IUCrJ
@iucrj.iucr.org
IUCrJ is a leading open-access journal published by the IUCr.
https://journals.iucr.org/m/
https://journals.iucr.org/m/
Chao-Sheng Chen et al.: Structure of the bacteriophage PhiKZ non-virion RNA polymerase bound to a p119L open promoter analogue ##CryoEM@imperialcollege@telavivuni1...##IUCrhttps://journals.iucr.org/paper?S2052252525009273
Structure of the bacteriophage PhiKZ non-virion RNA polymerase bound to a p119L open promoter analogue
Bacteriophage ΦKZ is a massive bacterial virus with potential as a therapy for Pseudomonas aeruginosa, which forms a bacteriophage nucleus in infected cells to exclude the host immune system, and transcribes its genes with its own, non-canonical multi-subunit RNA polymerase. The structure of this polymerase in the process of binding an analogue of its cognate promoter is resolved, revealing an unanticipated method of promoter consensus recognition involving the β-like, rather than the σ-factor-like subunit.
journals.iucr.org
November 11, 2025 at 1:00 AM
Chao-Sheng Chen et al.: Structure of the bacteriophage PhiKZ non-virion RNA polymerase bound to a p119L open promoter analogue ##CryoEM@imperialcollege@telavivuni1...##IUCrhttps://journals.iucr.org/paper?S2052252525009273
Juyeon Lee et al.: Structural insights into the antiviral efficacy of AG7404 against human rhinovirus 3C proteases ##3CProteases##Rhinovirus##AntiviralAgents@snunow...##IUCrhttps://journals.iucr.org/paper?S2052252525008929
Structural insights into the antiviral efficacy of AG7404 against human rhinovirus 3C proteases
This study presents the crystal structure of human rhinovirus (hRV)-B14 3C protease bound to AG7404, a broad-spectrum antiviral inhibitor, at a resolution of 2.11 Å. Antiviral assays and in silico studies provide structural insights into AG7404's efficacy and binding mechanism against hRV-B14, hRV-A16 and hRV-A21 3C proteases.
journals.iucr.org
November 11, 2025 at 1:00 AM
Juyeon Lee et al.: Structural insights into the antiviral efficacy of AG7404 against human rhinovirus 3C proteases ##3CProteases##Rhinovirus##AntiviralAgents@snunow...##IUCrhttps://journals.iucr.org/paper?S2052252525008929
Yuhei Sasaki et al.: Broadband high-resolution X-ray ptychography system spanning tender to hard X-ray regimes @TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR...##IUCrhttps://journals.iucr.org/paper?S2052252525009236
Broadband high-resolution X-ray ptychography system spanning tender to hard X-ray regimes
An advanced X-ray ptychography system has been developed that facilitates nanoscale imaging across both tender and hard X-ray regions using a single optical setup.
journals.iucr.org
November 7, 2025 at 1:00 AM
Yuhei Sasaki et al.: Broadband high-resolution X-ray ptychography system spanning tender to hard X-ray regimes @TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR@TohokuUniPR...##IUCrhttps://journals.iucr.org/paper?S2052252525009236
The November issue of IUCrJ is now available at tinyurl.com/2te2h8te, and the IUCr's focused issue on Quantum Crystallography is now complete at
tinyurl.com/yc7hh8f4. Enjoy!
tinyurl.com/yc7hh8f4. Enjoy!
October 31, 2025 at 1:24 PM
The November issue of IUCrJ is now available at tinyurl.com/2te2h8te, and the IUCr's focused issue on Quantum Crystallography is now complete at
tinyurl.com/yc7hh8f4. Enjoy!
tinyurl.com/yc7hh8f4. Enjoy!
Lauren Alexandrescu et al.: `Mix-it-up': accessible time-resolved cryo-EM on the millisecond timescale ##ElectronMicroscopy##CryoEM##TimeResolvedStudies... ##IUCrhttps://journals.iucr.org/paper?S2052252525008838
`Mix-it-up': accessible time-resolved cryo-EM on the millisecond timescale
The development of methods for low-cost time-resolved cryo-EM using an on-grid mixing strategy is described.
