ssolo.bsky.social
@ssolo.bsky.social
Physicist turned Evolutionary Biologist, Model-Based Evolutionary Genomics Research Unit @oistedu.bsky.social phylogenomics, HGT, somatic evolution (http://ssolo.bsky.social)
Pinned
ssolo.bsky.social
@ssolo.bsky.social
· Apr 4
Dating Bacteria is hard due to the lack of maxima. Assuming aerobes likely postdated the GOE gave us better resolved ages, but also surprised us, but not Dr Dayhoff, showing O2 use predated its atmospheric rise by 900 Mys and helped oxygenic photosynthesis to evolve. www.science.org/doi/10.1126/...
Reposted by ssolo.bsky.social
Applications are now open for the Buribushi Fellowship 2026!
OIST is offering a unique opportunity for early-career, theory-focused researchers to lead their own projects with full funding support.
Learn more & Apply by November 30th: https://www.oist.jp/research/buribushi
#Fellowship
OIST is offering a unique opportunity for early-career, theory-focused researchers to lead their own projects with full funding support.
Learn more & Apply by November 30th: https://www.oist.jp/research/buribushi
#Fellowship
October 31, 2025 at 6:00 AM
Applications are now open for the Buribushi Fellowship 2026!
OIST is offering a unique opportunity for early-career, theory-focused researchers to lead their own projects with full funding support.
Learn more & Apply by November 30th: https://www.oist.jp/research/buribushi
#Fellowship
OIST is offering a unique opportunity for early-career, theory-focused researchers to lead their own projects with full funding support.
Learn more & Apply by November 30th: https://www.oist.jp/research/buribushi
#Fellowship
Reposted by ssolo.bsky.social
Our latest, led by Edu Ocaña-Pallarès and @ssolo.bsky.social, a timescale for fungal phylogeny that wrangles calibration from the unstructured fossil record of fungi and a history of horizontal gene transfers
www.nature.com/articles/s41...
www.nature.com/articles/s41...
A timetree of Fungi dated with fossils and horizontal gene transfers - Nature Ecology & Evolution
Combining fossil-based and molecular calibrations with data on horizontal gene transfer events, the authors develop a time-calibrated phylogeny of Fungi. This timescale, which integrates analytic uncertainties, suggests an older age of crown Fungi (1,401–896 million years ago), as well as a minimum age for ancient interactions involving fungi and the algal ancestors of embryophytes in terrestrial ecosystems (1,253–797 Ma).
www.nature.com
October 7, 2025 at 9:41 AM
Our latest, led by Edu Ocaña-Pallarès and @ssolo.bsky.social, a timescale for fungal phylogeny that wrangles calibration from the unstructured fossil record of fungi and a history of horizontal gene transfers
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by ssolo.bsky.social
In @natecoevo.nature.com , our researchers describe a new fungal family tree reaching back over a billion years, and the importance of fungi in setting the stage for ancient life on land. Read more at www.oist.jp/news-center/...
Fungi set the stage for life on land hundreds of millions of years earlier than thought
From fossils and rare genetic ‘gene-swap’ clues, researchers reconstruct fungi’s deep timeline and reveal how they helped shape early Earth ecosystems.
www.oist.jp
October 2, 2025 at 5:18 AM
In @natecoevo.nature.com , our researchers describe a new fungal family tree reaching back over a billion years, and the importance of fungi in setting the stage for ancient life on land. Read more at www.oist.jp/news-center/...
Reposted by ssolo.bsky.social
Alternatively, read the full article at doi.org/10.1038/s415...
A timetree of Fungi dated with fossils and horizontal gene transfers - Nature Ecology & Evolution
Combining fossil-based and molecular calibrations with data on horizontal gene transfer events, the authors develop a time-calibrated phylogeny of Fungi. This timescale, which integrates analytic uncertainties, suggests an older age of crown Fungi (1,401–896 million years ago), as well as a minimum age for ancient interactions involving fungi and the algal ancestors of embryophytes in terrestrial ecosystems (1,253–797 Ma).
doi.org
October 2, 2025 at 5:18 AM
Alternatively, read the full article at doi.org/10.1038/s415...
Reposted by ssolo.bsky.social
Out now in @science.org, OIST researchers and collaborators find 79% of endemic ant species in Fiji in decline, highlighting the vulnerability of island biodiversity to ecosystem changes: www.oist.jp/news-center/...
