Camila Duitama
@camiladuitama.bsky.social
Bioinformatics🧬👩🏽💻 and politics👈. Decolonial, anticapitalist, anti imperialist and migrant from 🇨🇴currently living in 🇫🇷. Un corazón de mango 🥭 del Sinú.
Pinned
MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data
AbstractSummary. MUSET is a novel set of utilities designed to efficiently construct abundance unitig matrices from sequencing data. Unitig matrices extend
academic.oup.com
🧬 Excited to share our latest work, MUSET 🌭, a new tool for creating abundance unitig matrices from sequencing data. It was published yesterday in Oxford Bioinformatics if you want to have a look👀 :
academic.oup.com/bioinformati...
Let's break it down:
academic.oup.com/bioinformati...
Let's break it down:
Reposted by Camila Duitama
Still looking for our perfect doctoral candidate as part of @evomg-dn.bsky.social - come and join us to work on the evolutionary pressures that shape gene expression and disease in the uterus!
Please RT (or is it RB? not sure how our lingo has changed!)
Please RT (or is it RB? not sure how our lingo has changed!)
🚨 15 days left to apply!
Be part of EvoMG-DN and advance your PhD career in evolutionary genomics.
👉 www.evomg-dn.eu
#PhD #DoctoralTraining #ResearchCareers #LifeSciences #BiomedicalResearch #Genomics #EvolutionaryBiology #MSCA #HorizonEurope #EUResearch #ResearchOpportunities #PhDPositions
Be part of EvoMG-DN and advance your PhD career in evolutionary genomics.
👉 www.evomg-dn.eu
#PhD #DoctoralTraining #ResearchCareers #LifeSciences #BiomedicalResearch #Genomics #EvolutionaryBiology #MSCA #HorizonEurope #EUResearch #ResearchOpportunities #PhDPositions
November 14, 2025 at 10:22 AM
Still looking for our perfect doctoral candidate as part of @evomg-dn.bsky.social - come and join us to work on the evolutionary pressures that shape gene expression and disease in the uterus!
Please RT (or is it RB? not sure how our lingo has changed!)
Please RT (or is it RB? not sure how our lingo has changed!)
Reposted by Camila Duitama
Imagination is resistance, @ruha9.bsky.social reminds us that, " we need to reject the gospel that says technology is inevitable, that the train has left the station... In an error of automated bullshit, it’s time to become bullshit detectors,"
#MozFest
#MozFest
November 8, 2025 at 5:31 PM
Imagination is resistance, @ruha9.bsky.social reminds us that, " we need to reject the gospel that says technology is inevitable, that the train has left the station... In an error of automated bullshit, it’s time to become bullshit detectors,"
#MozFest
#MozFest
Reposted by Camila Duitama
Good things are possible and we don’t have to settle.
November 5, 2025 at 3:35 AM
Good things are possible and we don’t have to settle.
Reposted by Camila Duitama
sorry it's still so funny we woke up to Dick Cheney dying today too
November 5, 2025 at 4:37 AM
sorry it's still so funny we woke up to Dick Cheney dying today too
Reposted by Camila Duitama
www.biorxiv.org/cgi/content/...
What’s behind Metapuccino? ☕️, by PhD student Fiona Hak, @camillemrcht.bsky.social and Melina Gallopin. A thread 👇
What’s behind Metapuccino? ☕️, by PhD student Fiona Hak, @camillemrcht.bsky.social and Melina Gallopin. A thread 👇
Metappuccino: Large Language Model-driven Reconstruction of Sequence Read Archive Metadata for Cancer Research
Motivation: High-throughput RNA-sequencing has significantly advanced transcriptomic profiling in oncology. Millions of RNA-seq datasets have accumulated in public databases such as the Sequence Read ...
www.biorxiv.org
November 2, 2025 at 10:14 AM
www.biorxiv.org/cgi/content/...
What’s behind Metapuccino? ☕️, by PhD student Fiona Hak, @camillemrcht.bsky.social and Melina Gallopin. A thread 👇
What’s behind Metapuccino? ☕️, by PhD student Fiona Hak, @camillemrcht.bsky.social and Melina Gallopin. A thread 👇
What is the most exciting bioinformatic research you’ve recently come across? I am interested in people who try to democratize knowledge, helping others and who aren't obsessed with publishing papers and satisfying their own curiosity. I want to find research that matters 👏
October 27, 2025 at 7:37 PM
What is the most exciting bioinformatic research you’ve recently come across? I am interested in people who try to democratize knowledge, helping others and who aren't obsessed with publishing papers and satisfying their own curiosity. I want to find research that matters 👏
Reposted by Camila Duitama
CEO-to-worker pay ratio in 1965: 20-1
CEO-to-worker pay ratio in 1990: 75-1
CEO-to-worker pay ratio today: 280-to-1
Trickle-down economics was always a sham.
