Kate Warner presenting “Insights from GlyGen in Developing Sustainable Knowledgebases with Well-Defined Infrastructure Stacks” at #ISMB2025 showing how thoughtful design enables scalable, sustainable biodata infrastructure for FAIR and open glycoscience.
#glycotime #ISMBECCB2025
#glycotime #ISMBECCB2025
August 4, 2025 at 3:31 PM
Kate Warner presenting “Insights from GlyGen in Developing Sustainable Knowledgebases with Well-Defined Infrastructure Stacks” at #ISMB2025 showing how thoughtful design enables scalable, sustainable biodata infrastructure for FAIR and open glycoscience.
#glycotime #ISMBECCB2025
#glycotime #ISMBECCB2025
Peipei Ping: Bio-KARE: combines NER and relationship extraction, makes use of existing biomedical knowledgebases and ontologies. Uses transfer & reinforcement & imitation learning. #ismbeccb
December 8, 2024 at 12:12 AM
Peipei Ping: Bio-KARE: combines NER and relationship extraction, makes use of existing biomedical knowledgebases and ontologies. Uses transfer & reinforcement & imitation learning. #ismbeccb
The #GENETICS issue is now live! You'll find updates from 6 model organism databases & other knowledgebases including AgBioData Consortium, Candida Genome Database, @yeastgenome.bsky.social, SpudDB, Unified Phenotype Ontology, & @zfinmod.bsky.social.
What's on the cover? ⬇️🧵
What's on the cover? ⬇️🧵
March 18, 2025 at 4:00 PM
The #GENETICS issue is now live! You'll find updates from 6 model organism databases & other knowledgebases including AgBioData Consortium, Candida Genome Database, @yeastgenome.bsky.social, SpudDB, Unified Phenotype Ontology, & @zfinmod.bsky.social.
What's on the cover? ⬇️🧵
What's on the cover? ⬇️🧵
Chemical representation standardization needed to generalize metabolic pathway involvement prediction across the Kyoto Encyclopedia of Genes and Genomes, Reactome, and MetaCyc knowledgebases https://www.biorxiv.org/content/10.1101/2025.04.02.646918v1
April 8, 2025 at 11:06 PM
Chemical representation standardization needed to generalize metabolic pathway involvement prediction across the Kyoto Encyclopedia of Genes and Genomes, Reactome, and MetaCyc knowledgebases https://www.biorxiv.org/content/10.1101/2025.04.02.646918v1
Build a powerful, modern, and #self_hosted #wiki platform in minutes!
Perfect for teams, docs, and #knowledgebases – all containerized.
wiki.crowncloud.net?How_to_Insta...
#WikiJS #Docker #Ubuntu2504 #LinuxServer #Documentation #DevOps #SysAdmin #WebTools #DockerCompose #TeamCollaboration
Perfect for teams, docs, and #knowledgebases – all containerized.
wiki.crowncloud.net?How_to_Insta...
#WikiJS #Docker #Ubuntu2504 #LinuxServer #Documentation #DevOps #SysAdmin #WebTools #DockerCompose #TeamCollaboration
How To Install And Configure Wiki Js On Ubuntu 25 04
Light
wiki.crowncloud.net
June 6, 2025 at 4:03 PM
Build a powerful, modern, and #self_hosted #wiki platform in minutes!
Perfect for teams, docs, and #knowledgebases – all containerized.
wiki.crowncloud.net?How_to_Insta...
#WikiJS #Docker #Ubuntu2504 #LinuxServer #Documentation #DevOps #SysAdmin #WebTools #DockerCompose #TeamCollaboration
Perfect for teams, docs, and #knowledgebases – all containerized.
wiki.crowncloud.net?How_to_Insta...
#WikiJS #Docker #Ubuntu2504 #LinuxServer #Documentation #DevOps #SysAdmin #WebTools #DockerCompose #TeamCollaboration
It's like those fuck-awful knowledgebases where you try and do a query to Organisation and it says "is your query about 1 2 3 4 or 5, and you are trapped into these pre-set queries with either delayed option to write your own query, or simply unable to ask The Organisation unplanned Qs. HATE em.
