Omar Kana
omar-kana.bsky.social
Omar Kana
@omar-kana.bsky.social
Spatial transcriptomics scientist at the Allen Institute working on Alzheimer's disease. Love biology, statistics, and a good book. All views expressed here represent my own.
Reposted by Omar Kana
Adult human brains have between 86-100 billion neurons and every single one is unique - like snowflakes! ❄️

🧠📈 In this 3D rendering by our #ElectronMicroscopy team, we see 3 different shapes. Can you name all of them?

#BrainAwarenessWeek @danafoundation.bsky.social
March 12, 2025 at 6:06 PM
Reposted by Omar Kana
Thanks for showing up to #StandUpForScience, Seattle!

Huge thanks to the grad students and early career scientists @sufsseattle.bsky.social and @standupforscience.bsky.social who organized the events here and around the world today. 💙
March 8, 2025 at 12:29 AM
Reposted by Omar Kana
SO MANY STAND UP FOR SCIENCE EVENTS TO CHOOSE FROM—153 and COUNTING!

To get more information on our local events and to register your own, head to www.standupforscience2025.org/local-event-information/ ☀️⬇️🌎
March 6, 2025 at 7:14 PM
Reposted by Omar Kana
Science Matters. 🔬
For 80 years, science has been a north star for the U.S. In 1945, Vannevar Bush’s report Science, The Endless Frontier called for bold government investment in research transforming our health, economy, quality of life. Science is not zero-sum—it creates value and better lives.
March 7, 2025 at 5:25 AM
Reposted by Omar Kana
We are experiencing an assault on science unparalleled by anything I’ve seen in my life. It’s not one issue or another anymore, the entire institution is under attack by the most powerful individuals in the country.

This Friday, where will you be?

standupforscience2025.org
March 2, 2025 at 4:27 PM
Reposted by Omar Kana
Constrained roads to complex brains -
Neural development and brain circuit evolution converged in birds and mammals www.science.org/doi/10.1126/...
Constrained roads to complex brains
Neural development and brain circuit evolution converged in birds and mammals
www.science.org
February 14, 2025 at 6:20 PM
Reposted by Omar Kana
I hope you will all join me in expressing your thanks to the NIH and NSF staff who are working in an impossibly difficult and chaotic environment to keep science going in our country.
February 3, 2025 at 1:45 AM
Reposted by Omar Kana
Join us March 11 for our 2025 OpenScope Data Release webinar! 🔭🧠

Learn about the experimental designs of the 2024 projects incl. studies related to psychedelics and visual perception.

Register to RSVP or be notified when the recording is live: alleninstitute.org/events/2025-...

🧠📈
2025 OpenScope Data-Release Webinar
Learn about OpenScope project experimental designs from 2024 as we prepare to release the collected data sets to the community.
alleninstitute.org
January 23, 2025 at 11:05 PM
Reposted by Omar Kana
New book "Explanation in Biology" with Cambridge University Press is out & open access!

Covers (1) causal explanation & (2) non-causal/mathematical explanation in life sciences--bio, neuro, etc 🌿🧬🧠

Introduction to philosophical work on scientific explanation!

