Filip Husnik
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filiphusnik.bsky.social
Filip Husnik
@filiphusnik.bsky.social
Assistant Professor at the Okinawa Institute of Science and Technology (OIST) 🇯🇵 previously 🇨🇦🇺🇸🇨🇿
evolution | cell biology | symbiosis | genomics | microbiology | marine science
https://www.oist.jp/research/research-units/ecbsu/
Pinned
Pretty excited to share our new preprint!
Non-photosynthetic Plastid Replacement by a Primary Plastid in the Making
www.biorxiv.org/content/10.1...
Reposted by Filip Husnik
✨ A study in nature.com from our Faculty at @unikarlova.cuni.cz reveals Solarion arienae, a rare #protist forming a newly identified eukaryotic supersroup Disparia. A unique window into early #eukaryotic cell #evolution. 🌍🔬👏

www.nature.com/articles/s41...
November 19, 2025 at 4:03 PM
Reposted by Filip Husnik
Daily reminder that you are a better writer and researcher than any generative AI platform around. Your skills are worthy and it takes far more time to clean-up and fact-check the mess some chatbot spits out than to just do it yourself 😘
November 17, 2025 at 10:22 PM
Reposted by Filip Husnik
Diving through the purple sulfur bacteria layer of Fayetteville Green Lake with our ROV last month. This is the most intense density of PSB that I've seen in many years!
November 8, 2025 at 6:30 PM
Reposted by Filip Husnik
.... 2nd work

2) Parallel #evolution of #Bacteroidota as Long-Term #endosymbionts of #insects

by Jinyeong Choi, Cong Liu, Pradeep Palanichamy, Yumiko Masukagami, Hirotaka Tanaka, Takumasa Kondo, Matthew E. Gruwell, @filiphusnik.bsky.social

doi.org/10.1101/2025...

#SymbioSky @oistedu.bsky.social
Parallel Evolution of Bacteroidota as Long-Term Endosymbionts of Insects
Symbiotic relationships transform diverse aspects of both symbiont and host biology. The most visible changes include a massive reduction of the endosymbiont genome and the development of novel host o...
doi.org
November 5, 2025 at 9:39 AM
Reposted by Filip Husnik
It is a collaboration between my lab (Uppsala U) and the labs of @dudinlab.bsky.social (Geneva U) and @filiphusnik.bsky.social (OIST). More info and how to apply here:
uu.varbi.com/en/what:job/.... (The use of AI for writing the motivation letter is discouraged and will be regarded unfavourably) 2/2
PhD student in systematic biology
The Department of Organismal Biology teaches and explores the evolution, development and function on the organismal level. For more information see Department of Organismal Biology - Uppsala Universit
uu.varbi.com
November 12, 2025 at 9:50 AM
Reposted by Filip Husnik
We are looking for a PhD student to work on an exciting plastid endosymbiosis in microbial eukaryotes. This position involves sampling, exciting microscopy such as CARDFISH, ExM and FIBSEM, single-cell transcriptomics and more. #protistsonsky 1/2
November 12, 2025 at 9:50 AM
Reposted by Filip Husnik
We have wondered what a complex archaeal cell might look like ever since 2014. It’s been a long road (and the journey is far from over), but it’s a good time to pause for breath and look. These Asgard archaeal cells are a surprise! And that is the joy of being a cell biologist.
November 7, 2025 at 11:02 AM
Reposted by Filip Husnik
Exciting day for the lab: our 1rst paper is officially out in @currentbiology.bsky.social 🥳 Wonderful collaboration wt @gautamdey.bsky.social showing how Cryo-ExM achieves consistent immunostaining in diverse diatoms, from the lab and the natural environment 1/n
#ProtistsOnSky
tinyurl.com/2zxaund7
October 31, 2025 at 3:27 PM
Reposted by Filip Husnik
🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky

www.cell.com/cell/fulltex...
October 31, 2025 at 2:42 PM
Reposted by Filip Husnik
Independent researcher fellowships (non-tenure track) at OIST, with a focus on broadly defined theory www.oist.jp/research/bur...
Buribushi Fellowship
www.oist.jp
October 30, 2025 at 1:38 AM
Reposted by Filip Husnik
🧬 Registration is open for the Phylogenomics Workshop in Český Krumlov!
Fantastic training opportunity for anyone working with genomic data and evolutionary questions.
Highly recommended - amazing course, great community, and a fantastic setting!
October 30, 2025 at 4:41 PM
Reposted by Filip Husnik
We’re back with the next DinoSphere Online Seminar!

