Hide Doi Lab.
@doi-lab.bsky.social
Hide Doi Lab., Biosphere Informatics Lab., Kyoto University, Japan.
We are interested in ecology and environmental sciences, especially, community ecology, food web, eDNA, climate change https://ecologyweb.jimdofree.com
We are interested in ecology and environmental sciences, especially, community ecology, food web, eDNA, climate change https://ecologyweb.jimdofree.com
Pinned
Hide Doi Lab.
@doi-lab.bsky.social
· Sep 24
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
www.pnas.org
We published a new paper in PNAS to define the Anthropocene onset using anthropogenic fingerprints in global geological archives. We found that the number of anthropogenic fingerprints began to increase abruptly from 1952 ± 3 CE.
www.pnas.org/doi/10.1073/...
www.pnas.org/doi/10.1073/...
Reposted by Hide Doi Lab.
Led by Wim Kaijser, we published a global analysis on how five different organism groups respond to seven stressor categories. New paper in Nature Ecology & Evolution. www.nature.com/articles/s41....
Meta-analysis-derived estimates of stressor–response associations for riverine organism groups - Nature Ecology & Evolution
This global meta-analysis of freshwater stressor–response relationships reveals that the biodiversity loss of five riverine organism groups reflects elevated salinity, oxygen depletion and fine sedime...
www.nature.com
November 11, 2025 at 4:16 PM
Led by Wim Kaijser, we published a global analysis on how five different organism groups respond to seven stressor categories. New paper in Nature Ecology & Evolution. www.nature.com/articles/s41....
Reposted by Hide Doi Lab.
Our new publication on HOBIT, a software tool for polyploid gene expression analysis. Compared with our previous method HomeoRoq (2014), HOBIT enables direct and higher-quality analysis of complex allohexaploid species such as bread wheat.
HOBIT: LRT to detect homeolog expression shifts in allopolyploids
Sun et al.
nph.onlinelibrary.wiley.com/doi/10.1111/...
Sun et al.
nph.onlinelibrary.wiley.com/doi/10.1111/...
October 28, 2025 at 7:32 PM
Our new publication on HOBIT, a software tool for polyploid gene expression analysis. Compared with our previous method HomeoRoq (2014), HOBIT enables direct and higher-quality analysis of complex allohexaploid species such as bread wheat.
Reposted by Hide Doi Lab.
Women, non-native English speakers & those form low-income countries are disadvantaged in science but by how much? We found that women with non-English first languages from low-income countries publish up to 70% fewer in English than their counterparts. 1/5
doi.org/10.1371/jour...
#languagebarriers
doi.org/10.1371/jour...
#languagebarriers
September 19, 2025 at 2:46 AM
Women, non-native English speakers & those form low-income countries are disadvantaged in science but by how much? We found that women with non-English first languages from low-income countries publish up to 70% fewer in English than their counterparts. 1/5
doi.org/10.1371/jour...
#languagebarriers
doi.org/10.1371/jour...
#languagebarriers
We have a special seminar (Hybrid) on 23 May (Fri.) 13:15-14:15 (JST)
Prof. Dr. Matthias C. Rillig (Freie Universitaet Berlin, Germany）
"Effects of multiple concurrent global change drivers on soils and ecosystems"
You can get the Zoom link:
kyoto-u-edu.zoom.us/meeting/regi...
Prof. Dr. Matthias C. Rillig (Freie Universitaet Berlin, Germany）
"Effects of multiple concurrent global change drivers on soils and ecosystems"
You can get the Zoom link:
kyoto-u-edu.zoom.us/meeting/regi...
May 20, 2025 at 6:53 AM
We have a special seminar (Hybrid) on 23 May (Fri.) 13:15-14:15 (JST)
Prof. Dr. Matthias C. Rillig (Freie Universitaet Berlin, Germany）
"Effects of multiple concurrent global change drivers on soils and ecosystems"
You can get the Zoom link:
kyoto-u-edu.zoom.us/meeting/regi...
Prof. Dr. Matthias C. Rillig (Freie Universitaet Berlin, Germany）
"Effects of multiple concurrent global change drivers on soils and ecosystems"
You can get the Zoom link:
kyoto-u-edu.zoom.us/meeting/regi...
Reposted by Hide Doi Lab.