Island ant communities show signs of ‘insect apocalypse’
79% of endemic species show signs of decline, highlighting the vulnerability of island biodiversity to ecosystem changes.
www.oist.jp
September 12, 2025 at 5:54 AM
Out now in @science.org, OIST researchers and collaborators find 79% of endemic ant species in Fiji in decline, highlighting the vulnerability of island biodiversity to ecosystem changes: www.oist.jp/news-center/...
Reposted by ssolo.bsky.social
New @nature.com study: Prof. Oleg Sitsel (OIST) and collaborators uncover how PMCA calcium pumps use PIP2 lipids for ultra-fast transport at cell membranes — a discovery that may pave the way for new therapies. 🧬 dx.doi.org/10.1038/s415...
Molecular mechanism of ultrafast transport by plasma membrane Ca2+-ATPases - Nature
Structural insights into ultrafast Ca2+ transport by plasma membrane Ca2+-ATPases are provided, highlighting an essential role for PtdIns(4,5)P2 dynamics.
dx.doi.org
September 24, 2025 at 4:07 AM
New @nature.com study: Prof. Oleg Sitsel (OIST) and collaborators uncover how PMCA calcium pumps use PIP2 lipids for ultra-fast transport at cell membranes — a discovery that may pave the way for new therapies. 🧬 dx.doi.org/10.1038/s415...
Reposted by ssolo.bsky.social
“Insects are essential for the environment,” emphasizes Prof. Evan Economo. “As scientists, we need to play our part in their protection, and provide and analyze the relevant data to ensure the long-term integrity of our ecosystems”.
Read the full study @science.org www.science.org/doi/10.1126/...
Read the full study @science.org www.science.org/doi/10.1126/...
Genomic signatures indicate biodiversity loss in an endemic island ant fauna
Insect populations have declined worldwide, but the extent and drivers of these declines are debated. Most studies rely on field surveys performed in the past century, leaving gaps in our understandin...
www.science.org
September 12, 2025 at 5:54 AM
“Insects are essential for the environment,” emphasizes Prof. Evan Economo. “As scientists, we need to play our part in their protection, and provide and analyze the relevant data to ensure the long-term integrity of our ecosystems”.
Read the full study @science.org www.science.org/doi/10.1126/...
Read the full study @science.org www.science.org/doi/10.1126/...
Reposted by ssolo.bsky.social
OIST PhD & Research Internship Program - Call for Applications!
🔗Research Internship: shorturl.at/EJMGe (Deadline: 15 October 2025)
🔗 PhD program: shorturl.at/lhheq (Deadline: 15 November 2025)
🔗Research Internship: shorturl.at/EJMGe (Deadline: 15 October 2025)
🔗 PhD program: shorturl.at/lhheq (Deadline: 15 November 2025)
September 4, 2025 at 8:38 AM
OIST PhD & Research Internship Program - Call for Applications!
🔗Research Internship: shorturl.at/EJMGe (Deadline: 15 October 2025)
🔗 PhD program: shorturl.at/lhheq (Deadline: 15 November 2025)
🔗Research Internship: shorturl.at/EJMGe (Deadline: 15 October 2025)
🔗 PhD program: shorturl.at/lhheq (Deadline: 15 November 2025)
Reposted by ssolo.bsky.social
📢 #FacultyHiring: OIST is hiring! We invite exceptional scientists to apply for faculty positions in:
- Ecology, Environmental Science, Earth Science, and Oceanography
- Physics and Quantum Science (including related fields)
🔗: www.oist.jp/careers/facu...
- Ecology, Environmental Science, Earth Science, and Oceanography
- Physics and Quantum Science (including related fields)
🔗: www.oist.jp/careers/facu...
August 19, 2025 at 7:45 AM
📢 #FacultyHiring: OIST is hiring! We invite exceptional scientists to apply for faculty positions in:
- Ecology, Environmental Science, Earth Science, and Oceanography
- Physics and Quantum Science (including related fields)
🔗: www.oist.jp/careers/facu...
- Ecology, Environmental Science, Earth Science, and Oceanography
- Physics and Quantum Science (including related fields)
🔗: www.oist.jp/careers/facu...
Reposted by ssolo.bsky.social
Understanding plant-microbe symbiosis is essential in tackling global challenges like food security and ecosystem restoration. In ISME Journal, OIST researchers describe the unique symbiosis between T. azollae cyanobacteria and Azolla ferns: www.oist.jp/news-center/...
