Nicoletta Favale
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nicolettaf.bsky.social
Nicoletta Favale
@nicolettaf.bsky.social
Bioinformatician💻🧬
Previously microbiologist 🦠🔬
Reposted by Nicoletta Favale
Super thrilled to share our labor of love from the Asian Skin Microbiome Program! We collected >3,500 skin samples, built metagenomic libraries w/ >70 billion reads and >10TB of data to study heterogeneity of the skin microbiome in the general population (200 adults, 18 sites) t.co/ZylbJMpvpw
Large-scale skin metagenomics reveals extensive prevalence, coordination, and functional adaptation of skin microbiome dermotypes across body sites
The human skin microbiome is increasingly recognized to influence skin health, immune function and disease susceptibility. However, large-scale, multi-site metagenomic studies in the general populatio...
www.biorxiv.org
April 28, 2025 at 4:52 AM
Reposted by Nicoletta Favale
millennials today (again)
April 3, 2025 at 3:01 PM
Reposted by Nicoletta Favale
It’s always “We launched these tardigrades into space!” “We froze them to absolute zero!” “We threw them into an erupting volcano!”

Never “We took these tardigrades on a holiday. They’re getting tiny massages and sipping little umbrella drinks on the beach.”
April 3, 2025 at 5:57 PM
Reposted by Nicoletta Favale
New to data science with #RStats or need a refresher? I always recommend R for Data Science (r4ds.hadley.nz) – a free online book by @hadley.nz that takes you from importing data to statistical modeling in a gentle, beginner-friendly way. #datascience #rladies #r4ds
R for Data Science (2e)
r4ds.hadley.nz
April 3, 2025 at 12:58 PM
Reposted by Nicoletta Favale
Biology is the only science where multiplication is the same thing as division. 🧪
April 2, 2025 at 4:52 AM
My first post here is a little bit egotistical, but I'm thrilled to share our latest paper on metagenomic analysis during anaerobic digestion of different renewable wastes. It took a long time, and I'm very happy and proud!
www.sciencedirect.com/science/arti...
Comparison of microbiome community structure and dynamics during anaerobic digestion of different renewable solid wastes
This study analysed the effect of the different lignocellulose composition of two crop substrates on the structure and dynamics of bacterial communiti…
www.sciencedirect.com
April 1, 2025 at 9:08 AM
Reposted by Nicoletta Favale
I LOVE REGULATION. I LOVE THE PEACE OF MIND KNOWING THAT A RESTAURANT IS SAFE TO EAT AND A PRODUCT WONT KILL ME. I WANT MORE REGULATION. I DONT WANT CORPORATIONS TO BREATHE WITHOUT GOVERNMENT PERMISSION.
March 31, 2025 at 1:38 AM
Reposted by Nicoletta Favale
More than 1,900 scientists write letter in ‘SOS’ over Trump’s attacks on science

Members of the National Academies of Sciences, Engineering and Medicine warned Americans of ‘real danger in this moment’

www.theguardian.com/us-news/2025...
www.theguardian.com
April 1, 2025 at 12:37 AM
Reposted by Nicoletta Favale
There are days in life that shake you.

I’m shattered 💔 to share that I just found out that the US Government terminated my 2024 NIH Director’s Early Independence Award (~$2 million), threatening my long-promised assistant professor job at Columbia University
& academic career... 1/🧵
March 18, 2025 at 11:27 PM
Reposted by Nicoletta Favale
Hey #microbiome people,

Some time ago, I started compiling several lists (& still regularly updating them):

Bioinformatics learning github.com/SvetlanaUP/A...

Microbiome events github.com/SvetlanaUP/M...

Microbiome podcasts github.com/SvetlanaUP/M...

Pls add if I missed something!
GitHub - SvetlanaUP/A-microbiologist-wants-to-compute: This repo collects the list of learning online resources related to microbiome computational science and tools.
This repo collects the list of learning online resources related to microbiome computational science and tools. - SvetlanaUP/A-microbiologist-wants-to-compute
github.com
October 18, 2024 at 7:40 AM
Reposted by Nicoletta Favale
Try our new in silico PCR (sPCR) tool sharkmer- github.com/caseywdunn/s.... You give it primers and fastq reads, it gives you sequences that would be amplified by PCR. Works in minutes on a laptop for high copy regions like rRNA, great for species id etc. Feedback welcome. #bioinformatics #ngs
GitHub - caseywdunn/sharkmer
Contribute to caseywdunn/sharkmer development by creating an account on GitHub.
github.com
January 29, 2025 at 7:49 PM
Reposted by Nicoletta Favale
January 29, 2025 at 8:11 PM
Reposted by Nicoletta Favale
Three keys to unlocking successful manuscripts

PDF Download
www.cell.com/matter/pdf/S...
January 30, 2025 at 2:50 AM
Reposted by Nicoletta Favale
@hologenomics.bsky.social we're super excited to announce the release of #MicrobialConnections - a new #podcast series where we together with #experts dive into the exciting aspects of #holobiont #biology 🦠

🎧Listen and subscribe👇
microbial-connections.simplecast.com

@dg.dk @ucph.bsky.social
January 31, 2025 at 11:46 AM
Reposted by Nicoletta Favale
This is a great idea for a program, and one that will hopefully help drive innovation and early career applied research!
December 3, 2024 at 8:52 PM
Reposted by Nicoletta Favale
Does anybody have cool photos/videos of bacteria that you'd be willing to share? (be it microscopes, agar plates, anything really!) I'm doing an outreach session with an infant school, talking to them about good and bad bacteria and I need more cool visuals to show them 😊 DMs are open
#scisky
December 4, 2024 at 10:53 AM
Reposted by Nicoletta Favale
My PhD work is now published in Nature Microbiology! Please, have a look!
December 2, 2024 at 4:04 PM
Reposted by Nicoletta Favale
A thread with some new starter packs in genomics and bioinformatics 🧵 1/13...
November 15, 2024 at 9:56 AM
Reposted by Nicoletta Favale
Are you a data creator/user in #metagenomics or other #omics? We’re working on standards for fair data reuse and would like your feedback. We welcome contributions by scientists from all career stages. 5-min anonymous survey here: shorturl.at/NOUW2 Please RT!
January 15, 2024 at 3:57 PM