October 25, 2025 at 4:28 PM
It's like those fuck-awful knowledgebases where you try and do a query to Organisation and it says "is your query about 1 2 3 4 or 5, and you are trapped into these pre-set queries with either delayed option to write your own query, or simply unable to ask The Organisation unplanned Qs. HATE em.
Tune in now to hear from invited VICC Co-Directors, Beth Pitel at @MayoClinic and Alex Wagner at @nationwidekids and @OhioState as they discuss clinical variant interpretation knowledgebases in cancer genomics. 1/4 #CGC Annual2025
August 6, 2025 at 3:03 PM
Tune in now to hear from invited VICC Co-Directors, Beth Pitel at @MayoClinic and Alex Wagner at @nationwidekids and @OhioState as they discuss clinical variant interpretation knowledgebases in cancer genomics. 1/4 #CGC Annual2025
Subtl.ai has project to empower 300k @RBI staff
Integrates company internal text documents, websites, videos, knowledgebases, chat & email
Have recently raised $100k in seed http://thehindubusinessline.com/info-tech/ai-search-startup-subtlai-raises-1-million-in-angel-funding/article66567096.ece
Integrates company internal text documents, websites, videos, knowledgebases, chat & email
Have recently raised $100k in seed http://thehindubusinessline.com/info-tech/ai-search-startup-subtlai-raises-1-million-in-angel-funding/article66567096.ece
June 16, 2023 at 9:00 PM
Subtl.ai has project to empower 300k @RBI staff
Integrates company internal text documents, websites, videos, knowledgebases, chat & email
Have recently raised $100k in seed http://thehindubusinessline.com/info-tech/ai-search-startup-subtlai-raises-1-million-in-angel-funding/article66567096.ece
Integrates company internal text documents, websites, videos, knowledgebases, chat & email
Have recently raised $100k in seed http://thehindubusinessline.com/info-tech/ai-search-startup-subtlai-raises-1-million-in-angel-funding/article66567096.ece
People should be making their websites / knowledgebases accessible for the visually impaired. But if it takes showing people that its good for AI too, at least it gets us a more accessible web for everyone.
www.linkedin.com/pulse/how-al...
#buildinpublic #accessibility #ai
www.linkedin.com/pulse/how-al...
#buildinpublic #accessibility #ai
How Alternative Text Boosts AI Accuracy and Accessibility
From day one, Customer Support Knowledge Bases have been focused on helping your end users and customers self-serve. In recent years, they’ve also taken on a new critical role: serving as a context so...
www.linkedin.com
February 12, 2025 at 8:42 PM
People should be making their websites / knowledgebases accessible for the visually impaired. But if it takes showing people that its good for AI too, at least it gets us a more accessible web for everyone.
www.linkedin.com/pulse/how-al...
#buildinpublic #accessibility #ai
www.linkedin.com/pulse/how-al...
#buildinpublic #accessibility #ai
Yao Ge, Yuting Guo, Sudeshna Das, Swati Rajwal, Selen Bozkurt, Abeed Sarker: HILGEN: Hierarchically-Informed Data Generation for Biomedical NER Using Knowledgebases and Large Language Models https://arxiv.org/abs/2503.04930 https://arxiv.org/pdf/2503.04930 https://arxiv.org/html/2503.04930
March 10, 2025 at 6:38 AM
Yao Ge, Yuting Guo, Sudeshna Das, Swati Rajwal, Selen Bozkurt, Abeed Sarker: HILGEN: Hierarchically-Informed Data Generation for Biomedical NER Using Knowledgebases and Large Language Models https://arxiv.org/abs/2503.04930 https://arxiv.org/pdf/2503.04930 https://arxiv.org/html/2503.04930
Alex Bateman: curation stops “model collapse” from AI. Curators can make judgements, knowledgebases are continually improving. #ismbeccb2025 #biocuration
July 24, 2025 at 8:13 AM
Alex Bateman: curation stops “model collapse” from AI. Curators can make judgements, knowledgebases are continually improving. #ismbeccb2025 #biocuration
data infrastructure work looks so much less sparkly & glamorous,
but I think those with long-term foresight will invest in systems to sustainably access, build,
democratize, and protect the human knowledgebases that AI companies are mining for near-term fortune in.
but I think those with long-term foresight will invest in systems to sustainably access, build,
democratize, and protect the human knowledgebases that AI companies are mining for near-term fortune in.
