Miguel Gómez-Raya
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miguelgrv.bsky.social
Miguel Gómez-Raya
@miguelgrv.bsky.social
Postdoc in the Cell Biology and Virology of Archaea Unit @pasteur.fr

Archaea is the coolest domain of life! 🔬🦠

PPU PhD @pasteur.fr, Mart Krupovic
MSc Microbiology @helsinki.fi, Mikael Skurnik
BSc Biomedicine @UB.edu
Pinned
Elated to have our pre-print now published in @natcomms.nature.com #ArchaeaSky #Microbiology #MEvoSky
rdcu.be/euila
Our main results stay the same: S. islandicus follows a cell cycle akin to that of some eukaryotes, like the budding yeast, with cellular processes cycling similarly.
old🧵cited below👇
Reposted by Miguel Gómez-Raya
DAY 243
SPECIES 243 - Ca. Lokiarchaeum ossiferum
STAGE: Archaea
MEDIUM: Arches Paper. Chromatek watercolor. Sakura pen

NOTES: Yesterday was 10% shading and 90% painting, Todays was 90% shading with a 10min paint job. Looked better before painting, but I'll spend some more time on later archaea.
February 3, 2026 at 7:24 AM
Reposted by Miguel Gómez-Raya
DAY 242
SPECIES 242 - Prometheoarchaeum syntrophicum
STAGE: Archaea
MEDIUM: Arches Paper. Chromatek watercolor. Sakura pen

NOTES: I was unaware of asgard archaea last year, now they are one of my favorite creatures. Excited to learn more about them.

#sciart #watercolor #archaea #art #paint
February 2, 2026 at 7:28 AM
Reposted by Miguel Gómez-Raya
Bacteria chromosomes contain Genomic Islands that provide virulence, antibiotic resistance, MGE-defence,... They transfer between cells, but the mechanism of most remains elusive.

Here we explore the conjugative capacity of these mysterious Genomic Islands.

www.biorxiv.org/content/10.6...
www.biorxiv.org
January 14, 2026 at 10:14 AM
Reposted by Miguel Gómez-Raya
Un poste de Maître de Conférence est ouvert pour rejoindre notre unité à Lyon !

Possibilité de rejoindre mon équipe pour travailler sur:
- caractérisation des mécanismes de défense anti-phage
- transfert horizontal et interactions entre éléments génétiques mobiles

N'hésitez pas à me contacter
📢 Recrutement d’un(e) Maître(sses) de conférence en Biochimie générale, spécialité bactériologie moléculaire à MMSB

🔬Recherche
*Immunité anti-phages
*Réponse au stress, modulation de la croissance bactérienne
✉️ christophe.grangeasse@cnrs.fr

📚Enseignement : Université Lyon I
✉️ patrice.gouet@ibcp.fr
January 29, 2026 at 8:39 PM
Reposted by Miguel Gómez-Raya
We found a new mode by which bacteria deplete NAD+ to protect from phages. And then we found how phages overcome this defense

Discovered by talented biochemist Dr Ilya Osterman, read the preprint: tinyurl.com/Narp-ap

A thread 🧵
Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases
Many bacterial defense systems restrict phage infection by breaking the molecule NAD+ to its constituents, adenosine diphosphate ribose (ADPR) and nicotinamide (Nam). To counter NAD+ depletion-mediated defense, phages evolved NAD+ reconstitution pathway 1 (NARP1), which uses ADPR and Nam to rebuild NAD+. Here we report a bacterial defense system called aRES, involving RES-domain proteins that degrade NAD+ into Nam and ADPR-1″-phosphate (ADPR-1P). This molecule cannot serve as a substrate for NARP1, so that NAD+ depletion by aRES defends against phages even if they encode NARP1. We further discover that some phages evolved an extended NARP1 pathway capable of overcoming aRES defense. In these phages, the NARP1 operon also includes a specialized phosphatase, which dephosphorylates ADPR-1P to form ADPR, a substrate from which NARP1 then reconstitutes NAD+. Other phages encode inhibitors that directly bind aRES proteins and physically block their active sites. Our study describes new layers in the NAD+-centric arms race between bacteria and phages and highlights the centrality of the NAD+ pool in cellular battles between viruses and their hosts. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, ERC-AdG GA 101018520 Israel Science Foundation, MAPATS grant 2720/22 Deutsche Forschungsgemeinschaft, SPP 2330, grant 464312965 Minerva Foundation with funding from the Federal German Ministry for Education and Research research grant from Magnus Konow in honor of his mother Olga Konow Rappaport Ministry of Aliyah and Immigrant Absorption, https://ror.org/05aycsg86 Clore Scholars Program
tinyurl.com
January 29, 2026 at 3:34 PM
Reposted by Miguel Gómez-Raya
The origin of eukaryotic cells continues to be one of the greatest mysteries in biology.