というわけで論文出ました。サイエンス誌のトップページをトクノシマカンアオイとその送粉者の写真が飾っています。ちょっと自分でも信じられないです。
www.science.org
www.science.org
Science | AAAS
Science/AAAS peer-reviewed journals deliver impactful research, daily news, expert commentary, and career resources.
www.science.org
May 8, 2025 at 9:34 PM
というわけで論文出ました。サイエンス誌のトップページをトクノシマカンアオイとその送粉者の写真が飾っています。ちょっと自分でも信じられないです。
www.science.org
www.science.org
Reposted by Hide Doi Lab.
A paper with Miguel Gómez-Llano and @adamsiepielski.bsky.social entitled "Sexual conflict in resident species can facilitate establishment of a maladapted invader" was published in Am. Nat. @asn-amnat.bsky.social! doi.org/10.1086/736568
Sexual conflict in resident species can facilitate establishment of a maladapted invader | The American Naturalist: Vol 0, No ja
doi.org
May 8, 2025 at 11:29 PM
A paper with Miguel Gómez-Llano and @adamsiepielski.bsky.social entitled "Sexual conflict in resident species can facilitate establishment of a maladapted invader" was published in Am. Nat. @asn-amnat.bsky.social! doi.org/10.1086/736568
We published a review paper on the application of deep metric learning, a new deep learning method, to ecosystem monitoring.
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Accelerating ecosystem monitoring through computer vision with deep metric learning
Significant progress has been made in the application of deep learning models to ecosystem monitoring. Deep learning has opened up new opportunities i…
www.sciencedirect.com
May 9, 2025 at 12:42 AM
We published a review paper on the application of deep metric learning, a new deep learning method, to ecosystem monitoring.
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Reposted by Hide Doi Lab.
おお、岡村さんが本を出版されている。 www.kyoritsu-pub.co.jp/book/b101311... Template Model Builderも扱われているらしい。MCMCではなく最尤法なのに複雑なモデルが謎に収束する例のアレ。点推定したいときや検定したいときに便利。
Rで学ぶ個体群生態学と統計モデリング - 共立出版
岡村 寛 著
www.kyoritsu-pub.co.jp
May 1, 2025 at 5:30 AM
おお、岡村さんが本を出版されている。 www.kyoritsu-pub.co.jp/book/b101311... Template Model Builderも扱われているらしい。MCMCではなく最尤法なのに複雑なモデルが謎に収束する例のアレ。点推定したいときや検定したいときに便利。
Reposted by Hide Doi Lab.
The distribution and behaviour of microplastics in the ocean is influenced by their size, with some microplastics potentially entering carbon cycles, according to a study in Nature. go.nature.com/3ScX6Zd 🌊 🧪
May 1, 2025 at 1:12 PM
The distribution and behaviour of microplastics in the ocean is influenced by their size, with some microplastics potentially entering carbon cycles, according to a study in Nature. go.nature.com/3ScX6Zd 🌊 🧪
Reposted by Hide Doi Lab.
Our study ‘The #global #human impact on #biodiversity’ is out in @nature.com: www.nature.com/articles/s41...
🌍🌐🐟🌿🪲
Unprecedented synthesis of >2000 studies led by @francoiskeck.bsky.social shows humans are not only shrinking species numbers—but reshaping entire communities across the planet.
🧵1/5
🌍🌐🐟🌿🪲
Unprecedented synthesis of >2000 studies led by @francoiskeck.bsky.social shows humans are not only shrinking species numbers—but reshaping entire communities across the planet.
🧵1/5
March 26, 2025 at 9:19 PM
Our study ‘The #global #human impact on #biodiversity’ is out in @nature.com: www.nature.com/articles/s41...
🌍🌐🐟🌿🪲
Unprecedented synthesis of >2000 studies led by @francoiskeck.bsky.social shows humans are not only shrinking species numbers—but reshaping entire communities across the planet.
🧵1/5
🌍🌐🐟🌿🪲
Unprecedented synthesis of >2000 studies led by @francoiskeck.bsky.social shows humans are not only shrinking species numbers—but reshaping entire communities across the planet.
🧵1/5
Reposted by Hide Doi Lab.
We offer a 5-year research position in the #PlanktonEcology lab in Wilhelmshaven. Are you interested in empirically testing ecological concepts? We offer a stimulating scientific environment, experimental facilities & support to establish an independent research profile
uol.de/en/job/postd...
uol.de/en/job/postd...
Postdoctoral researcher in Plankton Ecology // University of Oldenburg
uol.de
April 15, 2025 at 5:59 PM
We offer a 5-year research position in the #PlanktonEcology lab in Wilhelmshaven. Are you interested in empirically testing ecological concepts? We offer a stimulating scientific environment, experimental facilities & support to establish an independent research profile
uol.de/en/job/postd...
uol.de/en/job/postd...