journals.iucr.org
October 28, 2025 at 1:00 AM
Lauren Alexandrescu et al.: `Mix-it-up': accessible time-resolved cryo-EM on the millisecond timescale ##ElectronMicroscopy##CryoEM##TimeResolvedStudies... ##IUCrhttps://journals.iucr.org/paper?S2052252525008838
Kulik and Dominiak: Protein electrostatic potential Fourier maps calculated using the transferable aspherical atom model and the independent atom model across resolutions ##MicrocrystalElectronDiffraction... ##IUCrhttps://journals.iucr.org/paper?S2052252525008383
Protein electrostatic potential Fourier maps calculated using the transferable aspherical atom model and the independent atom model across resolutions
Electrostatic potential maps of proteins are calculated at various resolutions using the transferable aspherical atom model (TAAM) to determine the relations between the electrostatic potential and resolution for different atom types.
journals.iucr.org
October 18, 2025 at 12:00 AM
Kulik and Dominiak: Protein electrostatic potential Fourier maps calculated using the transferable aspherical atom model and the independent atom model across resolutions ##MicrocrystalElectronDiffraction... ##IUCrhttps://journals.iucr.org/paper?S2052252525008383
Alexander Gorel et al.: Testing the limits: serial crystallography using unpatterned fixed targets ##SerialCrystallography##SSX##SFX... ##IUCrhttps://journals.iucr.org/paper?S2052252525008371
Testing the limits: serial crystallography using unpatterned fixed targets
The influence of the X-ray step size on radiation damage occurring in serial data collection from a metalloprotein using sheet-on-sheet fixed-target chips was investigated at fourth-generation synchrotron and XFEL beamlines.
journals.iucr.org
October 14, 2025 at 12:00 AM
Alexander Gorel et al.: Testing the limits: serial crystallography using unpatterned fixed targets ##SerialCrystallography##SSX##SFX... ##IUCrhttps://journals.iucr.org/paper?S2052252525008371
Samuel Gallego-Parra et al.: Unveiling the ambient-condition structure of Sr2FeIrO6: a triclinic phase through synchrotron-based X-ray techniques and high pressure ##StructuralCharacterization@UPV@UV_EG@unican...##IUCrhttps://journals.iucr.org/paper?S2052252525008218
Unveiling the ambient-condition structure of Sr2FeIrO6: a triclinic phase through synchrotron-based X-ray techniques and high pressure
The room-temperature structure of Sr2FeIrO6, a double perovskite with notable magnetic and structural properties, has been debated extensively. Our high-resolution and high-pressure synchrotron-based powder X-ray diffraction findings provide compelling evidence to reconcile these divergent positions, laying groundwork for future research.
journals.iucr.org
October 14, 2025 at 12:00 AM
Samuel Gallego-Parra et al.: Unveiling the ambient-condition structure of Sr2FeIrO6: a triclinic phase through synchrotron-based X-ray techniques and high pressure ##StructuralCharacterization@UPV@UV_EG@unican...##IUCrhttps://journals.iucr.org/paper?S2052252525008218
Berthold Stöger et al.: New structural insights into Fe2P2O7 – unravelling an unresolved dispute and three reversible phase transitions @univienna@unibonn@tuvienna...##IUCrhttps://journals.iucr.org/paper?S2052252525007547
New structural insights into Fe2P2O7 – unravelling an unresolved dispute and three reversible phase transitions
Thortveitite-related Fe2P2O7 shows three reversible phase transitions and has an incommensurately modulated crystal structure at room temperature.
journals.iucr.org
October 10, 2025 at 12:01 AM
Berthold Stöger et al.: New structural insights into Fe2P2O7 – unravelling an unresolved dispute and three reversible phase transitions @univienna@unibonn@tuvienna...##IUCrhttps://journals.iucr.org/paper?S2052252525007547
The September issue of IUCrJ is now available at tinyurl.com/5n7mdan4
September 2, 2025 at 2:02 PM
The September issue of IUCrJ is now available at tinyurl.com/5n7mdan4
Eliška Zmeškalová et al.: Unravelling venetoclax solvate behaviour: insights from crystal structures and computational surface analysis ##Venetoclax##Solvates##CrystalEngineering@vscht...##IUCrhttps://journals.iucr.org/paper?S2052252525006785
Unravelling venetoclax solvate behaviour: insights from crystal structures and computational surface analysis
Seven venetoclax solvates were structurally characterized and studied for their desolvation behaviour, leading to the identification of two solvent-free polymorphs. Advanced crystallographic and computational analyses, including Solvate Analyser, CSD-Particle, FTIR and solid-state NMR, revealed key factors governing solvate stability and transformation. Notably, the acetone solvate exhibited exceptional stability and the desolvated forms retained the molecular arrangement of their parent solvates.