Nothing has ever trickled down.
CEO-to-worker pay ratio in 1990: 75-1
CEO-to-worker pay ratio today: 280-to-1
Trickle-down economics was always a sham.
Nothing has ever trickled down.
October 18, 2025 at 8:00 PM
CEO-to-worker pay ratio in 1965: 20-1
CEO-to-worker pay ratio in 1990: 75-1
CEO-to-worker pay ratio today: 280-to-1
Trickle-down economics was always a sham.
Nothing has ever trickled down.
CEO-to-worker pay ratio in 1990: 75-1
CEO-to-worker pay ratio today: 280-to-1
Trickle-down economics was always a sham.
Nothing has ever trickled down.
From the river to the sea, Palestine will be free 🇵🇸
October 2, 2025 at 4:28 PM
From the river to the sea, Palestine will be free 🇵🇸
Reposted by Camila Duitama
Sometimes you meet absolutely incredible bioinfo-magicians.
It was a huge privilege when @shenwei356.bsky.social
joined our group for a year on an @embl.org sabbatical.
While here, he developed a new way of aligning to
millions of bacteria, called LexicMap 1/n
www.nature.com/articles/s41...
It was a huge privilege when @shenwei356.bsky.social
joined our group for a year on an @embl.org sabbatical.
While here, he developed a new way of aligning to
millions of bacteria, called LexicMap 1/n
www.nature.com/articles/s41...
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap - Nature Biotechnology
LexicMap uses a fixed set of probes to efficiently query gene sequences for fast and low-memory alignment.
www.nature.com
September 10, 2025 at 9:12 AM
Sometimes you meet absolutely incredible bioinfo-magicians.
It was a huge privilege when @shenwei356.bsky.social
joined our group for a year on an @embl.org sabbatical.
While here, he developed a new way of aligning to
millions of bacteria, called LexicMap 1/n
www.nature.com/articles/s41...
It was a huge privilege when @shenwei356.bsky.social
joined our group for a year on an @embl.org sabbatical.
While here, he developed a new way of aligning to
millions of bacteria, called LexicMap 1/n
www.nature.com/articles/s41...
Reposted by Camila Duitama
🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
September 3, 2025 at 8:39 AM
🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Reposted by Camila Duitama
Curious about how antibodies can target Plasmodium sporozoites?
Very happy to see this review out, it means a lot to me to finish my PhD research topic with a nice overview of what is known about how anti-CSP Abs neutralize the parasite in the mammalian host.
Very happy to see this review out, it means a lot to me to finish my PhD research topic with a nice overview of what is known about how anti-CSP Abs neutralize the parasite in the mammalian host.
New Review alert! Tissue-dependent protection mechanisms of #antibodies targeting #Plasmodium #sporozoites, authored by @maguirreb.bsky.social & Rogerio Amino. #malaria #circumsporozoiteprotein #CSP @pasteur.fr @upcite.bsky.social
authors.elsevier.com/a/1lhKa5Eb1x...
authors.elsevier.com/a/1lhKa5Eb1x...
September 2, 2025 at 10:06 PM
Curious about how antibodies can target Plasmodium sporozoites?
Very happy to see this review out, it means a lot to me to finish my PhD research topic with a nice overview of what is known about how anti-CSP Abs neutralize the parasite in the mammalian host.
Very happy to see this review out, it means a lot to me to finish my PhD research topic with a nice overview of what is known about how anti-CSP Abs neutralize the parasite in the mammalian host.
Que orgullo haber dedicado más de treinta años a construir la educación pública en Colombia. Aun en el capitalismo se puede ser coherente, se puede tener principios, se puede trabajar por lo colectivo. Se puede hacer y se debe hacer. Un honor ser hija tuya @freddyduitama.bsky.social
July 18, 2025 at 3:39 PM
Que orgullo haber dedicado más de treinta años a construir la educación pública en Colombia. Aun en el capitalismo se puede ser coherente, se puede tener principios, se puede trabajar por lo colectivo. Se puede hacer y se debe hacer. Un honor ser hija tuya @freddyduitama.bsky.social
Reposted by Camila Duitama
A UN report names companies complicit in Israel’s war and genocide on Gaza, including US giants and firms from China to Mexico.
