Abish Stephen
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astephen.bsky.social
Abish Stephen
@astephen.bsky.social
Microbiologist at Queen Mary University of London.

I work on anaerobes, biofilms, host-microbial models, bacterial volatile metabolites and oral microbiota-systemic axis.

Passionate about guitars, motorsport and cricket. #bikerlife

Views my own.
Reposted by Abish Stephen
Finally read the paper and it's worth the buzz.
mRNA vaccines saved 20 million lives in a global pandemic and the technology is opening up new avenues for the treatment of deadly cancers. This is really one of the most impactful scientific developments of our time.
www.nature.com/articles/s41...
SARS-CoV-2 mRNA vaccines sensitize tumours to immune checkpoint blockade - Nature
mRNA vaccines targeting SARS-CoV-2 also sensitize tumours to immune checkpoint inhibitors.
www.nature.com
October 25, 2025 at 1:42 PM
Reposted by Abish Stephen
#NewResearch

Despite being a virulence factor, candidalysin toxin is essential for Candida albicans to penetrate the oral epithelium to establish non-infectious colonisation.
@lableibundgut.bsky.social @frois-martins.bsky.social
@leibniz-hki.de

#MicroSky 🍄

www.nature.com/articles/s41...
Dynamic expression of candidalysin facilitates oral colonization of Candida albicans in mice - Nature Microbiology
Despite being a virulence factor, candidalysin toxin is essential for Candida albicans to penetrate the oral epithelium to establish and maintain non-infectious colonization
www.nature.com
October 1, 2025 at 5:40 PM
Reposted by Abish Stephen
Interesting paper on bacteriophage genomics and bioinformatics

'Phage quest: a beginner’s guide to explore viral diversity in the prokaryotic world' by @sebwielgoss.bsky.social and colleagues

academic.oup.com/bib/article/...
Phage quest: a beginner’s guide to explore viral diversity in the prokaryotic world
Abstract. The increasing interest in finding new viruses within (meta)genomic datasets has fueled the development of computational tools for virus detectio
academic.oup.com
October 21, 2025 at 1:45 PM
Reposted by Abish Stephen
🦠 In a totally not petrifying story, a team in USA 'resurrected' and grew some 40k year old bacteria encased in Alaskan permafrost. Hey, its gonna melt soon anyway, best find out what will happen doi.org/10.1029/2025...
October 10, 2025 at 9:54 AM
Reposted by Abish Stephen
Permafrost, harbors more organic carbon than is currently in the atmosphere as CO2. As the Arctic warms and permafrost thaws, ancient microbes can reactivate, allowing the degradation of organic carbon that has accumulated in permafrost over millenia, resulting in the release of greenhouse gases
Microbial Resuscitation and Growth Rates in Deep Permafrost: Lipid Stable Isotope Probing Results From the Permafrost Research Tunnel in Fox, Alaska
Microbial growth is extremely slow within the first 30 days of thaw. Temperature may drive which taxa are active, but not growth rates Subsurface microbes preferentially produce glycolipids over ...
agupubs.onlinelibrary.wiley.com
October 18, 2025 at 5:37 AM
Reposted by Abish Stephen
I think people adjacent to science (but who now find themselves deciding the fate of US science somehow) undervalue humility, valuing braggadocios hubris instead.
Yes it’s true that some scientific discoveries are complete paradigm changers, and we celebrate these. 1/
October 16, 2025 at 4:11 PM
Reposted by Abish Stephen
Hello everyone, take a look at my cool bugs from the Microbial Dark Matter phylum Saccharibacteria! These ultrasmall bacteria (in green) track down Actinobacteria hosts (not in green) and grow on the host cell envelope.
For the first time, scientists have performed targeted mutations on an episymbiosis-determining pathway. In a new study on Saccharibacteria, AFI researchers used advanced techniques to observe pili that drive motility and host attachment.

@batbilegbor.bsky.social

forsyth.org/saccharibact...
October 15, 2025 at 5:01 PM
Reposted by Abish Stephen
C̳H̳E̳C̳K̳ ̳I̳T̳ ̳O̳U̳T̳

Spectacular atomic force microscopy time course studies from Carolina Borrelli et al. in Nature Microbiology show how polymyxin drugs (like colistin) cause blebbing and shedding of the Gram-negative bacterial outer membrane

It looks almost like the bacilli 🦠 caught smallpox then died
Polymyxin B lethality requires energy-dependent outer membrane disruption - Nature Microbiology
The antibiotic polymyxin B requires bacterial metabolic activity to cause sufficient damage to the outer membrane to access the inner membrane, which it permeabilizes via an energy-independent mechanism to kill the cell.
www.nature.com
October 7, 2025 at 12:55 PM
Reposted by Abish Stephen
Comprehensive metabolomics combined with machine learning for the identification of SARS-CoV-2 and other viruses directly from upper respiratory samples #JClinMicrobiol #MassSpec journals.asm.org/doi/10.1128/...
Comprehensive metabolomics combined with machine learning for the identification of SARS-CoV-2 and other viruses directly from upper respiratory samples | Journal of Clinical Microbiology
Molecular testing has greatly improved how viruses are diagnosed; however, gaps remain, including limited sensitivity directly from specimens and inability to differentiate active from resolved infection. In this study, we investigated the use of a distinct diagnostic approach, mass spectrometry for detection of metabolites (small molecules) combined with machine learning analysis, for the diagnosis of SARS-CoV-2 and other respiratory viruses. We demonstrated strong performance of this approach directly from upper respiratory swab samples to differentiate SARS-CoV-2-infected versus uninfected individuals. Extension of this approach to influenza and RSV maintained a high level of performance. This research suggests that mass spectrometry-based infectious disease diagnostic testing has clinical potential and that these metabolomic features may reveal novel host-pathogen interactions and therapeutic targets. Applying a similar approach to prospective, multisite cohorts of patients with other infectious diseases carries potential to extend our understanding of the metabolic pathways involved in the host response to infection.
journals.asm.org
October 9, 2025 at 6:48 PM
Reposted by Abish Stephen
We're now recruiting early career group leaders at the Crick to lead ambitious research programmes and explore bold scientific questions.

