Álvaro López Codina
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alcodina.bsky.social
Álvaro López Codina
@alcodina.bsky.social
Predoctoral Research Assistant at the Llorca lab @cniostopcancer.bsky.social working on mTORC1 signaling and cryo-EM ❄️🔬. Intrigued by the structural mechanisms of protein assemblies involved in endomembrane signaling and trafficking 🧪.
Reposted by Álvaro López Codina
Online Now: A role for human senataxin in contending with pausing and backtracking during transcript elongation Online now:
A role for human senataxin in contending with pausing and backtracking during transcript elongation
Han et al. use biochemistry and acute depletion of senataxin to reveal a role in RNAPII transcript elongation via reversal of pausing and backtracking. By contrast, senataxin has little direct effect on transcription termination.
dlvr.it
November 12, 2025 at 8:14 PM
Reposted by Álvaro López Codina
Sensory neuronal mTORC1 signaling establishes neuroimmune memory that initiates allergic immunity https://www.biorxiv.org/content/10.1101/2025.11.10.687723v1
November 12, 2025 at 8:18 PM
Reposted by Álvaro López Codina
Reposted by Álvaro López Codina
New paper alert! Researchers at the Proteomics Tech Hub at the @viennabiocenter.bsky.social have developed a new cross-linking mass spectrometry workflow that allows scientists to more easily detect and study protein interactions that were previously undetectable. More: bit.ly/4nV5n1w
November 12, 2025 at 9:25 AM
Reposted by Álvaro López Codina
Kinesin-1-driven microtubule sliding helps pancreatic β cells reorganise their cytoskeleton in response to glucose.
buff.ly/r3BlzFj
November 12, 2025 at 11:01 AM
Reposted by Álvaro López Codina
Special Issue: Macromolecular Assemblies is now live! Explore advances in cryoEM, cryoET, FIB milling, NMR, & AI for structure prediction. Discover cutting-edge insights into the structure & function of biological complexes. #StructuralBiology #CryoEM
spkl.io/63324AwAho
November 10, 2025 at 1:00 PM
Reposted by Álvaro López Codina
Kat Blow has developed CCD2MD, a suite of packages for preparing co-folded outputs for MD simulations.

Created for protein–lipid interactions in integral membrane proteins, it also works for peripheral and lipid-anchored proteins too.

pubs.acs.org/doi/full/10....

github.com/keb721/ccd2md
CCD2MD: A Suite of Packages for Preparing Co-Folded Outputs for Molecular Dynamics Simulations
Protein–lipid interactions play a crucial role in the stability and function of membrane proteins. While experimental approaches to characterize these interactions in a native-like membrane environmen...
pubs.acs.org
November 12, 2025 at 11:53 AM
Reposted by Álvaro López Codina
The protein and mRNA abundance voronoi diagrams offer remarkably different perspectives.

Each tile in the maps represents a gene product; its size is proportional to the fraction of the gene product in hepatocytes.
November 12, 2025 at 12:53 PM
Reposted by Álvaro López Codina
Insights into the regulation of VPS13 family bridge-like lipid transfer proteins from the structure of VPS13C. www.biorxiv.org/content/10.1101/2025.11.10.687702v1 #cryoem
November 12, 2025 at 1:17 PM
Reposted by Álvaro López Codina
Calculating the FSC curve on the Å−3 scale provides a balanced distribution of Fourier coefficients per shell, yielding more statistically equivalent values than working with the conventional scale #FSCCurve #ResolutionShells #InverseCubicResolution doi.org/10.1107/S205...
November 12, 2025 at 3:13 PM
Reposted by Álvaro López Codina
🚀 Introducing PDBe-KB Complexes — a new PDBe-KB resource for exploring macromolecular complexes across the PDB.

🔗 Explore (SARS-CoV-2 spike, PDB 9CXE): ebi.ac.uk/pdbe/pdbe-kb...

📄 Read the preprint: ssrn.com/abstract=568...

#PDBeKB #MacromolecularComplexes #StructuralBiology
November 12, 2025 at 3:16 PM
Reposted by Álvaro López Codina
@rpadinjat.bsky.social et al. find that in #Drosophila photoreceptors, Ca²⁺ influx through plasma membrane channels regulates membrane contact site density through extended synaptotagmin. rupress.org/jcb/article/...

