Vladimir Volkov 🇺🇦
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vladimirvolkov.bsky.social
Vladimir Volkov 🇺🇦
@vladimirvolkov.bsky.social
Reader in Biochemistry @QMUL. Interested in #biophysics #cryoET #multivalency. I post preprints.
he/him
volkovlab.com
Pinned
New preprint from the lab - the first paper made (almost) entirely here @qmul.bsky.social

We report how human outer kinetochore complexes Ndc80 and Ska form cooperative oligomers, that together stabilise microtubule ends against shortening.
www.biorxiv.org/content/10.1...

Key results below: (1/7)
Microtubule end stabilisation by cooperative oligomers of Ska and Ndc80 complexes
During mitosis, properly aligned chromosomes stabilise microtubule ends with the help of kinetochores to ensure timely segregation of chromosomes. Microtubule-binding components of the human outer kinetochore, such as Ndc80 and Ska complexes, are present in multiple copies and together bind several microtubule ends, creating a highly multivalent binding interface. Whereas Ndc80:Ndc80 and Ndc80:microtubule binding is crucial for interface stability, Ndc80 alone in absence of Ska is unable to support stable kinetochore-attachments. Using cryoET, we demonstrate that oligomeric Ndc80:Ska assemblies stabilise microtubule ends against shortening by strengthening lateral contacts between tubulin protofilaments at microtubule plus-ends. We further identify a point mutation within the SKA1 microtubule-binding domain that does not affect microtubule-binding of individual Ska molecules, but does abolish Ska:Ska interactions. Finally, we report that oligomerisation of Ska, in a cooperative fashion together with the Ndc80, is necessary to maintain stable microtubule attachments both in vivo and in vitro. ### Competing Interest Statement The authors have declared no competing interest. BBSRC, BB/X014975/1, BB/W019698/1 Wellcome Trust, https://ror.org/029chgv08, 308895/Z/23/Z
www.biorxiv.org
Reposted by Vladimir Volkov 🇺🇦
Interested in pursuing a PhD by working on a long-neglected marine organism and making a lot of discoveries? Darwin Trust offers a PhD studentship for international students (anyone non-UK) www.findaphd.com/phds/project...
November 11, 2025 at 9:26 AM
Reposted by Vladimir Volkov 🇺🇦
I am seeing a lot of posts about Rosalind Franklin that themselves ignore her publication record on DNA!

In fact Franklin and Gosling's paper, including the famous Photograph #51, was published, along with Wilkins's paper, back-to-back with the Watson and Crick paper in Nature in 1953.
November 9, 2025 at 6:43 PM
Reposted by Vladimir Volkov 🇺🇦
November 5, 2025 at 9:18 AM
Reposted by Vladimir Volkov 🇺🇦
‘Epigenetic serum’ makes you wonder !
November 2, 2025 at 3:53 PM
Reposted by Vladimir Volkov 🇺🇦
Our colleagues Vinith Kishore and Valentin Debarnot from the @ivandokmanic.bsky.social lab have come up with an amazing deep learning tool for denoising and filling the missing wedge in #cryoET data. I'm pleased to introduce Icecream🍧
Icecream: High-Fidelity Equivariant Cryo-Electron Tomography
Cryo-electron tomography (cryo-ET) visualizes 3D cellular architecture in near-native states. Recent deep-learning methods (CryoCARE, IsoNet, DeepDeWedge, CryoLithe) improve denoising and artifact cor...
www.biorxiv.org
October 23, 2025 at 11:13 AM
Reposted by Vladimir Volkov 🇺🇦
Two back-to-back stories on mitosis led by my incredible postdoc @krunovuk.bsky.social at @institutrb.bsky.social, in which we challenge the gliding model of CENP-E-driven chromosome congression! Today in @natcomms.nature.com
doi.org/10.1038/s414...
doi.org/10.1038/s414...
October 21, 2025 at 11:14 AM
Reposted by Vladimir Volkov 🇺🇦
Aging as a PI: I read less papers and have less people to talk to. I'm starting to think I'll get into LLMs at some point 🥲
October 20, 2025 at 7:36 PM
Reposted by Vladimir Volkov 🇺🇦
Dick is one of the most thoughtful folks in cell biology--this is a must read for anyone interested in microtubules!
Perspective from Richard McIntosh describing the history of research on #microtubule polymerization in terms of the ideas, technologies, and observations that have emerged as countless researchers have studied the dynamics of these essential cytoskeletal polymers. rupress.org/jcb/article/...
October 15, 2025 at 6:23 PM
Reposted by Vladimir Volkov 🇺🇦
Perspective from Richard McIntosh describing the history of research on #microtubule polymerization in terms of the ideas, technologies, and observations that have emerged as countless researchers have studied the dynamics of these essential cytoskeletal polymers. rupress.org/jcb/article/...
October 15, 2025 at 4:02 PM
Reposted by Vladimir Volkov 🇺🇦
🤖 If you use LinkedIn, please be aware that they automatically use your profile to train their GenAI. To turn off, go to Settings > Data Privacy > Data for Gen AI improvements.
October 11, 2025 at 11:04 PM
Reposted by Vladimir Volkov 🇺🇦
So when I hear of students being encouraged to use GPT in college I don’t hear innovation. I hear cognitive atrophy, the inability to think critically for oneself, and total dependence on vulnerable centralized repositories of data for knowledge without ever understanding how knowledge is generated.
October 10, 2025 at 4:07 AM
Reposted by Vladimir Volkov 🇺🇦
UK Universities cut 12,000 jobs, more on the way.

