Ieva Drulyte
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ievadr.bsky.social
Ieva Drulyte
@ievadr.bsky.social
Structural biologist | CryoCloud 🔬☁️ | Posts about #cryoEM, some running and cats | Views my own | She/her
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Excited to share that our book chapter on #cryoEM epitope mapping, co‑written with my favourite collaborator @danielhurdiss.bsky.social, is now out! 🔬

It captures learnings from many biologics projects & we hope it’s a useful resource for structural immunologists!

link.springer.com/protocol/10....
Heading to #PSDI2025 in Basel! Excited for good science, great discussions and familiar faces. Come say hi or book a chat with us!
We’re heading to #PSDI2025!

Meet the CryoCloud team and don’t miss our talks:
⚡ Sun 9 Nov: Towards Automating Cryo-EM Data Analysis
🚀 Tue 11 Nov: Accelerating Data Analysis with CryoCloud

Drop by our booth or book a chat 👇
connect.cryocloud.io/meetings/cry...

#CryoEM #XrayCrystallography
November 5, 2025 at 8:42 AM
Reposted by Ieva Drulyte
Thrilled, and admittedly relieved, to see this major investment in Dutch #cryoEM become reality! 🇳🇱🔬

Honoured to be a co-applicant on this national initiative and very excited for the opportunity to advance our work in cellular structural virology! 🦠

www.uu.nl/en/news/33-m...
33 million euro investment for national electron microscope facility EMPower
A major new national facility for electron microscopy, called EMPower, has been awarded to a consortium of Dutch universities and medical centers. EMPower aims to pave the way for major discoveries im...
www.uu.nl
November 3, 2025 at 4:47 PM
Reposted by Ieva Drulyte
Celebrate #NationalCatDay with the cats of RCSB PDB!
October 29, 2025 at 4:55 PM
Reposted by Ieva Drulyte
😬
Yikes! In this paper the AlphaFold model of human plasminogen (PDB-8uq6) has been refined into noise (EMD-42462) using Phenix & ISOLDE. For some reason the authors even interpret side-chain interactions:
#cryoEM
October 12, 2025 at 11:42 AM
Reposted by Ieva Drulyte
Yikes! In this paper the AlphaFold model of human plasminogen (PDB-8uq6) has been refined into noise (EMD-42462) using Phenix & ISOLDE. For some reason the authors even interpret side-chain interactions:
#cryoEM
October 12, 2025 at 11:03 AM
Reposted by Ieva Drulyte
✨Excited that the main project of my PhD is now available as a pre-print on #bioRxiv

Here, we used #CryoET to visualise mitochondrial proteostatic stress and together with SPA #CryoEM shed light into the functional cycle of the Hsp60:10 chaperone system. #TeamTomo

🔗 www.biorxiv.org/content/10.1...
October 8, 2025 at 3:59 PM
Reposted by Ieva Drulyte
Initial attempt at replicating in relion (parameters in next post). This is for Aca2-RNA, using a 100k subset of the 2D-classified particles (no prior 3D cleanup).

A 1-class ab initio in relion, then local refinement in relion (1.8deg searches+blush) gives a nominally 3.3Å map; 3.5 Å w/out blush.
September 26, 2025 at 2:28 AM
Reposted by Ieva Drulyte
📣 Live from the Dutch Structural Biology Meeting in Delft! Robert (@riborob.bsky.social) is presenting our CryoCloud poster on accelerating #cryoEM workflows. We’re also sponsoring the Poster Prize 🧦🎉 Big thanks to Arjen Jakobi (@cryotud.bsky.social) for organising. Excited for today’s discussions!
September 26, 2025 at 12:22 PM
Reposted by Ieva Drulyte
September Map of the Month: Small Data, Big Insights ⚡️

From just 233 movies, CryoCloud delivered a 3.2 Å SARS-CoV-2 spike map in 3.5 h.

Fast and efficient #cryoEM, exactly what vaccine design teams need when screening dozens of antigen variants per day.

📬 DM or hi@cryocloud.io for more info!
September 24, 2025 at 12:23 PM
Reposted by Ieva Drulyte
Coming up next week: the third Dutch Structural Biology meeting! Now in Delft, on Sept 26. See program here: nvbmb.kncv.nl/biology-2025 with #teamtomo #cryoEM #nmrchat simulations and more (looks like)

Organized by the #NVBMB (associated with KNCV)
Dutch Structural Biology Meeting 2025 - NVBMB
nvbmb.kncv.nl
September 18, 2025 at 9:02 PM
So happy to have you on board, @jbrwhite.bsky.social!
Thrilled to welcome Dr Joshua White as Senior Application Scientist at CryoCloud! With deep expertise in single-particle analysis & end-to-end #cryoEM workflows, Josh will lead data analysis, user training & support. Excited to have his experience & energy on board! 🚀

@jbrwhite.bsky.social
September 19, 2025 at 11:53 AM
A few snaps from @cryocloudio.bsky.social retreat in the Belgian Ardennes 📸🌿

We mixed focused work sessions with walks and shared meals, late-night Jenga battles, and plenty of time socialising. We even spotted deer in the garden 🦌

And yes, we also launched our own #cryoEM socks!
September 18, 2025 at 8:59 AM
Reposted by Ieva Drulyte
The CryoCloud team just returned from a retreat in the Belgian Ardennes 🌿 For the first time, all 11 of us met in person, with colleagues from 6 countries. We had work sessions, walks, meals, spotted deer 🦌 … and launched our first edition of CryoCloud #cryoEM socks! 🚀
September 15, 2025 at 8:50 AM
Reposted by Ieva Drulyte
August Map of the Month: Epitope Mapping edition!