Hear our Director, Edith Heard, explain why the Crick is a unique place for curiosity-driven research.

Apply now ➡️ www.crick.ac.uk/careers-stud...
October 9, 2025 at 2:06 PM
Reposted by Abish Stephen
Lauric acid: a promising antimicrobial for the selective inhibition of Staphylococcus epidermidis strains associated with infection https://www.biorxiv.org/content/10.1101/2025.10.06.680683v1
October 7, 2025 at 4:18 PM
Very cool preprint, on a 'defined' synthetic bacterial community consisting of several strict anaerobes in microaerophilic conditions. #anaerobes 🧪
The Impact of Serum on a Complex Synthetic Community Model of the Subgingival Microbiome https://www.biorxiv.org/content/10.1101/2025.10.07.681017v1
October 8, 2025 at 8:11 PM
Reposted by Abish Stephen
Like...this is the biggest corruption scandal the NIH has experienced in its entire history and its not even close. Half of a BILLION dollars to a single project as a result of political spoils. That's the equivalent of several hundred R01s.
October 5, 2025 at 1:50 AM
Reposted by Abish Stephen
Job alert ‼️ UChicago Micro is hiring! Open to tenured/tenure track faculty at all levels in any area of microbiology. Come join our amazing and growing department. apply.interfolio.com/174404
October 4, 2025 at 6:44 PM
Reposted by Abish Stephen
So excited our antibiotic potentiation story is out 🤩 Led by the extraordinary @manonlang.bsky.social with @fox-science.bsky.social & @amazeld.bsky.social +amazing collaborators @immunobladder.bsky.social @imaneelmeouche.bsky.social 🦠 We believe it can make a difference in #AMR infections!
Uridine as a potentiator of aminoglycosides through activation of carbohydrate transporters
Uridine boosts aminoglycoside treatment efficiency against antibiotic-susceptible as well as antibiotic-resistant E. coli strains.
www.science.org
September 6, 2025 at 9:35 AM
Reposted by Abish Stephen
A suspected Ebola outbreak is occurring in DRC. This is bad at any time! But it’s particularly worrisome now when US capacity to detect and respond to deadly biothreats has been purposefully dismantled.

www.theatlantic.com/ideas/archiv...
September 3, 2025 at 10:54 PM
Reposted by Abish Stephen
🧵How to write and manage your first research budgets

The point of funding is to convert it into quality research. A well-spent research budget should fund the idea it was raised on, plus revision experiments, plus preliminary data for the next grant. So you need to spend, while avoiding waste.
September 3, 2025 at 4:03 PM
Reposted by Abish Stephen
Baby dies of whooping cough as childhood vaccinations continue to fall #TomorrowsPapersToday
August 30, 2025 at 9:20 PM
Reposted by Abish Stephen
Strep ❤️

Viridans streptococci DNA found in ~42% of coronary plaques, forming biofilms ignored by macrophages

Once fragments escape, TLR2 senses them—potentially triggering an inflammatory response that disrupts plaque stability and increases heart attack risk

www.ahajournals.org/doi/10.1161/...
August 30, 2025 at 9:36 PM
Reposted by Abish Stephen
Veillonella promotes C. diff infection in Crohn’s disease

Oral commensal Veillonella promotes C. difficile germination by disrupting bile acid recycling. Veillonella LPS activates signaling to suppress bile acid transporter, preventing bile acid reabsorption
www.cell.com/cell-host-mi...
Veillonella intestinal colonization promotes C. difficile infection in Crohn’s disease
Yang et al. identify the oral commensal Veillonella as a key driver of Clostridioides difficile infection in Crohn’s disease. Veillonella promotes pathogen germination by disrupting bile acid recyclin...
www.cell.com
August 25, 2025 at 7:39 PM
Reposted by Abish Stephen
Couldn’t agree more guys, some of the conclusions drawn in papers off the back of a database match or a blast search is deeply worrying, without full understanding of what genes are required for resistance (like the glycopeptide operon example from Willem!
August 22, 2025 at 8:19 PM
Reposted by Abish Stephen
VERY INTERESTING

AfuPmV-1M, a dsRNA mycovirus in 𝘼𝙨𝙥𝙚𝙧𝙜𝙞𝙡𝙡𝙪𝙨 𝙛𝙪𝙢𝙞𝙜𝙖𝙩𝙖𝙨, boosts fungal stress tolerance, melanin, virulence

In vivo, antiviral (ribavirin) treatment cut viral load and improved mouse survival—mycoviruses are hidden “backseat drivers” of fungal disease

www.nature.com/articles/s41...
August 22, 2025 at 5:22 AM