June 18, 2025 at 10:55 PM
data infrastructure work looks so much less sparkly & glamorous,
but I think those with long-term foresight will invest in systems to sustainably access, build,
democratize, and protect the human knowledgebases that AI companies are mining for near-term fortune in.
but I think those with long-term foresight will invest in systems to sustainably access, build,
democratize, and protect the human knowledgebases that AI companies are mining for near-term fortune in.
Needed knowledgebases and manpower drive decisions: Tapjoy does the math, moves from bare metal to OpenStack cloud
November 22, 2024 at 12:30 AM
Needed knowledgebases and manpower drive decisions: Tapjoy does the math, moves from bare metal to OpenStack cloud
getting together a lil band of gringos to practice speaking spanish together every week was such a good idea . we all have v different knowledgebases too so generally one of us can answer a question another has with 70% certainty relevant in at least one country LOL
September 17, 2024 at 12:11 AM
getting together a lil band of gringos to practice speaking spanish together every week was such a good idea . we all have v different knowledgebases too so generally one of us can answer a question another has with 70% certainty relevant in at least one country LOL
Giving a keynote on AutoML informed by LLM-powered knowledgebases for prescriptive analytics today at the @UF DAISY AI workshop. #automl #bioinformatics pop.pharmacy.ufl.edu/about/daisy-...
DAISY 2024 Workshop » Department of Pharmaceutical Outcomes & Policy » College of Pharmacy » University of Florida
DAISY is a highly interdisciplinary event whose main theme evolves every year based on top AI trends and challenges. Over the past four years, DAISY has covered personalized AI, bias in AI, and govern...
pop.pharmacy.ufl.edu
September 9, 2024 at 1:06 PM
Giving a keynote on AutoML informed by LLM-powered knowledgebases for prescriptive analytics today at the @UF DAISY AI workshop. #automl #bioinformatics pop.pharmacy.ufl.edu/about/daisy-...
Here is an important piece centered on how curated knowledgebases enable democratization in science. Tell us about how you use curated databases, such as
@reactome.bsky.social in your science. #opendata #openscience 🧬🖥️
@reactome.bsky.social in your science. #opendata #openscience 🧬🖥️
AI and the democratization of knowledge - Scientific Data
The solution of the longstanding “protein folding problem” in 2021 showcased the transformative capabilities of AI in advancing the biomedical sciences. AI was characterized as successfully learning f...
www.nature.com
March 14, 2024 at 5:35 PM
Here is an important piece centered on how curated knowledgebases enable democratization in science. Tell us about how you use curated databases, such as
@reactome.bsky.social in your science. #opendata #openscience 🧬🖥️
@reactome.bsky.social in your science. #opendata #openscience 🧬🖥️
Let the funders know you value the work done by biodata resources (databases, knowledgebases, ontologies, etc.) by signing the Global Biodata Coalition open letter globalbiodata.org/open-letter-... Keep the curated and integrated data free and accessible #bioinformatics #biocuration
OPEN LETTER CAMPAIGN - Global Biodata Coalition
Careers at the Global Biodata Coalition.
globalbiodata.org
December 4, 2024 at 3:37 PM
Let the funders know you value the work done by biodata resources (databases, knowledgebases, ontologies, etc.) by signing the Global Biodata Coalition open letter globalbiodata.org/open-letter-... Keep the curated and integrated data free and accessible #bioinformatics #biocuration
Don’t miss this FREE webinar that takes an in-depth look at two precision #oncology knowledgebases, CIViC and OncoKB, on August 26 at 11:00 AM ET. Featuring experts from McDonnell Genome Institute & @mskcancercenter.bsky.social. Details: tinyurl.com/yz96z54z #Genomics #MedicalGenetics
August 12, 2025 at 1:36 PM
Don’t miss this FREE webinar that takes an in-depth look at two precision #oncology knowledgebases, CIViC and OncoKB, on August 26 at 11:00 AM ET. Featuring experts from McDonnell Genome Institute & @mskcancercenter.bsky.social. Details: tinyurl.com/yz96z54z #Genomics #MedicalGenetics
MindsDB's Co-Founder and CEO, Jorge Torres, dives deep into how MindsDB #KnowledgeBases power complete #RAG solutions with reranking, data sync, and scalable retrieval. 🚀
mindsdb.com/blog/beyond-...
mindsdb.com/blog/beyond-...