Fern leaf pockets hide secrets of plant-microbe symbiosis
Comparison of symbiotic bacteria to free-living relatives shows the genomic effects of host adaptation.
www.oist.jp
August 18, 2025 at 5:39 AM
Understanding plant-microbe symbiosis is essential in tackling global challenges like food security and ecosystem restoration. In ISME Journal, OIST researchers describe the unique symbiosis between T. azollae cyanobacteria and Azolla ferns: www.oist.jp/news-center/...
Reposted by ssolo.bsky.social
4/ 🧵 This project is with @anja1.bsky.social, @tweethinking.bsky.social, @ssolo.bsky.social , @ettema.bsky.social,@chrisrinke.bsky.social, Zheng-Shuang Hua Maraike Probst and Lenard Szantho.
May 23, 2025 at 10:19 AM
4/ 🧵 This project is with @anja1.bsky.social, @tweethinking.bsky.social, @ssolo.bsky.social , @ettema.bsky.social,@chrisrinke.bsky.social, Zheng-Shuang Hua Maraike Probst and Lenard Szantho.
Reposted by ssolo.bsky.social
Very happy to announce our new paper on the evolution of metabolism is out now! royalsocietypublishing.org/doi/10.1098/...
With @tweethinking.bsky.social @sabifo4.bsky.social @ssolo.bsky.social Davide Pisani, Tim Lenton and @phil-donoghue.bsky.social
(1/2)
With @tweethinking.bsky.social @sabifo4.bsky.social @ssolo.bsky.social Davide Pisani, Tim Lenton and @phil-donoghue.bsky.social
(1/2)
The emergence of metabolisms through Earth history and implications for biospheric evolution | Philosophical Transactions of the Royal Society B: Biological Sciences
We investigate the evolution of microbial metabolisms from the last universal common
ancestor to the extant biota through comparative phylogenomics, reconciling the evolution
of the genes that underpi...
royalsocietypublishing.org
August 12, 2025 at 9:48 AM
Very happy to announce our new paper on the evolution of metabolism is out now! royalsocietypublishing.org/doi/10.1098/...
With @tweethinking.bsky.social @sabifo4.bsky.social @ssolo.bsky.social Davide Pisani, Tim Lenton and @phil-donoghue.bsky.social
(1/2)
With @tweethinking.bsky.social @sabifo4.bsky.social @ssolo.bsky.social Davide Pisani, Tim Lenton and @phil-donoghue.bsky.social
(1/2)
Reposted by ssolo.bsky.social
🚨 I’m looking for two enthusiastic scientists to join our team at Cambridge to explore the molecular mechanisms of lactation, early nutrition, and their long-term impact on health.
Apply here:
👉 RA: www.jobs.cam.ac.uk/job/51988/
👉 Postdoc: www.jobs.cam.ac.uk/job/51984/
Please share 🔬👩🔬
Apply here:
👉 RA: www.jobs.cam.ac.uk/job/51988/
👉 Postdoc: www.jobs.cam.ac.uk/job/51984/
Please share 🔬👩🔬
Research Assistant (Fixed Term) - Job Opportunities - University of Cambridge
Research Assistant (Fixed Term) in the Department of Physiology, Development and Neuroscience at the University of Cambridge.
www.jobs.cam.ac.uk
July 24, 2025 at 8:34 AM
🚨 I’m looking for two enthusiastic scientists to join our team at Cambridge to explore the molecular mechanisms of lactation, early nutrition, and their long-term impact on health.
Apply here:
👉 RA: www.jobs.cam.ac.uk/job/51988/
👉 Postdoc: www.jobs.cam.ac.uk/job/51984/
Please share 🔬👩🔬
Apply here:
👉 RA: www.jobs.cam.ac.uk/job/51988/
👉 Postdoc: www.jobs.cam.ac.uk/job/51984/
Please share 🔬👩🔬
Reposted by ssolo.bsky.social
New vacancy in my team!
PhD student position on microbial genome evolution, focusing on the evolutionary principles underlying bacterial genome architecture.
Please repost and share with talented MSc students in #evobio, bioinformatics or related :)
www.uu.nl/en/organisat...
#MEvoSky #MicroSky
PhD student position on microbial genome evolution, focusing on the evolutionary principles underlying bacterial genome architecture.
Please repost and share with talented MSc students in #evobio, bioinformatics or related :)
www.uu.nl/en/organisat...
#MEvoSky #MicroSky
May 14, 2025 at 2:07 PM
New vacancy in my team!
PhD student position on microbial genome evolution, focusing on the evolutionary principles underlying bacterial genome architecture.
Please repost and share with talented MSc students in #evobio, bioinformatics or related :)
www.uu.nl/en/organisat...