Reposted by Hide Doi Lab.
@icbm-uol.bsky.social offers a fully funded professorship in theoretical oceanography. Join a great team of physicists, chemists, and biologists working on the marine environment. Oldenburg is a truly livable city and connected to a range of marine institutes in NW Germany
uol.de/en/job/w2-pr...
uol.de/en/job/w2-pr...
Professorship in Theoretical Physical Oceanography // University of Oldenburg
uol.de
April 3, 2025 at 5:47 PM
@icbm-uol.bsky.social offers a fully funded professorship in theoretical oceanography. Join a great team of physicists, chemists, and biologists working on the marine environment. Oldenburg is a truly livable city and connected to a range of marine institutes in NW Germany
uol.de/en/job/w2-pr...
uol.de/en/job/w2-pr...
Reposted by Hide Doi Lab.
I’m thrilled to finally share our new dataset paper-years in the making! This has been an incredible rewarding project, and it was a true pleasure to work with such an amazing team of researchers. Huge thanks to supported by @idiv for the support www.nature.com/articles/s41...
StoichLife: A Global Dataset of Plant and Animal Elemental Content - Scientific Data
Scientific Data - StoichLife: A Global Dataset of Plant and Animal Elemental Content
www.nature.com
April 3, 2025 at 6:36 PM
I’m thrilled to finally share our new dataset paper-years in the making! This has been an incredible rewarding project, and it was a true pleasure to work with such an amazing team of researchers. Huge thanks to supported by @idiv for the support www.nature.com/articles/s41...
Reposted by Hide Doi Lab.
We were honored to celebrate with our Awardees at the ceremony. Congratulations to all!👏
From left to right: Hiroshi Tomimatsu (EiC of Ecological Research @hrstm.bsky.social ), Kohmei Kadowaki, Naoyuki Nakahama @naoyukinkhm.bsky.social, Samuel R. P.-J. Ross
#ESJ72 #ERPaperAward
From left to right: Hiroshi Tomimatsu (EiC of Ecological Research @hrstm.bsky.social ), Kohmei Kadowaki, Naoyuki Nakahama @naoyukinkhm.bsky.social, Samuel R. P.-J. Ross
#ESJ72 #ERPaperAward
March 15, 2025 at 12:08 PM
We were honored to celebrate with our Awardees at the ceremony. Congratulations to all!👏
From left to right: Hiroshi Tomimatsu (EiC of Ecological Research @hrstm.bsky.social ), Kohmei Kadowaki, Naoyuki Nakahama @naoyukinkhm.bsky.social, Samuel R. P.-J. Ross
#ESJ72 #ERPaperAward
From left to right: Hiroshi Tomimatsu (EiC of Ecological Research @hrstm.bsky.social ), Kohmei Kadowaki, Naoyuki Nakahama @naoyukinkhm.bsky.social, Samuel R. P.-J. Ross
#ESJ72 #ERPaperAward
Reposted by Hide Doi Lab.
Nice to see our opinion paper on #species #range #shifts & #species #traits among the 🔟 most downloaded papers in 2024 in #GCB 🌏🌐🧪
@globalchangebio.bsky.social
shorturl.at/j7tQW
@globalchangebio.bsky.social
shorturl.at/j7tQW
Bringing traits back into the equation: A roadmap to understand species redistribution
In this opinion piece, we explore under which circumstances species traits are expected to explain the rates and directions of species redistributions in response to climate change and discuss how fu...
shorturl.at
February 5, 2025 at 7:50 PM
Nice to see our opinion paper on #species #range #shifts & #species #traits among the 🔟 most downloaded papers in 2024 in #GCB 🌏🌐🧪
@globalchangebio.bsky.social
shorturl.at/j7tQW
@globalchangebio.bsky.social
shorturl.at/j7tQW
Reposted by Hide Doi Lab.
We are announcing a postdoc position in population genetics at Halmstad Uni, Sweden
Project is to investigate population structure of salmonoid fish at different scales, using a variety of methods. One goal is to evaluate eDNA a a tool for population genetics.
hh.varbi.com/en/what:job/...
Project is to investigate population structure of salmonoid fish at different scales, using a variety of methods. One goal is to evaluate eDNA a a tool for population genetics.
hh.varbi.com/en/what:job/...