Beyond Vector Search: Why MindsDB Knowledge Bases Matter for Complete RAG Solutions
Go beyond vector search—see how MindsDB Knowledge Bases power complete RAG solutions with reranking, data sync, and scalable retrieval.
mindsdb.com
May 7, 2025 at 3:30 PM
MindsDB's Co-Founder and CEO, Jorge Torres, dives deep into how MindsDB #KnowledgeBases power complete #RAG solutions with reranking, data sync, and scalable retrieval. 🚀
mindsdb.com/blog/beyond-...
mindsdb.com/blog/beyond-...
The CGC invites you to join Invited Session 4: Clinical variant interpretation knowledgebases in cancer genomics at the CGC 2025 Annual Meeting on August 6th. Click here to register: buff.ly/VDl3Hk4
#CGCAnnual2025 #genomics #cancer #research #genetics #clinicaltesting #bioinformatics #cytogenetics
#CGCAnnual2025 #genomics #cancer #research #genetics #clinicaltesting #bioinformatics #cytogenetics
July 21, 2025 at 1:04 PM
The CGC invites you to join Invited Session 4: Clinical variant interpretation knowledgebases in cancer genomics at the CGC 2025 Annual Meeting on August 6th. Click here to register: buff.ly/VDl3Hk4
#CGCAnnual2025 #genomics #cancer #research #genetics #clinicaltesting #bioinformatics #cytogenetics
#CGCAnnual2025 #genomics #cancer #research #genetics #clinicaltesting #bioinformatics #cytogenetics
Pro tip for getting your data into SGD and other knowledgebases: don't hide the data in the supplemental info in PDF format. Put it in Excel with stable identifiers like SGDIDs and systematic_names (ex. YFL039C) in addition to gene names. #yeast #modelOrganism #getYourDataOutGetCited
August 20, 2025 at 3:17 PM
Pro tip for getting your data into SGD and other knowledgebases: don't hide the data in the supplemental info in PDF format. Put it in Excel with stable identifiers like SGDIDs and systematic_names (ex. YFL039C) in addition to gene names. #yeast #modelOrganism #getYourDataOutGetCited
With no support whatsoever. Oh wait, the geniuses on the Linux and Libre Office knowledgebases are famously patient and easy going.
June 22, 2025 at 3:58 PM
With no support whatsoever. Oh wait, the geniuses on the Linux and Libre Office knowledgebases are famously patient and easy going.
Preprint alert 🚨 Do you use chatbots in your work or even build MCP servers and agentic systems yourself?
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
July 29, 2025 at 12:41 PM
Preprint alert 🚨 Do you use chatbots in your work or even build MCP servers and agentic systems yourself?
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
written on an old mechanical typewriter.
Gibson clearly had no knowledge of how much information could be stored in MBs- that 3 MB is supposedly massive, and very expensive… yet “microsofts” containing whole skillsets and knowledgebases could be obtained (relatively) quite inexpensively
Gibson clearly had no knowledge of how much information could be stored in MBs- that 3 MB is supposedly massive, and very expensive… yet “microsofts” containing whole skillsets and knowledgebases could be obtained (relatively) quite inexpensively
May 20, 2024 at 2:17 PM
written on an old mechanical typewriter.
Gibson clearly had no knowledge of how much information could be stored in MBs- that 3 MB is supposedly massive, and very expensive… yet “microsofts” containing whole skillsets and knowledgebases could be obtained (relatively) quite inexpensively
Gibson clearly had no knowledge of how much information could be stored in MBs- that 3 MB is supposedly massive, and very expensive… yet “microsofts” containing whole skillsets and knowledgebases could be obtained (relatively) quite inexpensively