Join us on Nov 4th, we're hosting:

Edmée Royen (ULiège) - Symbiodinium

Nicolas dos Santos Pacheco (Cambridge) - Perkinsids

📅 Tue, Nov 4 - 4 PM CET/3 PM GMT

💻 Zoom link: sites.google.com/view/dinosphere

Please spread the word!
#protistonsky
October 28, 2025 at 3:29 PM
Reposted by Filip Husnik
Version 5.1.1 of the PR2 database has been released.

The major novelty is the inclusion of the recently published eKOI database (coi gene- doi.org/10.1093/data...) in the web interface. The 18S rRNA database is not changed so you can use 5.1.0 or 5.1.1 for metabarcode annotations
A novel taxonomic database for eukaryotic mitochondrial cytochrome oxidase subunit I gene (eKOI), with a focus on protists diversity
Abstract. Metabarcoding has emerged as a robust method for assessing biodiversity patterns by retrieving environmental DNA directly from ecosystems. While
doi.org
October 28, 2025 at 8:59 AM
Reposted by Filip Husnik
Do you want to do a Masters in Evolutionary Biology? The call for applying to the MEME program is now open! MEME is a fantastic 2-year MSc between four European Universities on all areas of Evolutionary Biology. Apply and study in Sweden/France/the Netherlands/Germany/USA/Switzerland! www.evobio.eu
October 24, 2025 at 9:04 AM
Reposted by Filip Husnik
“Cellular Olympics” our catalog of freeky ultra fast cellular superhero’s is freely available “Ann Rev of microbiology”

www.annualreviews.org/content/jour...

This is a compilation of world’s fastest single cell organisms - enjoy this buffet of rare delightful protists with mind bending speeds. 🧪
October 24, 2025 at 10:57 AM
Reposted by Filip Husnik
Reposted by Filip Husnik
I am defending my dissertation titled "Ecology and evolution of anaerobic ciliate methanogen symbioses in marine oxygen depleted environments" on Nov 6 at 9:30 am EST!

Message me for the zoom link if you are interested in joining! (Or join in person at beautiful URI GSO)
#ProtistsOnSky #SymbioSky
October 20, 2025 at 5:04 PM
Reposted by Filip Husnik
Congrats @laurentformery.bsky.social

Often people ask why we chose to work on a certain problems and a simple answer for us in this case - it’s beautiful. If you want to learn the magic of building crystalline « gems » inside the body - see our latest paper at www.biorxiv.org/content/10.1...
October 18, 2025 at 8:18 PM
Reposted by Filip Husnik
Our study on the first rhodopsin channels known to respond to UV light is now published in PNAS! And they come from our favourite protists, apusomonads! #protistonsky

www.pnas.org/doi/full/10....
October 14, 2025 at 3:44 PM
Reposted by Filip Husnik
Excited to share our new work on nanopore metabarcoding — showing how it can be used for protists and combined with short reads!
Led by my PhD student Małgorzata Chwalińska, with our team at @ibe-warszawa.bsky.social and @fabnot.bsky.social & Sarah Romac at @sbroscoff.bsky.social
#ProtistsOnSky
"Want to start using Nanopore technology to research protistan diversity? Check out our paper introducing a pipeline for creating OTUs from Nanopore metabarcodes — bridging the gap between short- and long-read metabarcoding." - Anna Karnkowska

doi.org/10.3897/mbmg...
October 14, 2025 at 2:53 PM
Reposted by Filip Husnik
Pretty excited to share our new preprint!
Non-photosynthetic Plastid Replacement by a Primary Plastid in the Making
www.biorxiv.org/content/10.1...
October 10, 2025 at 3:34 AM
Reposted by Filip Husnik
We're excited to share with everyone a preprint of our manuscript that resolves the cellular origins of the symbiosome in cnidarian-algal symbiosis through proteomics of the symbiosome, RNAi, and CRISPR/Cas9 experiments. ⬇️
www.biorxiv.org/content/10.1...

Read on below!

1/12 🧵
October 13, 2025 at 10:00 PM