Postdoctoral position in biology
Halmstad University Work at a University where different perspectives meet! Halmstad University adds value, drives innovation and prepares people and society for the future. Since the beginning in 198
hh.varbi.com
December 20, 2024 at 7:46 AM
We are announcing a postdoc position in population genetics at Halmstad Uni, Sweden
Project is to investigate population structure of salmonoid fish at different scales, using a variety of methods. One goal is to evaluate eDNA a a tool for population genetics.
hh.varbi.com/en/what:job/...
Project is to investigate population structure of salmonoid fish at different scales, using a variety of methods. One goal is to evaluate eDNA a a tool for population genetics.
hh.varbi.com/en/what:job/...
Reposted by Hide Doi Lab.
Hydropower impacts on riverine biodiversity. A paper recently out in Nature Reviews - Earth and Environment with @fengzhihe.bsky.social @scjaehnig.bsky.social jcsvenning.bsky.social and others! A good one-stop shop for understanding the impacts of hydropower dams. www.nature.com/articles/s43...
Hydropower impacts on riverine biodiversity - Nature Reviews Earth & Environment
Hydropower is a renewable energy source that can contribute to growing energy demands. This Review considers the ecological consequences of hydropower plants on riverine systems and emphasizes the urg...
www.nature.com
November 25, 2024 at 1:30 AM
Hydropower impacts on riverine biodiversity. A paper recently out in Nature Reviews - Earth and Environment with @fengzhihe.bsky.social @scjaehnig.bsky.social jcsvenning.bsky.social and others! A good one-stop shop for understanding the impacts of hydropower dams. www.nature.com/articles/s43...
Reposted by Hide Doi Lab.
I started an #eDNA starter pack as one didn’t exist yet. Feel free to message me to get your name added. Open to all! go.bsky.app/U2vgV5Q
November 17, 2024 at 7:23 AM
I started an #eDNA starter pack as one didn’t exist yet. Feel free to message me to get your name added. Open to all! go.bsky.app/U2vgV5Q
Reposted by Hide Doi Lab.
Updated Limnology! starter pack here: go.bsky.app/Qv3DLZ6
November 23, 2024 at 12:25 AM
Updated Limnology! starter pack here: go.bsky.app/Qv3DLZ6
Reposted by Hide Doi Lab.
Let‘s try a #metabarcoding starter pack to nucleate people interested. Welcome molecular #biodiversity monitoring people. Let’s try to keep us posted on updates regarding papers, projects, methods. Happy weekend.☀️#eDNA
go.bsky.app/Qvqgknp
go.bsky.app/Qvqgknp
November 22, 2024 at 8:18 PM
Let‘s try a #metabarcoding starter pack to nucleate people interested. Welcome molecular #biodiversity monitoring people. Let’s try to keep us posted on updates regarding papers, projects, methods. Happy weekend.☀️#eDNA
go.bsky.app/Qvqgknp
go.bsky.app/Qvqgknp
Reposted by Hide Doi Lab.
Here's a Limnology starter pack! I am sure I left great people out so tag me so I can add them. go.bsky.app/Qv3DLZ6
November 22, 2024 at 6:37 PM
Here's a Limnology starter pack! I am sure I left great people out so tag me so I can add them. go.bsky.app/Qv3DLZ6
We published a new paper in PNAS to define the Anthropocene onset using anthropogenic fingerprints in global geological archives. We found that the number of anthropogenic fingerprints began to increase abruptly from 1952 ± 3 CE.
www.pnas.org/doi/10.1073/...
www.pnas.org/doi/10.1073/...
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
www.pnas.org
September 24, 2024 at 3:04 PM
We published a new paper in PNAS to define the Anthropocene onset using anthropogenic fingerprints in global geological archives. We found that the number of anthropogenic fingerprints began to increase abruptly from 1952 ± 3 CE.
www.pnas.org/doi/10.1073/...
www.pnas.org/doi/10.1073/...
Reposted by Hide Doi Lab.
Very fun reunion with former lab members Hideyuki Doi @doi-lab.bsky.social and Izumi Katano. Thanks for the opportunity to talk about some ecological stability work, the great hospitality, and showing me around. Himeji Castle is truly amazing #PlanktonEcologyLab
March 22, 2024 at 12:13 PM
Very fun reunion with former lab members Hideyuki Doi @doi-lab.bsky.social and Izumi Katano. Thanks for the opportunity to talk about some ecological stability work, the great hospitality, and showing me around. Himeji Castle is truly amazing #PlanktonEcologyLab