www.cambridge.org/core/element...
January 21, 2025 at 3:23 PM
Reposted by Omar Kana
Inferring context-dependent computations through linear approximations of prefrontal cortex dynamics
www.science.org/doi/10.1126/...
#neuroscience
Inferring context-dependent computations through linear approximations of prefrontal cortex dynamics
PFC neural responses during contextual decision-making are consistent with both recurrent and input-driven flexible computations.
www.science.org
January 3, 2025 at 7:00 PM
Reposted by Omar Kana
A New Year's rant, for 2025 😊:
January 3, 2025 at 6:17 PM
Reposted by Omar Kana
This looks like amazing new work from my colleagues at Stanford demonstrating the opponent interactions of DA and 5HT in reinforcement learning.
Opponent control of reinforcement by striatal dopamine and serotonin - Nature
Nature - Opponent control of reinforcement by striatal dopamine and serotonin
www.nature.com
January 2, 2025 at 3:44 PM
Reposted by Omar Kana
Striatal stimulation enhances cognitive control and evidence processing in rodents and humans
www.science.org/doi/10.1126/...
#neuroscience
Striatal stimulation enhances cognitive control and evidence processing in rodents and humans
Developing an animal model of human brain stimulation therapy reveals that striatal DBS enhances the brain’s ability to process conflicting evidence.
www.science.org
January 2, 2025 at 12:42 PM
Reposted by Omar Kana
Disturbing review paper; our environment and body tissues are now thoroughly impregnated with micro-plastic particles. Doesn't seem ideal. www.science.org/doi/10.1126/...
Twenty years of microplastic pollution research—what have we learned?
Twenty years after the first publication that used the term microplastic, we review current understanding, refine definitions, and consider future prospects. Microplastics arise from multiple sources,...
www.science.org
December 29, 2024 at 6:05 PM
I am about two years late to the party, but Pantheon by AMC is probably one of the best sci-fi shows I have ever seen. Interesting themes on humanity and a very human take on the simulation hypothesis. The ending of the second season is still echoing in my head.
December 25, 2024 at 9:35 PM
Reposted by Omar Kana
"you'll be visited by three spirits"

The spirits:
December 24, 2024 at 6:57 PM
Reposted by Omar Kana
“The human prefrontal cortex alone contains enough neuronal hardware to run 5000 [fruit]flies.”

Meanwhile mine can’t even keep me from shitposting on Bluesky after a couple of beers.

Cool paper from @mameister4.bsky.social

authors.elsevier.com/a/1kHVa3BtfH...
December 19, 2024 at 12:18 AM
Reposted by Omar Kana
"The development of new tools for manipulating genomes frees us from the limited phenotypes that evolution has produced, allowing us to generate new cell phenotypes and explore the boundaries of cellular novelty." So interesting.
www.cell.com/trends/genet...
On the evolutionary developmental biology of the cell
Organisms are complex assemblages of cells, cells that produce light, shoot harpoons, and secrete glue. Therefore, identifying the mechanisms that generate novelty at the level of the individual cell is essential for understanding how multicellular life evolves. For decades, the field of evolutionary developmental biology (Evo-Devo) has been developing a framework for connecting genetic variation that arises during embryonic development to the emergence of diverse adult forms. With increasing access to new single cell ‘omics technologies and an array of techniques for manipulating gene expression, we can now extend these inquiries inward to the level of the individual cell. In this opinion, I argue that applying an Evo-Devo framework to single cells makes it possible to explore the natural history of cells, where this was once only possible at the organismal level.
www.cell.com
December 18, 2024 at 6:51 PM
Reposted by Omar Kana
A bunch of headlines have been proclaiming that intermittent fasting is causing hair loss.

As a bald man who likes the diet, I found this fascinating. So I looked into the data.

Spoiler - it's not very convincing.

gidmk.substack.com/p/intermitte...
Intermittent Fasting Probably Isn't Making You Bald
Why recent headlines aren't as convincing as they might seem.
gidmk.substack.com
December 16, 2024 at 9:52 PM
Reposted by Omar Kana
NiCo is out! Our new algorithm for spatial transcriptomics data analysis predicts the crosstalk of cell types co-localized in tissue niches and sheds light on signalling mediators and downstream effects of cell-cell interactions by inferring covarying gene programs.

www.nature.com/articles/s41...
December 6, 2024 at 12:00 PM
#spatial_transcriptomics #napari #spatialdata
A napari-spatialdata is a bit clunkier than I'd like, but I am slowly getting the hang of it.
December 9, 2024 at 11:55 PM
Reposted by Omar Kana
Entropy is one of those formulas that many of us learn, swallow whole, and even use regularly without really understanding.

(E.g., where does that “log” come from? Are there other possible formulas?)

Yet there's an intuitive & almost inevitable way to arrive at this expression.
December 9, 2024 at 10:44 PM
Reposted by Omar Kana
I’m not a Syrian refugee anymore. I’m Syrian. Just Syrian.
December 8, 2024 at 4:18 AM