EMBL Grenoble is excited to welcome Florian Wollweber, who will use cutting-edge imaging techniques to study Asgard archaea — microbes closely related to our earliest ancestors. 🦠🔬

www.embl.org/news/people-...
January 28, 2026 at 10:56 AM
Reposted by Miguel Gómez-Raya
Using micropatterning & thousands of hours on the microscope
@manuelthery.bsky.social and the #CytoMorphoLab reimagined the Musée D’Orsay. Accompanied by an orchestra and poet, their images transported us into the cellular universe. I remembered why I am a cell biologist. All of this is in us. Wow!
January 25, 2026 at 11:03 AM
Reposted by Miguel Gómez-Raya
A reminder to sign up for the 2026 EMBO archaeal meeting im Cambridge: meetings.embo.org/event/26-arc.... Registration is open. We are looking forward to hosting you!
Molecular Biology of Archaea: Life Through the Prism of Archaea
In 1977, Woese and colleagues revealed Archaea as a distinct domain of life. Building on this insight, the discovery of Asgard archaea has strengthened the view that many hallmarks of eukaryotic cell…
meetings.embo.org
January 23, 2026 at 8:15 AM
Reposted by Miguel Gómez-Raya
DAY 230
SPECIES 230 - Archaeoglobus veneficus
STAGE: Archaea
MEDIUM: Arches Paper. Chromatek watercolor, Sakura pen, Tombow colored pencil

A. veneficus is a hyperthermophilic archaeon, found in deep-sea hydrothermal vents. It's often linked to iron corrosion in oil systems

#sciart #painting #art
January 21, 2026 at 6:55 AM
Reposted by Miguel Gómez-Raya
#NatMicroPicks

Asgard archaea and the origin of eukaryotes! 🦠

Eukaryotic cellular complexity evolved largely within the Asgard lineage before mitochondrial endosymbiosis and later bacterial gene acquisitions

#MicroSky

www.nature.com/articles/s41...
Dominant contribution of Asgard archaea to eukaryogenesis - Nature
A survey of the reconstructed gene set of the last eukaryotic common ancestor shows a consistent link between Asgard archaea and the origin of numerous, functionally diverse eukaryotic genes, dem...
www.nature.com
January 16, 2026 at 2:56 PM
Reposted by Miguel Gómez-Raya
If you are interested in ssDNA viruses of bacteria, archaea or eukaryotes (yes, from all walks of life!), this is the conference for you - International Symposium on ssDNA Viruses (ISS3DV)! isdv2026.com
The deadline for the early bird registration is approaching...
January 16, 2026 at 4:53 PM
Reposted by Miguel Gómez-Raya
Dominant contribution of Asgard archaea to eukaryogenesis

www.nature.com/articles/s41...
Client Challenge
www.nature.com
January 15, 2026 at 8:20 AM
Reposted by Miguel Gómez-Raya
Ordering of cell cycle events by regulated proteolysis is not just for eukaryotes:
@buzzbaum.bsky.social et al define mechanisms underlying switch-like degradation of archaeal ESCRT-III CvdB in Sulfolobus
Thanks to @reviewcommons.org for another #RefereedPreprint
link.springer.com/article/10.1...
January 12, 2026 at 2:19 PM
Reposted by Miguel Gómez-Raya
Two fantastic papers published back-to-back in @natmicrobiol.nature.com show that strictly lytic phages can persist intracellularly for long periods of time. Very much in line with ideas we had suggested in a recent study. Highly recommended reads 👇
www.nature.com/articles/s41...
January 9, 2026 at 9:50 AM
Reposted by Miguel Gómez-Raya
Proud of contributing to this work on archaeal chromosome segregation! Congrats, Rachel and Steve!
www.nature.com/articles/s41...
Coordination of chromosome segregation and cell division in the archaeon Sulfolobus acidocaldarius - Nature Communications
Very little is known about the molecular basis of chromosome segregation in archaea. Here, the authors describe conformational changes in the chromosome during the cell cycle of the archaeon Sulfolobu...
www.nature.com
December 22, 2025 at 1:54 AM
Reposted by Miguel Gómez-Raya
@peterfineran.bsky.social and colleagues develop Tn-seq for phages by leveraging anti-CRISPR (Acr) as a positive
selectable marker in the presence of CRISPR-Cas counter-selection, and identify essential genes in phage from non model orgs
www.biorxiv.org/content/10.6...
December 20, 2025 at 11:34 PM
Reposted by Miguel Gómez-Raya
1. As we recently joined BlueSky, we want to repost this story for all newcomers!

