Amir Rahmani
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astormic.bsky.social
Amir Rahmani
@astormic.bsky.social
Super-resolution microscopy enthusiast
Postdoc at the University of Cambridge
Visiting Researcher at the British Antarctic Survey
College Research Associate at Wolfson College
https://laser.ceb.cam.ac.uk/
Pinned
Thrilled to see interest in this preprint! This work was a major part of my PhD, my hope is that single-molecule flow cytometry can be useful to the community in exploring new applications and discoveries.

doi.org/10.1101/2025...
Reposted by Amir Rahmani
Another huge advantage of miOPM is that it's gentle! A light-sheet microscope that's compatible with standard slides and multi-well plates!

-> Here we show 3D mitochondrial membrane potential in mammalian cells (GFP/RFP for mito, Cy5 for DNA). The cells move around freely!

doi.org/10.1101/2025...
November 9, 2025 at 8:03 PM
Reposted by Amir Rahmani
PhD studentship available on using our single-molecule flow cytometry technology to detect rare proteins. Apply if you're interested in applying single-molecule techniques to improve diagnostics and to discover new routes for anti-cancer immunotherapy. www.findaphd.com/phds/project...
Unraveling the biology and signalling potential of sparse cell antigens through single-molecule flow cytometry at University of Leeds on FindAPhD.com
PhD Project - Unraveling the biology and signalling potential of sparse cell antigens through single-molecule flow cytometry at University of Leeds, listed on FindAPhD.com
www.findaphd.com
November 6, 2025 at 5:07 PM
Always there for our group meetings!
November 5, 2025 at 8:16 PM
Reposted by Amir Rahmani
Single-molecule friends!

The prelim. program of next year's sm- #Gordon conference in Switzerland is online: www.grc.org/single-molec...
It'll be 3x fantastic: science, people, place in the alps ⛰️. Kevin & I hope to see you all next June:

Have a look, tell your friends, and register!
2026 Single Molecule Approaches to Biology Conference GRC
The 2026 Gordon Research Conference on Single Molecule Approaches to Biology will be held in Les Diablerets, Vaud (fr) Switzerland. Apply today to reserve your spot.
www.grc.org
November 2, 2025 at 7:23 PM
Reposted by Amir Rahmani
@tanner-fadero.bsky.social told me there was a discussion about the unofficial name for #snouty V3. We have had Mr. Snouty and King Snouty, and there were people suggesting Emperor Snouty. I think it is time for a Lady or EMPRESS snouty. I have created Art to support this.
September 18, 2025 at 3:02 AM
Thrilled to see interest in this preprint! This work was a major part of my PhD, my hope is that single-molecule flow cytometry can be useful to the community in exploring new applications and discoveries.

doi.org/10.1101/2025...
August 28, 2025 at 8:23 PM
👀 What if your flow cytometer could see the invisible?

Our new preprint introduces single-molecule flow cytometry (smFC), pushing detection sensitivity 10–80× beyond conventional flow cytometry.
www.biorxiv.org/content/10.1...
Single-molecule flow cytometry
Flow cytometry (FC) is a powerful tool for high-throughput characterisation of cell populations, yet its ensemble fluorescence detection and the autofluorescence of cells impose a sensitivity limit of...
www.biorxiv.org
August 27, 2025 at 6:39 AM
Reposted by Amir Rahmani
How many photons are in a GFP? — more than last year, and more than you thought. Here's a simple, cheap, and practical method to break a fundamental limit in fluorescence microscopy. But it only works in light sheet!
August 19, 2025 at 7:31 PM
Reposted by Amir Rahmani
I was searching for a Python utility for Fourier Ring/Shell Correlation. All I got in a blue sky search were 4 small posts from @christletx.bsky.social ... all I got from chatgpt was installation instructions for non-existent libraries and github repos... anyone know a good tool for this?
August 16, 2025 at 3:08 PM
Reposted by Amir Rahmani
Hello! Very excited to share our latest preprint, which is great news for us but terrible news for any diehard fans of PSNR and SSIM as image quality metrics in microscopy... (1/5)
www.biorxiv.org/content/10.1...
Image quality metrics fail to accurately represent biological information in fluorescence microscopy
Image processing methods offer the potential to improve the quality of fluorescence microscopy data, allowing for image acquisition at lower, less phototoxic illumination doses. The training and evalu...
www.biorxiv.org
August 7, 2025 at 1:00 PM
Feedback mechanisms involving p21-activated kinase enzymes underlie excitability of a cell's actin scaffold.

