Camila Duitama
@camiladuitama.bsky.social
Bioinformatics🧬👩🏽💻 and politics👈. Decolonial, anticapitalist, anti imperialist and migrant from 🇨🇴currently living in 🇫🇷. Un corazón de mango 🥭 del Sinú.
From the river to the sea, Palestine will be free 🇵🇸
October 2, 2025 at 4:28 PM
From the river to the sea, Palestine will be free 🇵🇸
Que orgullo haber dedicado más de treinta años a construir la educación pública en Colombia. Aun en el capitalismo se puede ser coherente, se puede tener principios, se puede trabajar por lo colectivo. Se puede hacer y se debe hacer. Un honor ser hija tuya @freddyduitama.bsky.social
July 18, 2025 at 3:39 PM
Que orgullo haber dedicado más de treinta años a construir la educación pública en Colombia. Aun en el capitalismo se puede ser coherente, se puede tener principios, se puede trabajar por lo colectivo. Se puede hacer y se debe hacer. Un honor ser hija tuya @freddyduitama.bsky.social
Naomi Klein on Zionism:
June 8, 2025 at 6:13 PM
Naomi Klein on Zionism:
And by this I mean protesting against the genocide in Gaza.
June 1, 2025 at 6:31 AM
And by this I mean protesting against the genocide in Gaza.
Fantastic talk today by @ardemp.bskyverified.social at @pasteur.fr. It can’t be any clearer: science *is* political.
May 28, 2025 at 7:00 PM
Fantastic talk today by @ardemp.bskyverified.social at @pasteur.fr. It can’t be any clearer: science *is* political.
5/6 Performance Evaluation Highlights 📊
- MUSET can do 618 GB in <10 hours and <20GB RAM (with filtering of rows).
- 2-3 orders of magnitude matrix size reduction.
- Fast, low memory (but high disk).
- Direct abundance matrix generation.
- MUSET can do 618 GB in <10 hours and <20GB RAM (with filtering of rows).
- 2-3 orders of magnitude matrix size reduction.
- Fast, low memory (but high disk).
- Direct abundance matrix generation.
February 4, 2025 at 2:47 PM
5/6 Performance Evaluation Highlights 📊
- MUSET can do 618 GB in <10 hours and <20GB RAM (with filtering of rows).
- 2-3 orders of magnitude matrix size reduction.
- Fast, low memory (but high disk).
- Direct abundance matrix generation.
- MUSET can do 618 GB in <10 hours and <20GB RAM (with filtering of rows).
- 2-3 orders of magnitude matrix size reduction.
- Fast, low memory (but high disk).
- Direct abundance matrix generation.
4/6 Tool Description:
MUSET's pipeline is straightforward yet powerful 🛠️
- Uses kmtricks for efficient k-mer counting.
- Applies intelligent filtering based on their abundance in the samples.
- Generates unitigs using GGCAT.
- Constructs compact abundance matrices relying on SSHash.
MUSET's pipeline is straightforward yet powerful 🛠️
- Uses kmtricks for efficient k-mer counting.
- Applies intelligent filtering based on their abundance in the samples.
- Generates unitigs using GGCAT.
- Constructs compact abundance matrices relying on SSHash.
February 4, 2025 at 2:47 PM
4/6 Tool Description:
MUSET's pipeline is straightforward yet powerful 🛠️
- Uses kmtricks for efficient k-mer counting.
- Applies intelligent filtering based on their abundance in the samples.
- Generates unitigs using GGCAT.
- Constructs compact abundance matrices relying on SSHash.
MUSET's pipeline is straightforward yet powerful 🛠️
- Uses kmtricks for efficient k-mer counting.
- Applies intelligent filtering based on their abundance in the samples.
- Generates unitigs using GGCAT.
- Constructs compact abundance matrices relying on SSHash.
3/6 We've developed MUSET, a pipeline that efficiently creates abundance unitig matrices (rows are unitigs, columns are samples).
💡 Key innovation? We track not just presence/absence but actual sequence abundance across samples. 📈
💡 Key innovation? We track not just presence/absence but actual sequence abundance across samples. 📈
February 4, 2025 at 2:47 PM
3/6 We've developed MUSET, a pipeline that efficiently creates abundance unitig matrices (rows are unitigs, columns are samples).
💡 Key innovation? We track not just presence/absence but actual sequence abundance across samples. 📈
💡 Key innovation? We track not just presence/absence but actual sequence abundance across samples. 📈
1/6 What's a unitig? 🤔 It's an unambiguous stretch of DNA in a graph - a continuous path of k-mers without branches. Think of it as a compact way to represent genomic sequences without redundancy. 🧬📊
February 4, 2025 at 2:47 PM
1/6 What's a unitig? 🤔 It's an unambiguous stretch of DNA in a graph - a continuous path of k-mers without branches. Think of it as a compact way to represent genomic sequences without redundancy. 🧬📊
Discussing science and sharing dessert makes me do this faces @caina89.bsky.social. Thanks for all the advice as usual ☺️
December 2, 2024 at 2:35 PM
Discussing science and sharing dessert makes me do this faces @caina89.bsky.social. Thanks for all the advice as usual ☺️