40% of Unis in financial crisis.

Major exporter destroyed by successive govts

Obstacles for foreign students.
Low fees in England, lack of govt funding.
£267bn student debt.
Home student numbers down.

How will the UK compete with other nations?
Thousands more university jobs cut as financial crisis deepens
University workers will vote on national strike action this month over a 1.4% pay offer made in the summer.
www.bbc.co.uk
October 10, 2025 at 6:27 AM
Reposted by Vladimir Volkov 🇺🇦
Thrilled to share that the lab has been awarded a @wellcometrust.bsky.social Discovery Award to keep exploring the evolution of 6-methyladenine #6mA in Eukaryotes. We'll open postdoc (3️⃣) and tech (1️⃣) positions to start in 2026, please share with candidates or reach out if you’d like to join us.
October 8, 2025 at 12:17 PM
Reposted by Vladimir Volkov 🇺🇦
The year 1984 is unfairly maligned. Have we considered changing the title of George Orwell’s classic to 2025?
September 25, 2025 at 11:52 PM
Reposted by Vladimir Volkov 🇺🇦
Interesting article on public misconceptions about HE, including the value to the economy.

And yet our govt seem happy to sit back and let it all go to shit. 🤷🏻‍♂️ www.theguardian.com/education/20...
September 21, 2025 at 8:22 AM
Reposted by Vladimir Volkov 🇺🇦
Immigrants, particularly on H1Bs, are the lifeblood of American innovation. If you wanted to hurt US competitiveness in the next century, I can think of few more effective ways than a move like this

Even when found illegal, the mere intent will have irreparably harmed our future
September 20, 2025 at 4:24 PM
Reposted by Vladimir Volkov 🇺🇦
Can ChatGPT help science writers?
www.science.org
September 19, 2025 at 2:50 PM
Reposted by Vladimir Volkov 🇺🇦
Paper alert🚨
Label your protein of interest and localize it in cryoET 👁️❄️

Genetically encoded FerriTag as a specific label for cryo-electron tomography: Structure www.cell.com/structure/fu...
Genetically encoded FerriTag as a specific label for cryo-electron tomography
Wang et al. present an optimized labeling strategy for cryo-electron tomography based on genetically encoded FerriTag. This system uses rapamycin to recruit iron-loaded ferritin to target proteins, en...
www.cell.com
September 11, 2025 at 9:36 AM
These passages about what the UK gov is preparing for the HE sector are quite terrifying:
September 5, 2025 at 10:08 AM
Reposted by Vladimir Volkov 🇺🇦
This reminds me how much I hate it when I have to watch a video tutorial. The reason books and libraries have been successful is that you can parse the information they contain many times faster than with a linear media or someone talking
npr.org NPR @npr.org · Aug 29
Technologist Victor Riparbelli sees a future where students interact with AI avatars rather than read and write. We ask teachers and kids what they think and how they're using AI right now.
Will AI avatars eventually teach our kids?
Technologist Victor Riparbelli sees a future where students interact with AI avatars rather than read and write. We ask teachers and kids what they think and how they're using AI right now.
n.pr
September 1, 2025 at 3:40 PM
Reposted by Vladimir Volkov 🇺🇦
I can not help but notice that "peace deal" in English sounds as "пиздил" in Russian. Both parties are making the same sound, but with a very different meaning
February 17, 2025 at 10:24 PM
Reposted by Vladimir Volkov 🇺🇦
📢📢Hiring 2 Research Assistants & 2 Postdocs at Emory University in Atlanta to study cytoskeletal biophysics/biochemistry. Please RT.

RAs: great for recent bachelor's/master's in Physics/Bio/Chem/Biochem. Email CV and interests to shekhar@emory.edu.

More info: www.shekharlab.org
August 29, 2025 at 3:50 AM
Reposted by Vladimir Volkov 🇺🇦
Better ML for cryo-ET starts with better benchmarks.

We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge.

The result: community models beat expert tools.

Read more in the @natmethods.nature.com article that just came out:
🔗 doi.org/10.1038/s415...
A realistic phantom dataset for benchmarking cryo-ET data annotation - Nature Methods
A standardized, realistic phantom dataset consisting of ground-truth annotations for six diverse molecular species is provided as a community resource for cryo-electron-tomography algorithm benchmarki...
doi.org
August 26, 2025 at 2:22 PM
Reposted by Vladimir Volkov 🇺🇦
Perceptions have real effects

www.kcl.ac.uk/policy-insti...
August 27, 2025 at 10:17 AM
Reposted by Vladimir Volkov 🇺🇦
Very honored to receive the Royal Society Research Culture Award - this represents the work of a great team who've worked non-stop since we launched bioRxiv in 2013 royalsociety.org/news/2025/08... www.cshl.edu/inglis-and-s...
Invisibility cloak pioneer Sir John Pendry awarded Royal Society’s top prize | Royal Society
The Royal Society announces the medals and awards recipients 2025
royalsociety.org
August 27, 2025 at 1:37 PM