBO Journal
Ubiquitin-binding shuttle proteins are important components of stress-induced biomolecular condensates in cells. Yeast Dsk2 scaffolds proteasome-containing condensates via multivalent interactions wit...
link.springer.com
February 11, 2026 at 2:53 PM
Reposted by Francesco Scavone
And a new paper from the lab. A follow up to a previous study in which we elucidate the mechanism of the nuclear transport. Read the full story: www.nature.com/articles/s41...
February 11, 2026 at 5:12 PM
Reposted by Francesco Scavone
I’m excited to share my first-author paper, with co-first author @rongqinxiaoxiao.bsky.social, now out in @nature.com. We developed a live-cell single-particle tracking platform to see how TRiC & prefoldin engage proteins during co- and post-translational folding. 1/9 www.nature.com/articles/s41...
Single-molecule dynamics of the TRiC chaperonin system in vivo - Nature
Single-particle tracking experiments in intact cells reveal dynamic co- and post-translational interactions of the TRiC–PFD chaperonin complex with client proteins during in vivo protein folding.
www.nature.com
February 5, 2026 at 5:17 PM
Reposted by Francesco Scavone
🚀 Just published: New1 shields mRNAs from no-go decay — by preventing ribosome crashes at specific codons.
What’s new?
New1 (eEF3 homolog) stops ribosomes from stalling at C-terminal AAA/AGG/CGU codons. No New1 = collisions + Hel2 recruitment + Cue2-mediated no-go decay.
February 1, 2026 at 9:49 PM
Reposted by Francesco Scavone
Structure of the adaptor protein 4 (AP-4) complex revealed! AP-4 exists in a dynamic equilibrium between closed and open conformations in solution. ARF1 does not shift this equilibrium but is required—together with cargo—for membrane recruitment. rdcu.be/e1ozM
January 29, 2026 at 9:53 PM
Reposted by Francesco Scavone
After a long review process, I'm excited that our paper is finally in print: www.cell.com/cell/fulltex...

TL;DR: We use CRISPR screens in iPSC-derived neurons to find a new tau E3 ligase and a relationship between oxidative stress, the proteasome, and tau proteolytic fragments.

More below 👇
CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis
CRISPR screens in iPSC-derived neurons reveal that the E3 ubiquitin ligase CRL5SOCS4 ubiquitinates tau, that CUL5 expression is correlated with resilience in human Alzheimer’s disease, and that electr...
www.cell.com
January 28, 2026 at 5:12 PM
Reposted by Francesco Scavone
Our paper is (finally) out in Cell today!

CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis
www.cell.com/cell/fulltex...

Great collaborative effort - read more from first author @asamelson.bsky.social below:
January 28, 2026 at 5:24 PM
Reposted by Francesco Scavone
A very nice #review on #UFMylation from the giants of the field: The mechanistic basis and cellular functions of UFMylation www.nature.com/articles/s41...
Client Challenge
www.nature.com
January 11, 2026 at 2:09 PM
Reposted by Francesco Scavone
‼️Towards the end of #AusUb25, we caught up with Jonathan Pruneda to discuss ubiquitin signalling and its relationship with host-pathogen interactions. It was an amazing conference and such a great chance to meet people from across the ubiquitin field 🤩
December 17, 2025 at 4:20 AM
Reposted by Francesco Scavone
Out in @febsj.bsky.social, comment written with @tonyavril.bsky.social from @csignaling.bsky.social.
https://doi:10.1111/febs.70259
The SARS-CoV-2 spike protein interacts with HAX1 to modulate cellular stress responses through activation of the UPR
September 22, 2025 at 2:36 PM
Reposted by Francesco Scavone
From MBoC... Dr. Francesco Scavone (Stanford) shows ATG9A has an unexpected role in trafficking K63-polyubiquitin–modified membrane proteins. Blocking the signal traps cargos in vesicle clusters; once released, they rapidly reach lysosomes. 🔗 www.molbiolcell.org/doi/10.1091/... #ASCB #CellBiology
September 10, 2025 at 1:40 PM
Reposted by Francesco Scavone
Absolutely honoured to see our work featured on this month’s cover! 🎉🧬

Artwork by the incredibly talented @doroteaartscience.bsky.social 👇
🏖️Our August issue's out!
Cover: Flexibility of #autophagy initiation

👉🏼Review on #metabolism in #embryogenesis #devbio
👉🏼Review on #DNArepair
🔬 #ribosomes #neurodevelopment #mitophagy #ferroptosis #stemcells #epigenetics #leukemia #antitumor immunity & more!
www.nature.com/ncb/volumes/...
August 13, 2025 at 5:04 AM
Reposted by Francesco Scavone
Proud to share what we hope will be a reference study on human oocyte proteostasis. Young-donor eggs show globally reduced organelle activity vs. somatic cells, with an even steeper drop as they mature.
👇 for @zaffagg3 's detailed explanation

www.embopress.org/doi/full/10....
July 18, 2025 at 10:55 AM
Reposted by Francesco Scavone
#cryoEM confluence in Munich #womeninSTEM
July 17, 2025 at 9:44 PM
Reposted by Francesco Scavone
new preprint alert from the lab: bringing some order into the wide and wild diversity of archaeal histones. Who has acidic histones? who has multiple histones? what histone combinations do archaea employ and why? find all of this and more here
www.biorxiv.org/content/10.1...
June 27, 2025 at 4:01 PM