The EMBO Journal
banner
embojournal.org
The EMBO Journal
@embojournal.org
Non-for-profit publication of research in molecular, cell & organismal biology - as part of @embopress.org
Fast-fair-transparent / Open Access / Open Science
Pinned
In issue 3:
Cover: Jie Luo and colleagues
Review: roles of homologous recombination proteins in genome stability
Method: bacterial ubiquitin ligase engineered for target identification
and:
ATG8 ligases in membrane repair
Shaping somatic hypermutation patterns

link.springer.com/journal/4431...
New insight into dimethylsulfoniopropionate catabolism by marine bacteria, important for global organosulfur cycling: how DmdR regulator controls DMSP levels in ubiquitous Roseobacter
link.springer.com/article/10.1...
Regulation of DMSP organosulfur cycling in ubiquitous Roseobacter marine bacteria - The EMBO Journal
Dimethylsulfoniopropionate (DMSP) catabolism by marine Roseobacters is important for global biogeochemical cycling and the climate. Many Roseobacters contain competing DMSP demethylation and cleavage ...
link.springer.com
February 9, 2026 at 12:47 PM
Gene drive biasing inheritance of specific alleles in populations as a potential strategy for population suppression:
Xuejiao Xu, @jackson-champer.bsky.social et al test 9 female fertility genes as targets for CRISPR-based homing suppression drives in Drosophila
link.springer.com/article/10.1...
Assessing target genes for homing suppression gene drive - The EMBO Journal
Gene drives are engineered alleles that bias their own inheritance in offspring, enabling the spread of specific traits throughout a population. Targeting female fertility genes in a gene drive can be...
link.springer.com
February 9, 2026 at 12:46 PM
Reposted by The EMBO Journal
Cellular quiescence uncouples the proteome from the transcriptome in neural stem cells
Rita Sousa-Nunes and colleagues
link.springer.com/article/10.1...
Cellular quiescence uncouples the proteome from the transcriptome in neural stem cells - The EMBO Journal
Quiescence is a cellular state defined by reversible cell-cycle arrest and diminished biosynthesis, particularly of nucleic acids and proteins. These features protect stem cells from proliferation-ind...
link.springer.com
February 6, 2026 at 8:48 AM
Is cortical actin the sole driver of cellular membrane bleb expansion?
Junichi Ikenouchi and colleagues implicate also calcium-dependent CaMKII supercomplex reorganization, generating local osmotic pressure to cause water influx for bleb growth
link.springer.com/article/10.1...
CaMKII nucleates an osmotic protein supercomplex to induce cellular bleb expansion - The EMBO Journal
Blebs are membrane protrusions formed when localized regions of the plasma membrane detach from the actin cortex, enabling outward expansion driven by intracellular pressure. These structures play cri...
link.springer.com
February 5, 2026 at 9:38 AM
RBM15B recognizes H3K79me2 to guide selective m6A-modification of mRNA and enhance oncoprotein translation in MLL-r leukemia
Tian-Qi Chen, Yu-Meng Sun, Shun-Xin Zhu et al
link.springer.com/article/10.1...
RBM15B recognizes H3K79me2 to guide selective m6A-modification of mRNA and enhance oncoprotein translation in MLL-r leukemia - The EMBO Journal
The distribution of N6-methyladenosine (m6A) controls its substrate RNA fate, playing key roles in various biological processes. However, the mechanism underlying site-selective m6A deposition of RNAs...
link.springer.com
February 5, 2026 at 9:37 AM
What determines cell-cycle-dependent loading of human CENP-A?
Bypassing the MIS18α/β scaffold via artificial M18BP1 dimerization allows @andrea-musacchio.bsky.social and coworkers to identify determinants, including structure of the M18BP1 SANTA domain
link.springer.com/article/10.1...
M18BP1 valency and a distributed interaction footprint determine epigenetic centromere specification in humans - The EMBO Journal
The histone H3 variant CENP-A is considered an epigenetic landmark of centromeres. Its deposition reflects cell-cycle-regulated assembly of M18BP1, HJURP, and PLK1 on a divalent MIS18α/β scaffold. The...
link.springer.com
February 4, 2026 at 3:14 PM
Yuan Zheng and coworkers identify receptor competition as a mechanism underlying stabilization of the #Arabidopis master germination repressor RGL2, integrating abscisic acid and #gibberellin signaling during seed germination
link.springer.com/article/10.1...
Direct receptor competition gates RGL2 proteolysis for seed germination timing in Arabidopsis - The EMBO Journal
Seed germination is orchestrated by antagonistic gibberellin (GA) and abscisic acid (ABA) signals converging on the master germination repressor RGL2. Here, we unveil a receptor-competition paradigm w...
link.springer.com
February 4, 2026 at 3:13 PM
Reposted by The EMBO Journal
Cardiologist Dr. Helen Taussig founded the field of pediatric cardiology.