journals.iucr.org
August 29, 2025 at 12:00 AM
Eliška Zmeškalová et al.: Unravelling venetoclax solvate behaviour: insights from crystal structures and computational surface analysis ##Venetoclax##Solvates##CrystalEngineering@vscht...##IUCrhttps://journals.iucr.org/paper?S2052252525006785
Michihiro Suga: Illuminating DNA repair in action: structural insights into a photocaged glycosylase complex ##XRayFreeElectronLasers##XFELs##TimeResolvedCrystallography@okayama_uni...##IUCrhttps://journals.iucr.org/paper?S2052252525007353
Illuminating DNA repair in action: structural insights into a photocaged glycosylase complex
Structural analysis of the co-crystal between human DNA glycosylase hOGG1 and a light-sensitive substrate analog highlights its utility as a platform for real-time observation of catalytic dynamics.
journals.iucr.org
August 29, 2025 at 12:00 AM
Michihiro Suga: Illuminating DNA repair in action: structural insights into a photocaged glycosylase complex ##XRayFreeElectronLasers##XFELs##TimeResolvedCrystallography@okayama_uni...##IUCrhttps://journals.iucr.org/paper?S2052252525007353
Peter Smyth et al.: Time-resolved serial synchrotron and serial femtosecond crystallography of heme proteins using photocaged nitric oxide ##TimeResolvedXRayCrystallography##SerialCrystallography@Uni_of_Essex...##IUCrhttps://journals.iucr.org/paper?S2052252525006645
Time-resolved serial synchrotron and serial femtosecond crystallography of heme proteins using photocaged nitric oxide
We demonstrate the application of a nitric oxide releasing photocage system for time-resolved serial crystallography studies of two heme containing proteins using a fixed target sample delivery system. Optimal parameters for successful photocage activation and nitric oxide release are explored.
journals.iucr.org
August 23, 2025 at 12:00 AM
Peter Smyth et al.: Time-resolved serial synchrotron and serial femtosecond crystallography of heme proteins using photocaged nitric oxide ##TimeResolvedXRayCrystallography##SerialCrystallography@Uni_of_Essex...##IUCrhttps://journals.iucr.org/paper?S2052252525006645
Thorsten B. Blum et al.: Subtomogram averages of mitochondrial ATP synthase dimers from plants show a conserved extra density at the peripheral stalk ##ATPSynthase##CryoElectronTomography##SubtomogramAveraging... ##IUCrhttps://journals.iucr.org/paper?S2052252525006220
Subtomogram averages of mitochondrial ATP synthase dimers from plants show a conserved extra density at the peripheral stalk
Electron cryo-tomography of ATP synthase dimers in plant mitochondria indicates a wide dimer angle and a plant-specific subunit in the peripheral stalk.
journals.iucr.org
August 22, 2025 at 12:01 AM
Thorsten B. Blum et al.: Subtomogram averages of mitochondrial ATP synthase dimers from plants show a conserved extra density at the peripheral stalk ##ATPSynthase##CryoElectronTomography##SubtomogramAveraging... ##IUCrhttps://journals.iucr.org/paper?S2052252525006220
Jack Stephens et al.: Discovery of an energy-dependent many-body process in the Kβ spectrum of manganese metal using extended-range high-energy-resolution fluorescence detection wi... ##IUCrhttps://journals.iucr.org/paper?S2052252525005573
Discovery of an energy-dependent many-body process in the Kβ spectrum of manganese metal using extended-range high-energy-resolution fluorescence detection with advanced structural insights from principal component analysis
A new satellite is discovered in the manganese Kβ spectrum using extended-range high-energy-resolution fluorescence detection. Advanced insights on its structure and evolution are extracted with principal component analysis.
journals.iucr.org
August 22, 2025 at 12:01 AM
Jack Stephens et al.: Discovery of an energy-dependent many-body process in the Kβ spectrum of manganese metal using extended-range high-energy-resolution fluorescence detection wi... ##IUCrhttps://journals.iucr.org/paper?S2052252525005573
Patrick Hautle et al.: Highlighting radical sites through polarized neutron scattering from AFP-modulated polarized protons ##PolarisedNeutronScattering##DynamicPolarisedProtons##AdiabaticFastPassage... ##IUCrhttps://journals.iucr.org/paper?S2052252525005871
Highlighting radical sites through polarized neutron scattering from AFP-modulated polarized protons
Selective nuclear spin reversal by the method of adiabatic fast passage is a way to order a system of dynamically polarized nuclei. Using polarized neutron scattering, it increases the visibility of sources and sinks of proton polarization in radical proteins. Notably, Tyr369 has been confirmed as a potential radical site in bovine liver catalase.