Who are they? aje.io/6sq25k
Who are they? aje.io/6sq25k
July 1, 2025 at 9:56 PM
A UN report names companies complicit in Israel’s war and genocide on Gaza, including US giants and firms from China to Mexico.
Who are they? aje.io/6sq25k
Who are they? aje.io/6sq25k
Naomi Klein on Zionism:
June 8, 2025 at 6:13 PM
Naomi Klein on Zionism:
Reposted by Camila Duitama
Quién iba a decir que al tecnofeudalismo se le combate apostando por el código abierto.
January 27, 2025 at 6:28 PM
Quién iba a decir que al tecnofeudalismo se le combate apostando por el código abierto.
Fantastic talk today by @ardemp.bskyverified.social at @pasteur.fr. It can’t be any clearer: science *is* political.
May 28, 2025 at 7:00 PM
Fantastic talk today by @ardemp.bskyverified.social at @pasteur.fr. It can’t be any clearer: science *is* political.
Reposted by Camila Duitama
Microsoft has sacked Ibtihal Aboussad and Vaniya Agrawal after they disrupted the company’s 50th-anniversary event in protest against its ties with the Israeli military, reports the Associated Press news agency.
🔴 LIVE updates: aje.io/4wgn3k
🔴 LIVE updates: aje.io/4wgn3k
April 8, 2025 at 8:27 AM
Microsoft has sacked Ibtihal Aboussad and Vaniya Agrawal after they disrupted the company’s 50th-anniversary event in protest against its ties with the Israeli military, reports the Associated Press news agency.
🔴 LIVE updates: aje.io/4wgn3k
🔴 LIVE updates: aje.io/4wgn3k
Is perhaps this the only way Western scientists will begin to worry about the humiliating way in which migration laws have been imposed on people from the global south for years and years? This type of treatment is everyday life for many migrants around the world.
Le Monde reporting that a French scientist traveling to Houston to attend a conference was denied entry to US after a search of his phone & computer revealed messages critical of Trump's science cuts, "which [says CPB] conveyed hatred of Trump & could be qualified as terrorism". Computer confiscated
March 20, 2025 at 12:07 PM
Is perhaps this the only way Western scientists will begin to worry about the humiliating way in which migration laws have been imposed on people from the global south for years and years? This type of treatment is everyday life for many migrants around the world.
Reposted by Camila Duitama
science has never been devoid of politics
Elon Musk should be thrown out of the Royal Society, writes @rossandersen.bsky.social. Science has to be able to defend itself.
Politics Has Come for Science
Will science return the favor?
www.theatlantic.com
March 12, 2025 at 1:10 PM
science has never been devoid of politics
Reposted by Camila Duitama
Hi! I need help covering the costs of the surgery and PT to repair my shoulder labrum, an injury caused by cops two summers ago. I am very disabled and need help again to get out of my medical debt. Help me out if you can and please share if you can’t? (link below)
March 7, 2025 at 8:04 PM
Hi! I need help covering the costs of the surgery and PT to repair my shoulder labrum, an injury caused by cops two summers ago. I am very disabled and need help again to get out of my medical debt. Help me out if you can and please share if you can’t? (link below)
Reposted by Camila Duitama
Curious about the Late killing of Plasmodium berghei sporozoites in the liver by an anti-circumsporozoite protein antibody? doi.org/10.7554/eLif...
Late killing of Plasmodium berghei sporozoites in the liver by an anti-circumsporozoite protein antibody
A late-neutralizing monoclonal antibody targeting the major surface antigen of plasmodial sporozoites impairs the fitness of intracellular parasites, offering mechanistic insights to guide the develop...
doi.org
February 15, 2025 at 2:06 PM
Curious about the Late killing of Plasmodium berghei sporozoites in the liver by an anti-circumsporozoite protein antibody? doi.org/10.7554/eLif...
Reposted by Camila Duitama
I am probably on some government lists now but at least I am in good company.
February 13, 2025 at 2:13 PM
I am probably on some government lists now but at least I am in good company.
Reposted by Camila Duitama
Gulf of Distraction
February 12, 2025 at 11:31 PM
Gulf of Distraction