#MEvoSky #MicroSky
PhD student position on microbial genome evolution, focusing on the evolutionary principles underlying bacterial genome architecture.
Please repost and share with talented MSc students in #evobio, bioinformatics or related :)
www.uu.nl/en/organisat...
#MEvoSky #MicroSky
Reposted by ssolo.bsky.social
Lyft driver picked me up from UNC, turned out he was a medicinal chemistry post-doc in a building near mine, until his grant got cut last month.
Worked on novel antivirals.
Worked on novel antivirals.
June 4, 2025 at 8:33 PM
Lyft driver picked me up from UNC, turned out he was a medicinal chemistry post-doc in a building near mine, until his grant got cut last month.
Worked on novel antivirals.
Worked on novel antivirals.
Reposted by ssolo.bsky.social
We have 2-3 group leader positions opening @fimm-uh.bsky.social !!
We are looking for outstanding candidates in human genetics and precision medicine.
This time we have a focus on population health data science. E.g. AI for EHR/health data
Generous starting package 💰
shorturl.at/FAk6n
We are looking for outstanding candidates in human genetics and precision medicine.
This time we have a focus on population health data science. E.g. AI for EHR/health data
Generous starting package 💰
shorturl.at/FAk6n
FIMM-EMBL Group Leaders in Molecular Medicine
FIMM-EMBL Group Leaders in Molecular Medicine
jobs.helsinki.fi
June 1, 2025 at 3:38 PM
We have 2-3 group leader positions opening @fimm-uh.bsky.social !!
We are looking for outstanding candidates in human genetics and precision medicine.
This time we have a focus on population health data science. E.g. AI for EHR/health data
Generous starting package 💰
shorturl.at/FAk6n
We are looking for outstanding candidates in human genetics and precision medicine.
This time we have a focus on population health data science. E.g. AI for EHR/health data
Generous starting package 💰
shorturl.at/FAk6n
Reposted by ssolo.bsky.social
The biggest gift the US can give to its global rivals is to ideologically motivated slashing investment in scientific, biomedical and technological research and innovation and driving away talent abroad.
There are 2 previous historical cases of countries destroying their science and universities, crippling them for decades: Lysenkoism in the USSR and Nazi Germany. The Trump administration will be the 3rd.
It's not just budgets but research, institutions, expertise, and training the next generation.
It's not just budgets but research, institutions, expertise, and training the next generation.
May 31, 2025 at 1:40 PM
The biggest gift the US can give to its global rivals is to ideologically motivated slashing investment in scientific, biomedical and technological research and innovation and driving away talent abroad.
Reposted by ssolo.bsky.social
Looking for a postdoc on bacterial-insect symbiosis, combining evolution and molecular mechanisms? I'll have one open in my lab starting Sept 2025. If interested contact me (or find me at the GRC on Animal-microbe symbiosis if you'll be there). #SymbioSky
May 29, 2025 at 8:11 PM
Looking for a postdoc on bacterial-insect symbiosis, combining evolution and molecular mechanisms? I'll have one open in my lab starting Sept 2025. If interested contact me (or find me at the GRC on Animal-microbe symbiosis if you'll be there). #SymbioSky
Reposted by ssolo.bsky.social
Today, the ERC formally adopted a decision to increase its support for researchers moving to Europe.
On top of its normal grants, the ERC offers 'start-up' funding to help PIs establish laboratories / research teams in Europe.
This extra funding is now x2 (up to €2 million!)
europa.eu/!6Vdgmp
On top of its normal grants, the ERC offers 'start-up' funding to help PIs establish laboratories / research teams in Europe.
This extra funding is now x2 (up to €2 million!)
europa.eu/!6Vdgmp
May 16, 2025 at 10:58 AM
Today, the ERC formally adopted a decision to increase its support for researchers moving to Europe.
On top of its normal grants, the ERC offers 'start-up' funding to help PIs establish laboratories / research teams in Europe.
This extra funding is now x2 (up to €2 million!)
europa.eu/!6Vdgmp
On top of its normal grants, the ERC offers 'start-up' funding to help PIs establish laboratories / research teams in Europe.
This extra funding is now x2 (up to €2 million!)
europa.eu/!6Vdgmp
Reposted by ssolo.bsky.social
OK, this is wild.
In September 2023, geophysicists across the world started monitoring a very odd signal coming from the ground under them.
It was picked up in the Arctic. And Antarctica. It was detected everywhere, every 90 seconds, as regular as a metronome, for *nine days*.
What the HELL?