journals.iucr.org
August 22, 2025 at 12:01 AM
Patrick Hautle et al.: Highlighting radical sites through polarized neutron scattering from AFP-modulated polarized protons ##PolarisedNeutronScattering##DynamicPolarisedProtons##AdiabaticFastPassage... ##IUCrhttps://journals.iucr.org/paper?S2052252525005871
Wei, Li, Shi and He: Low-energy tetrahedral networks for carbon and silicon from (2+1)-regular bipartite-like graphs ##4CoordinateNetworks##RandomGroupAndGraphTheory##SuperhardCarbon... ##IUCrhttps://journals.iucr.org/paper?S2052252525005810
Low-energy tetrahedral networks for carbon and silicon from (2+1)-regular bipartite-like graphs
This study identifies carbon crystal structures as 4-degree quotient graphs and proposes a novel approach for generating 3D 4-coordinate networks using 2D (2+1)-regular bipartite-like graphs. Through a random group and graph theory (RG2) method, we discover 509 new structures, including two low-energy phases (Pbam48 and Pbam40) that exhibit exceptional stability and potential applications as superhard carbon and quasi-direct band gap silicon materials in mechanical processing and solar photovoltaic technologies.
journals.iucr.org
July 30, 2025 at 12:01 AM
Wei, Li, Shi and He: Low-energy tetrahedral networks for carbon and silicon from (2+1)-regular bipartite-like graphs ##4CoordinateNetworks##RandomGroupAndGraphTheory##SuperhardCarbon... ##IUCrhttps://journals.iucr.org/paper?S2052252525005810
Y. Ishii: First high-resolution synchrotron X-ray study of icosahedrite, a natural quasicrystal from the Khatyrka meteorite ##Quasicrystals... ##IUCrhttps://journals.iucr.org/paper?S2052252525006141
First high-resolution synchrotron X-ray study of icosahedrite, a natural quasicrystal from the Khatyrka meteorite
Quasicrystals are long-range-ordered materials with rotational symmetry incompatible with periodicity. Takakura et al. [(2025). IUCrJ 12, 435–443] present a study of a single grain of icosahedrite, the first natural icosahedral quasicrystal, which was found in a meteorite in 2009. Through detailed analysis of the diffraction peaks, they conclude that natural AlCuFe is an icosahedral quasicrystal superimposed by a phasonic modulation along the fivefold directions, which is similar to that observed in the synthetic quasicrystal. Based on knowledge of the synthesis and phase stability of icosahedral AlCuFe, they discuss the formation of icosahedrite in the meteorite.
journals.iucr.org
July 23, 2025 at 12:00 AM
Y. Ishii: First high-resolution synchrotron X-ray study of icosahedrite, a natural quasicrystal from the Khatyrka meteorite ##Quasicrystals... ##IUCrhttps://journals.iucr.org/paper?S2052252525006141
Adam F. Sapnik et al.: High-quality ultra-fast total scattering and pair distribution function data using an X-ray free-electron laser @unimib@ucl@UniFAU@UniFreiburg@QUBelfast@koebenhavns_uni@UniofOxford...##IUCrhttps://journals.iucr.org/paper?S205225252500538X
High-quality ultra-fast total scattering and pair distribution function data using an X-ray free-electron laser
This work demonstrates that high-quality ultra-fast total scattering data and pair distribution function data can be obtained from a single ∼30 fs pulse at the European XFEL, achieving a record Q range of up to 16.6 Å−1. These results establish XFELs as powerful tools for probing atomic scale structures on ultra-fast timescales, opening new opportunities for studying dynamic processes in disordered and complex materials.
journals.iucr.org
July 23, 2025 at 12:00 AM
Adam F. Sapnik et al.: High-quality ultra-fast total scattering and pair distribution function data using an X-ray free-electron laser @unimib@ucl@UniFAU@UniFreiburg@QUBelfast@koebenhavns_uni@UniofOxford...##IUCrhttps://journals.iucr.org/paper?S205225252500538X
We're pleased to announce that Professor Len MacGillivray has been appointed as the new Main Editor for the Chemistry and Crystal Engineering section of IUCrJ @usherbrooke.bsky.social
July 15, 2025 at 9:22 AM
We're pleased to announce that Professor Len MacGillivray has been appointed as the new Main Editor for the Chemistry and Crystal Engineering section of IUCrJ @usherbrooke.bsky.social
Tomoki Imura et al.: Revisiting the co-crystal structure of a DNA glycosylase with photocaged substrate: a suitable time-resolved crystallography target? ##DNARepair##PhotocagedSubstrateAnaloga##HOgg1@osaka_univ_e...##IUCrhttps://journals.iucr.org/paper?S2052252525006062
Revisiting the co-crystal structure of a DNA glycosylase with photocaged substrate: a suitable time-resolved crystallography target?
