Jonathan Parra
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jonathanparra.bsky.social
Jonathan Parra
@jonathanparra.bsky.social
Scientist ⚗️🔬. Ocean lover 🌊. Assistant Professor at University of Costa Rica 🌻. Research Associate at CENIBiot 🧬. #NaturalProducts #ChemicalEcology #DrugDiscovery

https://parralab.netlify.app/
Reposted by Jonathan Parra
Marine #sponges are generally considered biosynthetic "hotspots" (e.g. Theonella) - but does this always hold true? In our newest study led by @stephenjackson.bsky.social we are looking at Inflatella pellicula's biosynthetic capacity - and our results are surprising doi.org/10.1099/mgen...
New insights into the microbiome of the deep-sea sponge Inflatella pellicula and the secondary metabolic potential of metagenome-assembled genomes and the wider microbiome
Marine sponges are found in all of the world’s oceans, from the surface waters to the deepest abyssal zones. The marine sponge holobiont is a rich source of microbial and chemical diversity. Up to 63 ...
doi.org
January 13, 2026 at 6:54 AM
The Pseudonocardia ecology never disappoints. Wonderful work.
Ecological Interactions Drive Metabolomic Diversification in Amazonian Pseudonocardia Symbionts https://www.biorxiv.org/content/10.64898/2026.01.05.697768v1
January 12, 2026 at 4:24 PM
Salinirifamycins A–E: Rifamycin S Derivatives from the Brazilian Marine Actinomycete Salinispora arenicola | Journal of Natural Products pubs.acs.org/doi/full/10....
Salinirifamycins A–E: Rifamycin S Derivatives from the Brazilian Marine Actinomycete Salinispora arenicola
Five new rifamycin derivatives, named salinirifamycins A–E (1–5), were isolated from a Brazilian marine Salinispora arenicola (BRA-213) strain extract. The structures of the new rifamycins were elucid...
pubs.acs.org
January 5, 2026 at 3:51 PM
Reposted by Jonathan Parra
Big congratulations to my former PhD student, Max Chavarría, on his amazing career trajectory after returning to Costa Rica—now fittingly recognized with the country’s most prestigious National Science Award. A well-deserved honor & a real pleasure to see his work acknowledged by his own compatriots
January 1, 2026 at 6:19 AM
Reposted by Jonathan Parra
Our new paper on Salinispora is out in @asm.org #AppEnvMicro! @scrippsocean.bsky.social

Ever wonder if an actinomycete living in 1m² ocean sediment is just one big clonal colony?

We sequenced 99 Salinispora strains from a single Fiji reef plot to find out. 🧵1/8 doi.org/10.1128/aem....
December 12, 2025 at 2:29 AM
Reposted by Jonathan Parra
New preprint. Work led by @ainsley-beaton.bsky.social & Rebecca Devine.

They show the highly conserved Streptomyces MtrAB two component system activates ectoine production and triggers sporulation in response to osmotic stress in Streptomyces venezuelae

www.biorxiv.org/content/10.6...
MtrAB activates ectoine production and triggers sporulation in response to osmotic stress in Streptomyces venezuelae
The MtrAB two-component system is a master regulator of antibiotic biosynthesis in Streptomyces species. MtrA is also required for sporulation under certain growth conditions, which means that on some...
www.biorxiv.org
December 22, 2025 at 7:19 AM
Reposted by Jonathan Parra
Very happy to see this remarkable work published. Led by @tommclean.bsky.social and @ainsley-beaton.bsky.social. We show how Streptomyces bacteria sense & respond to misfolded secreted proteins. A great collaboration with @barriewilks.bsky.social