journals.biologists.com/jcs/article/...
A role for class I p21-activated kinases in the regulation of the excitability of the actin cytoskeleton
Highlighted Article: Inhibition of class I p21-activated kinase activity leads to the constitutitive production of PI(3,4,5)P3 at the plasma membrane and a dysregulation of the actin cytoskeleton.
journals.biologists.com
July 11, 2025 at 7:09 AM
Reposted by Amir Rahmani
The review on live-cell SMT that I contribute to the jmolbiol.bsky.social special issue ‚Imaging of the central dogma‘ is now online as pre-proof: www.sciencedirect.com/science/arti...
June 27, 2025 at 3:41 PM
Reposted by Amir Rahmani
Production has started for a new #Snoutscope objective, AMS-AGY v3. It has significantly larger FOV and some other tweaks from v1 and v2. Currently accepting pre-orders. The price will need to increase modestly after deliveries start late October.
July 9, 2025 at 8:00 PM
Reposted by Amir Rahmani
📽️ G&D Tapes 📽️

G&D author, Noah Helton tells us about their new study in #genesdev, revealing an intriguing link between stress granule formation and the integrated stress response. #OpenAccess @smslmoon.bsky.social

Read the full story here:
➡️ tinyurl.com/gd352899
July 8, 2025 at 6:41 PM
Excellent choice of photo to begin the talk!

Speaker: Dr Meng Lu from Peking University
July 7, 2025 at 3:10 PM
Reposted by Amir Rahmani
Check out our latest preprint, which is the latest production from our long-lasting collaboration with Andrey Klymchenko

> functionnalizing NPs with humanized antibodies (i.e. Trastuzumab).

Work performed by @vmittelheisser.bsky.social & O.Lefebvre in my lab.

www.biorxiv.org/content/10.1...
July 7, 2025 at 7:34 AM
They showed how the conformational dynamics of single molecules can be retrieved from FRET correlation functions in diffusion-based smFRET experiments.

www.nature.com/articles/s41...
Model-free photon analysis of diffusion-based single-molecule FRET experiments - Nature Communications
The authors show how to compute the autocorrelation function of FRET efficiencies and obtain dynamic information from as little as a few thousand molecules.
www.nature.com
July 3, 2025 at 1:22 PM
Slanted light-sheet array microscopy for large volume imaging at rates exceeding 100 Hz

arxiv.org/pdf/2506.13664
arxiv.org
June 21, 2025 at 7:04 AM
Transforming iterative MINFLUX from a precision localisation tool into a real-time SPT method.
Parameter Optimization for Iterative MINFLUX Microscopy enabled Single Particle Tracking https://www.biorxiv.org/content/10.1101/2025.06.10.658837v1
June 15, 2025 at 9:35 PM
Could we create a platform for tracking analysis that all these new, cool tools could be on?

www.biorxiv.org/content/10.1...
DeepTRACE: Flexible Machine Learning for Analysis and Discovery in Single Molecule Tracks
DeepTRACE is a machine learning tool for analysing long, complex single-molecule tracks in living cells; learning from sequences of molecular events using spatial, temporal, and photometric context. I...
www.biorxiv.org
May 19, 2025 at 9:35 PM
Claim to deliver 10 nm in xy an 25 nm in z loc precision (no FRC provided?). Photon-efficient and 100x faster (!), compared to what?

www.biorxiv.org/content/10.1...
Deep Volumetric Localization Super-Resolution Microscopy
Super-resolution microscopy, particularly localization-based methods, necessitates careful balancing of optical complexity, computational demands, and user accessibility. Conventional strategies typic...
www.biorxiv.org
May 18, 2025 at 4:46 PM