📕 In Cellular Neurobiology collection: rupress.org/jcb/collecti...
#SfN25
November 12, 2025 at 4:15 PM
Reposted by Álvaro López Codina
Online now! Online now! An engineered cysteine sensor optimized for high-throughput screening identifies regulators of intracellular thiol levels #chembiol
An engineered cysteine sensor optimized for high-throughput screening identifies regulators of intracellular thiol levels
Abrams et al. used circular permutation to develop a reversible FRET-based cysteine sensor. Biochemical and cell-based experiments established the sensor’s sensitivity and selectivity for cysteine. High-throughput phenotypic screens identified compounds that modulate cysteine levels, establishing the sensor as a valuable tool for studying cellular cysteine regulation.
dlvr.it
November 12, 2025 at 4:30 PM
Reposted by Álvaro López Codina
Insights into the regulation of VPS13 family bridge-like lipid transfer proteins from the structure of VPS13C www.biorxiv.org/content/10.1...
Insights into the regulation of VPS13 family bridge-like lipid transfer proteins from the structure of VPS13C
Bridge-like lipid transfer proteins (BLTPs) play central roles in redistributing lipids from their primary site of synthesis in the endoplasmic reticulum to other organelles. They comprise bridge-doma...
www.biorxiv.org
November 12, 2025 at 4:43 PM
Reposted by Álvaro López Codina
Spotlight: @juanmartin-serrano.bsky.social highlights work from Dam, Moreno, Brownlow, @longchrom.bsky.social et al. (rupress.org/jcb/article/...), which reveals how Srs2/PARI act as a missegregated chromatin sensor for NoCut, delaying cytokinetic abscission. rupress.org/jcb/article/...
#Cytokinesis
November 12, 2025 at 5:01 PM
Reposted by Álvaro López Codina
SBGrid's eLife paper received a citation in October from Halil Aydin from @nyu.edu and Matteo Dal Peraro from @lbm-epfl.bsky.social , EPFL Lausanne in @natcomms.nature.com

Read more here: buff.ly/WpLjDy6

#SBGrid #StayConnected
Cardiolipin dynamics promote membrane remodeling by mitochondrial OPA1 - Nature Communications
This study reveals how cardiolipin governs mitochondrial morphology by modulating the activity of human OPA1 and how its replacement by monolyso-cardiolipin, as observed in Barth syndrome, impacts…
buff.ly
November 12, 2025 at 5:04 PM
Reposted by Álvaro López Codina
Systematic structural and functional analysis of metal-binding sites in native proteomes https://www.biorxiv.org/content/10.1101/2025.11.10.687516v1
November 12, 2025 at 5:16 PM
Reposted by Álvaro López Codina
Our lab’s paper spearheaded by Keni and pushed to completion (and satisfaction by the reviewers) by Satish is finally out www.nature.com/articles/s41.... Was so fortunate to contribute to this project and learned a lot in both neuronal cell biology and cryoET. Also, Satish is on the job market!
November 12, 2025 at 5:35 PM
Reposted by Álvaro López Codina
Reposted by Álvaro López Codina
New Title Alert: BoltzDesign- is a molecular design tool powered by the Boltz model for designing protein-protein interactions and biomolecular complexes.

Learn more here: buff.ly/P9BTlAZ

#SBGridSoftware #SBGrid
GitHub - yehlincho/BoltzDesign1
Contribute to yehlincho/BoltzDesign1 development by creating an account on GitHub.
buff.ly
November 12, 2025 at 6:03 PM
Reposted by Álvaro López Codina
I’m very happy to share Zhong Han’s beautiful work on the biochemical function of Senataxin, encoded by a gene that is mutated in rare and early-disabling neurodegenerative diseases. Turns out it rescues backtracked RNA polymerase II during early transcription! www.sciencedirect.com/science/arti...
A role for human senataxin in contending with pausing and backtracking during transcript elongation
Senataxin (SETX) regulates RNA polymerase II (RNAPII) transcription and helps maintain genome stability, at least partly by suppressing R-loops. Howev…
www.sciencedirect.com
November 12, 2025 at 5:36 PM
Reposted by Álvaro López Codina
Reposted by Álvaro López Codina
Proteome-wide in silico screening for human protein-protein interactions https://www.biorxiv.org/content/10.1101/2025.11.10.687652v1
November 12, 2025 at 7:47 PM