Co-developed the Blalock-Thomas-Taussig shunt in 1944. This groundbreaking surgical procedure treated "blue baby syndrome" saving thousands of infants who previously had no treatment option.

#WomensPhysiciansDay #WomenInSTEM
February 4, 2026 at 12:06 AM
“Favorable conditions bring yield, stress enhances quality”:
Biao Gong and colleagues explain how mild salt stress leads to tomato sweetening via root-derived abscisic acid signaling towards the ZHD8 transcription factor
link.springer.com/article/10.1...
Salt-stress-induced tomato sweetening involves an SlSnRK2.6-SlZHD8 sugar accumulation cascade triggered by root-derived abscisic acid - The EMBO Journal
Crop quality arises from the interplay of genetics and environment. While moderate salt stress is known to enhance fruit sweetness, the underlying molecular mechanisms remain unclear. Using tomato (So...
link.springer.com
February 3, 2026 at 10:38 AM
How do compartmentalization & loop extrusion organize eukaryotic genomes beyond classical model organisms?
Hi-C analysis of silkworm chromosomes by Drinnenberg, Muller, Mirny et al reveals new combination of these mechanisms, and a new, secluded “S” compartment
link.springer.com/article/10.1...
Unique territorial and compartmental organization of chromosomes in the holocentric silkworm - The EMBO Journal
Hallmarks of multicellular eukaryotic genome organization are chromosome territories, compartments, and loop-extrusion-mediated structures, including TADs. However, these have mainly been observed in ...
link.springer.com
February 3, 2026 at 10:37 AM
In issue 3:
Cover: Jie Luo and colleagues
Review: roles of homologous recombination proteins in genome stability
Method: bacterial ubiquitin ligase engineered for target identification
and:
ATG8 ligases in membrane repair
Shaping somatic hypermutation patterns

link.springer.com/journal/4431...
February 2, 2026 at 12:50 PM
Reposted by The EMBO Journal
Our @embojournal.org editor Daniel Klimmeck is looking forward to the #MitoCellFate conference in May. Submit poster abstracts and registration until February 9th => bit.ly/43AaInH @fusionconf.bsky.social
January 29, 2026 at 1:30 PM
Reposted by The EMBO Journal
✍️ The Pintard Lab ( @ccdlab.bsky.social ) published a new article
📖 @embojournal.org
📃 Molecular basis for the activation of Aurora A and Plk1 kinases during mitotic entry
🔗 link.springer.com/article/10.1...
January 30, 2026 at 9:22 AM
Reposted by The EMBO Journal
Excited to share a new piece of work in @embojournal.org

Parasitoid wasps hijack a bacterial gene that governs venoms against host. Coauthors include @rokaslab.bsky.social and others.

Read more from: link.springer.com/article/10.1...
A bacterial gene acquired by parasitoid wasps contributes to venom secretion against host defence - The EMBO Journal
Horizontal gene transfer (HGT) is an important source of gene innovation in prokaryotic and eukaryotic organisms. Several genes acquired by hosts of parasitoid wasps via HGT have been reported to prot...
link.springer.com
January 29, 2026 at 12:00 AM
Coming soon –with poster submission deadline Feb 2nd– #KSUbiquitin26
Our editor hvodermaier.bsky.social is looking forward to being there!
hubs.la/Q03TCqzV0
The Ubiquitin Family in Biology and Disease | Keystone Symposia
Join us at the Keystone Symposia on The Ubiquitin Family in Biology and Disease, February 2026, in Banff, with field leaders!
hubs.la
January 28, 2026 at 3:46 PM
AlphaFold modeling & new assays for mitotic kinase activation in E. coli (#MITOKINAC) reveal molecular basis of specific Aurora A & PLK1 activation through Bora during mitotic entry
Lionel Pintard @ccdlab.bsky.social et al
#RefereedPreprint@reviewcommons.org
link.springer.com/article/10.1...
Molecular basis for the activation of Aurora A and Plk1 kinases during mitotic entry - The EMBO Journal
The evolutionarily conserved, intrinsically disordered protein Bora is critical for initiating the activation of mitotic kinases. Once phosphorylated at Ser112 by Cyclin A-Cdk1 kinase, phospho-Bora ac...
link.springer.com
January 28, 2026 at 2:44 PM
Arianna Esposito Verza, @andrea-musacchio.bsky.social et al describe the long-sought-after mechanism of Bora dependency of PLK1 activation by Aurora A kinase during mitotic entry
Another #RefereedPreprint@reviewcommons.org
link.springer.com/article/10.1...
Molecular requirements for PLK1 activation by T-loop phosphorylation - The EMBO Journal
Activation of PLK1, a master mitotic kinase, requires phosphorylation of its activation segment on Thr210, within a basic consensus sequence for Aurora kinases. Aurora B-dependent phosphorylation of T...
link.springer.com
January 28, 2026 at 2:42 PM
TORC1-dependent translation remodels chromatin to repress the undifferentiated germ cell program and initiate the maternal program, thereby promoting oocyte fate in Drosophila
@n-kotb.bsky.social, Prashanth Rangan et al
link.springer.com/article/10.1...
TORC1-dependent translation drives chromatin remodeling during the germ-cell-to-maternal transition in Drosophila - The EMBO Journal
Proper oogenesis requires a programmed transition from an undifferentiated germ-cell gene expression program to a maternal gene-expression state. While this process depends on the heterochromatin-medi...
link.springer.com
January 27, 2026 at 11:17 AM
Reposted by The EMBO Journal
Biochemist/molecular biologist Joan Steitz was born #OTD in 1941.