#microsky

1/2

journals.asm.org/doi/epub/10....
The conserved two-component systems CutRS and CssRS control the protein secretion stress response in Streptomyces
journals.asm.org
December 15, 2025 at 2:39 PM
Taxonomic and biosynthetic diversity of the marine actinomycete Salinispora across spatial scales | Applied and Environmental Microbiology journals.asm.org/doi/full/10....
Taxonomic and biosynthetic diversity of the marine actinomycete Salinispora across spatial scales | Applied and Environmental Microbiology
The marine actinomycete genus Salinispora has become a model organism for natural product discovery and to address actinomycete diversity and distributions in marine systems. While biogeographic patterns have been reported at global scales, contrasts have yet to be made with the species diversity that can be recovered from a single location. Here we sequenced the genomes of 96 S. arenicola strains cultured from marine sediments collected within a 1 m2 plot and compared the diversity detected to public genomes obtained from global collection sites. The results provide evidence of geographic isolation among S. arenicola populations and biosynthetic genes that are mobilized across population boundaries. Multi-omic analyses linked compounds to their respective biosynthetic genes and revealed compounds not previously reported from the genus. This study adds to our growing understanding of Salinispora diversity and biosynthetic potential.
journals.asm.org
December 11, 2025 at 7:40 PM
Reposted by Jonathan Parra
Have you ever used a #bioinformatics #database and were frustrated by its lack of coverage? Did you ever think about starting your own resource? We just published a new strategy for community-driven #biocuration, based on our experiences with the #MIBiG database (1/8)! doi.org/10.1093/bib/...
Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0
Abstract. Biocuration is essential to transform molecular sequence data into standardized, machine-readable resources. Such curated datasets enable compara
doi.org
December 11, 2025 at 7:19 PM
Recommended reading for those of us who study actinomycetes using untargeted metabolomics. Incredible work by @amcaraballor.bsky.social, @pieterdorrestein.bsky.social, and collaborators. rdcu.be/eSRxT
The undiscovered natural product potential of Actinomycetes
The Journal of Antibiotics - The undiscovered natural product potential of Actinomycetes
rdcu.be
December 3, 2025 at 10:40 PM
Reposted by Jonathan Parra
Deeply care about #conservation?

Then listen to @gilbertjacka.bsky.social from @scrippsocean.bsky.social discuss the importance of microbial conservation as the foundation for all other conservation (including us macrobes).

www.sciencefriday.com/segments/mic...
Can A Microbe Conservation Movement Take Off?
Microbes make up about 99% of all species, but they’re not part of any global conservation plans. One group is trying to change that.
www.sciencefriday.com
December 2, 2025 at 4:35 PM
Reposted by Jonathan Parra
GlcNAc build-up acts as a key metabolic signal in #Streptomyces, but how does it triggers developmental responses? @gillesvanwezel.bsky.social &co show that the enzyme NagS dehydrates GlcNAc-6P into a reactive intermediate, triggering a toxicity-based checkpoint @plosbiology.org 🧪 plos.io/44pE08I
November 28, 2025 at 2:01 PM
Reposted by Jonathan Parra
Read the latest Microbe Profile on Streptomyces formicae KY5: an ANT-ibiotic factory. Published Open Access and fee-free in Microbiology using a Publish and Read agreement: doi.org/10.1099/mic.... #MicrobioJ #PublishAndRead
November 22, 2025 at 2:32 AM
Discovery of Spiroketal Acids and Antarmycin Analogues from Deep-Sea Derived Pseudonocardia antarctica and Its ΔantB3 Mutant Strain | Journal of Natural Products pubs.acs.org/doi/full/10....
Discovery of Spiroketal Acids and Antarmycin Analogues from Deep-Sea Derived Pseudonocardia antarctica and Its ΔantB3 Mutant Strain
This study reports the discovery of eight new polyketide natural products from the deep-sea actinomycete Pseudonocardia antarctica SCSIO 07407 and its ΔantB3 mutant strain. Through OSMAC (One Strain M...
pubs.acs.org
November 18, 2025 at 8:11 PM
Reposted by Jonathan Parra
Molecules to medicine: advances in metabolomics for natural product drug discovery by Victoria Deleray,
Pieter C Dorrestein & Nicole E Avalon
#naturalproducts #secmet #metabolomics
www.sciencedirect.com/science/arti...
Molecules to medicine: advances in metabolomics for natural product drug discovery
Recent advances in metabolomics are accelerating natural product (NP) drug discovery. NPs possess diverse biological relevance and comprise a signific…
www.sciencedirect.com
November 4, 2025 at 2:35 PM
Reposted by Jonathan Parra
EVENT - Apply today for the John Innes/Rudjer Bošković: Applied #Molecular #Microbiology Summer School (Microbial Specialised Metabolites: Discovery, Biosynthesis and Function)