1/
In September 2023, geophysicists across the world started monitoring a very odd signal coming from the ground under them.
It was picked up in the Arctic. And Antarctica. It was detected everywhere, every 90 seconds, as regular as a metronome, for *nine days*.
What the HELL?
1/
May 12, 2025 at 3:20 PM
OK, this is wild.
In September 2023, geophysicists across the world started monitoring a very odd signal coming from the ground under them.
It was picked up in the Arctic. And Antarctica. It was detected everywhere, every 90 seconds, as regular as a metronome, for *nine days*.
What the HELL?
1/
In September 2023, geophysicists across the world started monitoring a very odd signal coming from the ground under them.
It was picked up in the Arctic. And Antarctica. It was detected everywhere, every 90 seconds, as regular as a metronome, for *nine days*.
What the HELL?
1/
Reposted by ssolo.bsky.social
Great to see our paper on SAR11 SBPs, published in Nature, selected as a 2025 national Frontiers Planet Prize champion!
SAR11 Bacteria’s Role in Carbon Cycling and Climate Solutions — Frontiers Planet Prize
Paola Laurino from the Okinawa Institute of Science and Technology, National Champion for Japan, reveals groundbreaking insights into SAR11 bacteria, the most abundant microbes on Earth. Her study unc...
www.frontiersplanetprize.org
April 28, 2025 at 1:37 PM
Great to see our paper on SAR11 SBPs, published in Nature, selected as a 2025 national Frontiers Planet Prize champion!
Reposted by ssolo.bsky.social
The ‘fuel’ of our cells, ATP, has been found to regulate the viscosity of the cytoplasm in axons 🧠 This influences the rate of harmful aggregation of proteins in neurodegenerative diseases like Parkinson’s and ALS. New discovery in #ScienceAdvances 👇
ATP prevents harmful aggregation of proteins associated with Parkinson’s and ALS
ATP, the ‘fuel’ of our cells, has been found to make the cytosol in axons more liquid, stopping proteins from clustering and causing harm.
www.oist.jp
April 24, 2025 at 2:15 AM
The ‘fuel’ of our cells, ATP, has been found to regulate the viscosity of the cytoplasm in axons 🧠 This influences the rate of harmful aggregation of proteins in neurodegenerative diseases like Parkinson’s and ALS. New discovery in #ScienceAdvances 👇
Reposted by ssolo.bsky.social
With a heavy heart I have decided not to attend a meeting in the US this June. I can’t act as if things are normal when science, universities, dissent & truth are all under threat. And I feel I can’t attend when there are scientists who are not able to travel to the US without fear of arrest.
April 11, 2025 at 8:05 PM
With a heavy heart I have decided not to attend a meeting in the US this June. I can’t act as if things are normal when science, universities, dissent & truth are all under threat. And I feel I can’t attend when there are scientists who are not able to travel to the US without fear of arrest.
Reposted by ssolo.bsky.social
This is important
☕🌊 Coffee too weak? Pour more slowly
A new study found that even a gentle water jet creates avalanches in coffee grounds, boosting mixing and extraction.
Slower pours = stronger brews with less coffee.
🔗 doi.org/10.1063/5.02...
#Coffee #SciComm 🧪
A new study found that even a gentle water jet creates avalanches in coffee grounds, boosting mixing and extraction.
Slower pours = stronger brews with less coffee.
🔗 doi.org/10.1063/5.02...
#Coffee #SciComm 🧪
Pour-over coffee: Mixing by a water jet impinging on a granular bed with avalanche dynamics
Coffee is one of the most consumed beverages in the world. However, issues such as climate change threaten the growth of the temperature-sensitive Coffea arabic
doi.org
April 11, 2025 at 8:31 AM
This is important
Reposted by ssolo.bsky.social
Hello binfies 👋!
There is an open position for a senior bioinformatician to join our fab **core bioinformatics** team at @quadraminstitute.bsky.social.
jobs.quadram.ac.uk/Details.asp?...
There is an open position for a senior bioinformatician to join our fab **core bioinformatics** team at @quadraminstitute.bsky.social.
jobs.quadram.ac.uk/Details.asp?...
April 10, 2025 at 8:31 AM
Hello binfies 👋!
There is an open position for a senior bioinformatician to join our fab **core bioinformatics** team at @quadraminstitute.bsky.social.
jobs.quadram.ac.uk/Details.asp?...
There is an open position for a senior bioinformatician to join our fab **core bioinformatics** team at @quadraminstitute.bsky.social.
jobs.quadram.ac.uk/Details.asp?...