She (& team) figured out how our cells read/use genetic instructions to make proteins. A key person who helped crack the code on RNA—the molecule that acts like a messenger between DNA & and the proteins our bodies need. #WomenInSTEM
January 26, 2026 at 7:08 PM
Reposted by The EMBO Journal
Jane Richardson was born #OTD in 1941

+ Developed the Richardson (ribbon) diagram to represent proteins' 3D structure (becoming a standard representation for protein structures)
+ MacArthur Fellow, 1985
+ Elected, Nat'l Academy of Sciences, 1991
+ President, Biophysical Society, 2012

#WomenInSTEM
January 26, 2026 at 12:06 AM
Reposted by The EMBO Journal
💡 Online now - the Spotlight "Cryptic phosphorylation sites provide new structural and functional insights into the human phosphoproteome" from Jesse Rinehart.

#ProteinPhosphorylation #Phosphoproteome #CrypticPhosphorylation

Read it here 👉 authors.elsevier.com/a/1mTsH3S6Gf...
January 23, 2026 at 11:55 AM
An mTORC1-independent function of the lysosomal LAMTOR-Rag complex regulates type I interferon production and antiviral defense in a nutrient-sensitive manner
Chun-Yan Lim and coworkers
link.springer.com/article/10.1...
The lysosomal LAMTOR-Rag complex functions as a checkpoint for antiviral interferon production - The EMBO Journal
Lysosomes are emerging as important signaling hubs for antiviral defense, yet how they enable type I interferon (IFN-β) production is unclear. Here, we identify an evolutionarily repurposed lysosomal pathway, centered on the LAMTOR-Rag GTPase complex, that governs IFN-β production through dual transcriptional and post-transcriptional regulation. Genetic ablation of LAMTOR or Rag GTPases in macrophages abolishes IFN-β responses despite intact pattern recognition receptor (PRR) signaling, uncovering a lysosome-specific checkpoint essential for antiviral immunity. Mechanistically, Rag GTPase activity controls IRF expression to prime IFN transcription, while upon PRR stimulation, the tumor suppressor FLCN recruits p38 MAPK to lysosomes, where Rag-dependent p38 phosphorylation stabilizes Ifnb1 mRNA. Nutrient availability dynamically modulates Rag nucleotide states and thereby its activation, linking IFN production to metabolic capacity. Notably, this checkpoint operates independently of mTORC1, illustrating how an ancient nutrient-sensing module has been co-opted for immune regulation. Disruption of the LAMTOR-Rag-FLCN-p38 axis impairs IFN induction in vitro and antiviral responses in vivo, underscoring its physiological significance. Our findings support the role of the lysosome as a central signaling hub integrating metabolic and immune cues, suggesting future directions for potential therapeutic strategies against viral infections.
link.springer.com
January 23, 2026 at 9:11 AM
Reposted by The EMBO Journal
1/5 It took us some time to connect the dots...now in @embojournal.org we use PANDORA-seq to start decoding the 'sperm RNA code of aging'
We find a conserved rsRNA length shift that reflects aging in both mouse & human sperm, and an 'aging cliff' at mid-life🧵
link.springer.com/article/10.1...
January 20, 2026 at 12:16 PM
What underlies the impact of sperm aging on fertility and offspring health?
small ncRNA profiling by Kenneth Aston, Tong Zhou, @qichen-lab.bsky.social and colleagues reveals a drastic shift in RNA complements able to affect recipient cell metabolism
link.springer.com/article/10.1...
Conserved shifts in sperm small non-coding RNA profiles during mouse and human aging - The EMBO Journal
Sperm aging impacts male fertility and offspring health, highlighting the need for reliable aging biomarkers to guide reproductive decisions. However, the molecular determinants of sperm fitness durin...
link.springer.com
January 20, 2026 at 3:19 PM