🗓️ 12 - 20 Sept 2026

📍Inter-University Centre, Dubrovnik, Croatia

Deadline: 23 Jan 2026

www.jic.ac.uk/training-car...
Applied Molecular Microbiology | John Innes Centre
John Innes/Rudjer Bošković – Summer Schools in Applied Molecular Microbiology Applications are invited for a summer school on Microbial Specialised Metabolites: Discovery…
www.jic.ac.uk
November 7, 2025 at 5:18 PM
Genome-Mining Based Discovery of Pyrrolomycin K and L from the Termite-Associated Micromonospora sp. RB23 | Journal of Natural Products pubs.acs.org/doi/full/10....
Genome-Mining Based Discovery of Pyrrolomycin K and L from the Termite-Associated Micromonospora sp. RB23
Natural products derived from symbiotic microbes remain a rich source of structurally diverse and bioactive molecules. In this study, we report de novo genome sequencing of the termite-associated iso...
pubs.acs.org
November 11, 2025 at 7:24 PM
Reposted by Jonathan Parra
By studying the process through which a soil bacterium naturally produces a well-known drug, scientists have discovered a powerful antibiotic that could help to fight drug-resistant infections

go.nature.com/4oyN3wc
Powerful new antibiotic that can kill superbugs discovered in soil bacteria
Nature - Surprise discovery could pave the way for new treatments against drug-resistant infections.
go.nature.com
November 9, 2025 at 3:09 PM
I had a great time at EMIC, sponsored by @asm.org, in Cali, Colombia. Meetings in Latin America have a vibe that's hard to describe. Amazing scientific chats with Cuauhtémoc Licona from UNAM and Pablo Cruz from DTU. Many thanks to Luz González for organizing the event.
November 8, 2025 at 12:53 PM
Reposted by Jonathan Parra
Ozempic, MRI machines and flat screen televisions all emerged out of fundamental research decades earlier — the very types of study being slashed by the US government

go.nature.com/47hn0n5
7 basic science discoveries that changed the world
Ozempic, MRI machines and flat screen televisions all emerged out of fundamental research decades earlier — the very types of study being slashed by the US government.
go.nature.com
November 1, 2025 at 5:39 PM
Reposted by Jonathan Parra
Work with actinomycetes or mycobacteria? Dedicated symposia shine the spotlight on these remarkable bacteria at #Microbio26 in Belfast. Explore the full variety of sessions and submit your work today.

Abstract submissions close on 11 November: microb.io/AC26Abstracts
November 2, 2025 at 12:01 PM
Reposted by Jonathan Parra
Antimicrobial resistance is projected to cause 39 million deaths worldwide over the next 25 years

go.nature.com/42x5KHD
The rise of ‘nightmare bacteria’: antimicrobial resistance in six charts
Data reveal how the global challenge to reduce deaths and infections from drug-resistant bacteria is not going according to plan.
go.nature.com
October 7, 2025 at 4:26 PM
Discovery and Biosynthesis of Cinnamoyl-Containing Pepticinnamins Q–V Produced by the Marine-Derived Streptomyces sp. SCSIO 68065 | Journal of Natural Products pubs.acs.org/doi/full/10....
Discovery and Biosynthesis of Cinnamoyl-Containing Pepticinnamins Q–V Produced by the Marine-Derived Streptomyces sp. SCSIO 68065
Guided by comprehensive bioinformatic analysis and global molecular networking, four previously undescribed peptidic natural products, pepticinnamins Q–T (1–4), along with two known analogues (5, 6), ...
pubs.acs.org
October 7, 2025 at 4:41 PM
Reposted by Jonathan Parra
Come and work with me and @ariannebabina.bsky.social on #Streptomyces evolution and antibiotic production

Origins of a tangled bank: Adaptation and evolution in antibiotic-producing Streptomyces

www.gla.ac.uk/postgraduate...

please repost
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Underpinning Bioscience - Paul A Hoskisson
www.gla.ac.uk
September 30, 2025 at 11:02 AM
Reposted by Jonathan Parra
Happy to share our newest preprint. PhyloNaP as a user friendly database of phylogeny for enzymes involved in natural product production and as public repository for well curated phylogenetic trees. Happy Tree Building!!!
#phylogeny #secmet #bioinformatics

www.biorxiv.org/content/10.1...
PhyloNaP: a user-friendly database of Phylogeny for Natural Product-producing enzymes
Phylogenetic analysis is widely used to predict enzyme function, yet building annotated and reusable trees is labor-intensive and requires extensive knowledge about the specific enzymes. Existing reso...
www.biorxiv.org
September 27, 2025 at 9:32 AM