We sat down with @radler92.bsky.social to get more insight into the unique videos from his recent preprint on Promethearchaeota (formerly Asgard archaea).

doi.org/10.1101/2025...

(Videos and info below)
Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota)
Crawling motility is a hallmark of eukaryotic cells and requires a dynamic actin cytoskeleton, regulated adhesion, and spatially organized signalling pathways1–3. Asgard archaea (phylum Promethearchae...
doi.org
December 18, 2025 at 2:08 PM
Reposted by Miguel Gómez-Raya
Are you a long-time fan of Archaea, an extremophile-phile, or are you simply curious?

Either way, we have good news.
We’re delighted to announce the 2026 EMBO Workshop on Archaea, 6–10 July.

Sign up: meetings.embo.org/event/26-arc...

We look forward to seeing you in Cambridge, UK.

Please repost!
Molecular Biology of Archaea: Life Through the Prism of Archaea
In 1977, Woese and colleagues revealed Archaea as a distinct domain of life. Building on this insight, the discovery of Asgard archaea has strengthened the view that many hallmarks of eukaryotic cell…
meetings.embo.org
December 16, 2025 at 12:00 PM
Reposted by Miguel Gómez-Raya
Calling all archaeal enthusiasts! 🔬🔥 From molecular machines to microbial communities, Archaea never fail to surprise us!
We are excited to announce the 2026 EMBO Workshop on the Molecular Biology of Archaea, 6–10 July in Cambridge, UK!
Sign up here: meetings.embo.org/event/26-arc...
#ArchaeaSky
December 16, 2025 at 2:18 PM
Reposted by Miguel Gómez-Raya
Happy Holidarchaeays 🎅🏼🦠!!! Want to get on the nice list this year?? Well then make sure to tune in to Archaea Power Hour this Wednesday, Dec. 17th, at 10 AM EST / 4 PM CET! See the two exciting talks we have planned for you below and keep an eye on your email for the Zoom link.
December 13, 2025 at 1:47 AM
Reposted by Miguel Gómez-Raya
Delighted to share our new preprint: www.biorxiv.org/content/10.6...
We address a longstanding question about the role of the topoisomerase reverse gyrase in hyperthermophiles. Great collaboration with Baranello and @tobiaswarnecke.bsky.social groups. #Archaeasky #Microsky
Localised activity of reverse gyrase at gene regulatory elements
DNA topoisomerases are essential enzymes found in all cells, where they regulate DNA supercoiling. Reverse gyrase (RG) is a unique type of topoisomerase that introduces positive supercoils into DNA an...
www.biorxiv.org
December 11, 2025 at 1:15 PM
Reposted by Miguel Gómez-Raya
N. viennensis is a slightly irregular, spherically shaped archaeon. Notable for being the first isolated soil ammonia-oxidizing archaeon
December 8, 2025 at 7:16 AM
Reposted by Miguel Gómez-Raya
DAY 185
SPECIES 185 - Nitrosopumilus maritimus
STAGE: Archaea
MEDIUM: Arches Paper. Chromatek Watercolor. Sakura pen. Tombow pencils

N. maritimus is a key marine ammonia oxidizing archaeon.

#sciart #watercolor #archaea #painting #art #paint
December 7, 2025 at 7:33 AM
Reposted by Miguel Gómez-Raya
Online now: Discovery, characterization, and application of chromosomal integration sites in the hyperthermophilic archaeon Sulfolobus islandicus
Discovery, characterization, and application of chromosomal integration sites in the hyperthermophilic archaeon Sulfolobus islandicus
Integration sites in Sulfolobus islandicus M.16.4 were identified using the CRISPR-COPIES pipeline, prioritized with multi-omics data, and validated with a β-galactosidase assay. These characterized sites expand the genetic toolbox for Sulfolobus and enable its domestication for industrial biotechnology and drug delivery applications.
dlvr.it
December 6, 2025 at 4:15 PM
Reposted by Miguel Gómez-Raya
An Asgard Archaeon (Lokiarchaeum ossiferum) growing and retracting its arms
December 3, 2025 at 8:32 PM