We reprocessed EMD-19016 and got a 2.7 Å map of PDCoV RBD in complex with two neutralising Fabs ✨

📊 4,736 movies
⚡️ 35.5 h cloud compute
🔬 2.7 Å map from 120k particles (0.3 Å better than published)

📬 DM or hi@cryocloud.io for more info!

#CryoEM
August 21, 2025 at 9:25 AM
Reposted by Ieva Drulyte
Best thing is to come back from ⛰️vacation☀️ to find a manuscript has metamorphosed into a published paper, so..

🚀 Check out our paper on hormone import⏬ into plant cells in @natplants.nature.com 🌱👇

www.nature.com/articles/s41...
August 13, 2025 at 7:53 AM
Reposted by Ieva Drulyte
Sofia Lövestam's vault structure is now online in Structure @cellpress.bsky.social. 🥳

How beautifully explorative is #cryoEM! We never planned to do this. The vaults just came down with #amyloids from human brain tissue, and Sofia decided to have a closer look.

www.cell.com/structure/fu...
Cryo-EM structure of the vault from human brain reveals symmetry mismatch at its caps
Lövestam and Scheres present a cryo-EM structure of vault particles, found during tau filament extraction from progressive supranuclear palsy (PSP) brain tissue. They reveal a symmetry shift at the va...
www.cell.com
August 12, 2025 at 4:05 PM
Reposted by Ieva Drulyte
🚨 We’re hiring! 🚨

We’re looking for a Correlative Imaging Scientist to join our EM team at ABSL!

You will be developing and supporting cryo-EM & cryo-CLEM workflows across multiple imaging platforms (FIB-SEM, cryo-confocal, cryo-EM).

Any questions? Get in touch!

jobs.leeds.ac.uk/Vacancy.aspx...
Job Opportunity at University of Leeds: Correlative Imaging Scientist
Are you a creative postdoctoral-scientist keen to explore novel in-situ biology with cryogenic electron tomography? Do you have a background in imaging technologies and/or image processing?We are look...
jobs.leeds.ac.uk
August 11, 2025 at 9:46 AM
Reposted by Ieva Drulyte
Cryo-EM Structures Uncover Diverse L and P Protein Interactions in Nipah Virus Polymerase Among Paramyxoviruses

In a groundbreaking advance that significantly deepens our understanding of viral replication machinery, researchers have unveiled high-resolution cryo-electron microscopy (cryo-EM)…
Cryo-EM Structures Uncover Diverse L and P Protein Interactions in Nipah Virus Polymerase Among Paramyxoviruses
In a groundbreaking advance that significantly deepens our understanding of viral replication machinery, researchers have unveiled high-resolution cryo-electron microscopy (cryo-EM) structures of the Nipah virus (NiV) polymerase complex. This detailed structural insight opens new avenues for the design of antiviral agents targeting a highly pathogenic zoonotic virus responsible for severe and often fatal human infections. Nipah virus, an emergent member of the Paramyxoviridae family, poses a persistent public health threat due to its zoonotic nature and the absence of approved therapeutics.
scienmag.com
August 8, 2025 at 9:36 PM
Reposted by Ieva Drulyte
Not my area at all, but how cool are these cryoEM structures of purely RNA-based assemblies!
www.nature.com/articles/s41...
August 6, 2025 at 10:42 PM
Reposted by Ieva Drulyte
Nice cover showing cryo-EM derived structures of p53 binding to nucleosomes. Great work from the Thoma lab:
www.cell.com/molecular-ce...
August 7, 2025 at 3:15 PM
Reposted by Ieva Drulyte
🔐 Cloud Security Part 2

In this second post of our security FAQ series, we are digging into what happens behind the scenes to keep your data safe every single day.

➡️ Click through to learn more about how we manage access, monitor activity, and keep your data safe.

#CloudSecurity #CryoEM
August 6, 2025 at 10:13 AM
Reposted by Ieva Drulyte
New preprint: In situ Architecture of #Plasmodesmata.

Using #cryoET, #AlphaFold & proteomics, we uncover the native organization of plant intercellular nanopores.

🔗 doi.org/10.1101/2025...

🧪🧵1/n
#teamtomo #PlantScience #Physcomitrium #Arabidopsis #cryoEM
July 26, 2025 at 3:38 PM
Reposted by Ieva Drulyte
Discover the cryo-EM structure of honey bee vitellogenin, revealing insights into its roles in immunity, antioxidant defense, behavior, & longevity. PMID:40593495, Nat Commun 2025, @NatureComms https://doi.org/10.1038/s41467-025-58575-y #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Cryo-EM structure of native honey bee vitellogenin | Nature Communications
Vitellogenin (Vg) is the main yolk precursor lipoprotein in almost all egg-laying animals. In addition, along its evolutionary history, Vg has developed a range of new functions in different taxa. In the honey bee, Vg has functions related to immunity, antioxidant protection, social behavior and longevity. However, the molecular mechanisms underlying Vg functionalities are still poorly understood. Here, we report the cryo-EM structure of full-length honey bee Vg, one-step purified directly from hemolymph. The structure provides structural insights into the overall domain architecture, including the lipid binding cavity and the previously uncharacterized von Willebrand factor type D domain. A domain of unknown function has been identified as a C-terminal cystine knot domain based on structural homology. Information about post-translational modifications, cleavage products, metal and lipid binding allow an improved understanding of the mechanisms underlying the range of Vg functionalitie
doi.org
August 3, 2025 at 2:10 AM
Reposted by Ieva Drulyte
🔐 Cloud Security Part 1

We often get asked about cloud security – and rightly so.

In this three-part series, we’re addressing the most common questions we hear from customers.

➡️ Click through to find out how we protect your data with end-to-end encryption and built-in redundancy.

#Cloud #CryoEM
July 31, 2025 at 7:13 AM