Engineered in crystallo photosensitivity in a DNA-repair enzyme is carefully assessed for its suitability as a target for time-resolved crystallographic studies.
journals.iucr.org
July 15, 2025 at 12:01 AM
Tomoki Imura et al.: Revisiting the co-crystal structure of a DNA glycosylase with photocaged substrate: a suitable time-resolved crystallography target? ##DNARepair##PhotocagedSubstrateAnaloga##HOgg1@osaka_univ_e...##IUCrhttps://journals.iucr.org/paper?S2052252525006062
The July issue of IUCrJ is out now tinyurl.com/2u7uanhy including more papers for the IUCr's cross-journal focused issue on Quantum Crystallography tinyurl.com/yc7hh8f4
July 4, 2025 at 10:23 AM
The July issue of IUCrJ is out now tinyurl.com/2u7uanhy including more papers for the IUCr's cross-journal focused issue on Quantum Crystallography tinyurl.com/yc7hh8f4
Akinobu Niozu: Femtosecond X-rays illuminate disordered states during the early stages of crystallization ##Crystallization##XRayFreeElectronLasers##CorrelatedFluctuations@Hiroshima_Univ...##IUCrhttps://journals.iucr.org/paper?S2052252525005706
Femtosecond X-rays illuminate disordered states during the early stages of crystallization
Crystallization is a fundamental non-equilibrium process in materials science, yet its early transient states remain difficult to probe experimentally. Möller et al. [(2025). IUCrJ 12, 462–471] use femtosecond X-ray scattering and X-ray cross-correlation analysis to reveal the structural evolution of defect-containing crystals forming in a supercooled noble-gas liquid.
journals.iucr.org
July 2, 2025 at 12:00 AM
Akinobu Niozu: Femtosecond X-rays illuminate disordered states during the early stages of crystallization ##Crystallization##XRayFreeElectronLasers##CorrelatedFluctuations@Hiroshima_Univ...##IUCrhttps://journals.iucr.org/paper?S2052252525005706
Johannes Elferich et al.: In situ high-resolution cryo-EM reconstructions from CEMOVIS ##ElectronTomography##IntegrativeStructuralBiology##Imaging@unibern...##IUCrhttps://journals.iucr.org/paper?S2052252525005196
In situ high-resolution cryo-EM reconstructions from CEMOVIS
Vitreous sectioning (CEMOVIS) is an alternative to FIB milling for generating thin samples suitable for cryo-EM imaging. We show that CEMOVIS samples preserve the high-resolution structural details of macromolecular complexes such as the 60S ribosome, despite the visible macroscopic damage visible in the samples.
journals.iucr.org
June 25, 2025 at 12:00 AM
Johannes Elferich et al.: In situ high-resolution cryo-EM reconstructions from CEMOVIS ##ElectronTomography##IntegrativeStructuralBiology##Imaging@unibern...##IUCrhttps://journals.iucr.org/paper?S2052252525005196
Svetlana A. Korban et al.: Using multiple computer-predicted structures as molecular replacement models: application to the antiviral mini-protein LCB2 @lifeatpurdue...##IUCrhttps://journals.iucr.org/paper?S2052252525005123
Using multiple computer-predicted structures as molecular replacement models: application to the antiviral mini-protein LCB2
A set of crystallographic structures has been obtained for the small antiviral protein LCB2 using molecular replacement models from six different structure-prediction programs. This set of structures can be interpreted as a multiconformer ensemble, improving quality metrics and offering an interesting insight into side-chain dynamics.
journals.iucr.org
June 24, 2025 at 12:01 AM
Svetlana A. Korban et al.: Using multiple computer-predicted structures as molecular replacement models: application to the antiviral mini-protein LCB2 @lifeatpurdue...##IUCrhttps://journals.iucr.org/paper?S2052252525005123