#Polymorphisms
Investigating CYP2C9*3 Polymorphisms in Patients with Neuropsychological Disorders through Pharmacogenomics Testing https://www.medrxiv.org/content/10.64898/2025.12.03.25340647v1
December 8, 2025 at 11:40 PM
link 📈🤖
A Functional Approach to Testing Overall Effect of Interaction Between DNA Methylation and SNPs (Gansou, Oualkacha, Cremona et al) We introduce a test for the overall effect of interaction between DNA methylation and a set of single nucleotide polymorphisms (SNPs) on a quantitative phenot
December 8, 2025 at 4:11 PM
🧪 Introducing our research: MHCII antigen processing & presentation

We study how HLA-DM, HLA-DO and MHCII polymorphisms shape CD4⁺ T cell epitopes, linking the structural dynamics of peptide loading to immune recognition in infection, autoimmunity and cancer.

🔗 www.bcp.fu-berlin.de/en/chemie/bi...
December 8, 2025 at 8:40 AM
Genotyping by sequencing (Genetics 🧬)

In the field of genetic sequencing, genotyping by sequencing, also called GBS, is a method to discover single nucleotide polymorphisms in order to perform genotyping studies, such as genome-wide association studies. GBS uses restriction enzymes to reduce […]
Original post on mastodon.social
mastodon.social
December 8, 2025 at 7:21 AM
The impact of asparaginase phenotype-related single nucleotide polymorphisms on prognosis in pediatric B-cell precursor acute lymphoblastic leukemia.
Liu, Lixia et al.
Paper
Details
#AcuteLymphoblasticLeukemia #Pharmacogenomics #PediatricOncology
December 7, 2025 at 9:01 AM
📄DOI:https://doi.org/10.1186/s12903-025-05476-7 | Are genetic factors associated with head and neck carcinomas? This Meta-analysis focuses on the specific effects of several genes polymorphisms. #CancerResearch #Genetics www.rimpacts.com/rd/p?c=10088...
Association of Ercc2/Xpd Polymorphisms and the Risk of Head and Neck Carcinoma: A Systematic Review, Meta-Analysis, Trial Sequential Analysis, Network Analysis, and Functional Effects
Meta-analysis reveals rs1799793 polymorphism linked to head and neck cancer, underscoring genetic factors in carcinogenesis. Future studies needed for accuracy. #CancerResearch #Genetics
www.rimpacts.com
December 7, 2025 at 7:45 AM
www.sciencedirect.com/science/arti...

"It is encoded by the highly polymorphic IL1RN gene, with many known polymorphisms enhancing the serum/tissue levels of IL-1Ra, which are in linkage disequilibrium."
The SARS-CoV-2 trigger highlights host interleukin 1 genetics in Epstein-Barr virus reactivation
Studies in large cohorts exposed to the same triggers associated with Epstein-Barr virus (EBV) reactivation and the follow-up of post-acute outcomes m…
www.sciencedirect.com
December 5, 2025 at 4:57 PM
MULTIPLEX PCR FOR SP-D rs3088308 AND CD36 rs1761667 GENE POLYMORPHISMS IN ACTIVE TUBERCULOSIS AND LATENT TUBERCULOSIS PATIENTS https://www.medrxiv.org/content/10.64898/2025.12.03.25341527v1
December 5, 2025 at 12:41 AM
Quantum Polymorphisms Characterise Commutativity Gadgets, Resolving CSP Undecidability for Odd Cycles

Read more:
https://quantumzeitgeist.com/quantum-polymorphisms-characterise-commutativity-gadgets-resolving-csp-undecidability-odd/
Quantum Polymorphisms Characterise Commutativity Gadgets, Resolving CSP Undecidability For Odd Cycles
Researchers have extended complexity theory to encompass a broader range of game structures, definitively classifying the building blocks needed to verify computational processes and, as a result, proving that certain computational problems, specifically those linked to odd cycles, cannot be solved by computers.
quantumzeitgeist.com
December 4, 2025 at 12:35 PM
Ophthopedia Update: Association of polymorphisms in 17 loci with primary open-angle glaucoma in Chinese and Japanese: Purpose

To evaluate the associations of single-nucleotide polymorphisms (SNPs) in 17 loci with primary open-angle glaucoma (POAG) and subtypes… #Ophthalmology #Ophthotwitter #BJO
Association of polymorphisms in 17 loci with primary open-angle glaucoma in Chinese and Japanese
Purpose To evaluate the associations of single-nucleotide polymorphisms (SNPs) in 17 loci with primary open-angle glaucoma (POAG) and subtypes in Chinese and Japanese.Methods 17 SNPs in 17 genes, selected from a recent genome-wide association study, were genotyped in a Hong Kong Chinese cohort of 1093 POAG patients, including 557 high-tension glaucoma (HTG) and 536 normal-tension glaucoma (NTG) patients, and 584 controls. Seven SNPs showing association in the Hong Kong cohort were genotyped in a Shantou Chinese cohort of 155 POAG patients and 380 controls and an Osaka Japanese cohort of 254 POAG patients and 207 controls. The SNP-disease association of individual and pooled cohorts was analysed.Results In combined Chinese and Japanese subjects, three SNPs were significantly associated with POAG: AFAP1 rs938604 (Pmeta =6.40x10–5, OR=0.70), FNDC3B rs62283813 (Pmeta =0.0050, OR=1.24) and GAS7 rs9913911 (Pmeta =0.0060, OR=1.19). In subgroup analysis, these three SNPs showed stronger association with HTG: AFAP1 rs938604 (Pmeta =8.00x10–6, OR=0.59), FNDC3B rs62283813 (Pmeta =6.00x10–7, OR=1.55) and GAS7 rs9913911 (Pmeta =0.0040, OR=1.24). In addition, SPRED2 rs4414666 (Pmeta =8.00x10–4, OR=1.29) was also significantly associated with HTG. No SNP showed a significant association with NTG.Conclusions This study confirms AFAP1 rs938604, FNDC3B rs62283813, GAS7 rs9913911 and SPRED2 rs4414666 as HTG-specific loci in Chinese and Japanese populations. These findings provide new insights into the genetic architecture of POAG, highlighting distinct molecular mechanisms between HTG and NTG subtypes.
dlvr.it
December 3, 2025 at 5:43 PM
As expected from pop gen, the peaks inferred under positive selection have lower polymorphism and higher divergence (≈ MK test). The associated genes have a very weak association to negative selection on the coding sequence.
December 3, 2025 at 2:23 PM
As expected from pop gen, the peaks inferred under positive selection have lower polymorphism and higher divergence (≈ MK test). The associated genes have a very weak association to negative selection on the coding sequence.
December 3, 2025 at 2:16 PM
Evaluation of Apolipoprotein-A1 genetic polymorphisms as biomarkers for Chagas cardiomyopathy in patients from Cordoba, Argentina pubmed.ncbi.nlm.nih.gov/41324690/
December 3, 2025 at 3:58 AM
## Predictive Polymorphism Analysis via Bayesian Network Fusion for Personalized Pharmacogenomics

**Abstract:** Current personalized pharmacogenomics largely focuses on single-gene polymorphisms. This research introduces a novel framework, Predictive Polymorphism Analysis via Bayesian Network…
## Predictive Polymorphism Analysis via Bayesian Network Fusion for Personalized Pharmacogenomics
**Abstract:** Current personalized pharmacogenomics largely focuses on single-gene polymorphisms. This research introduces a novel framework, Predictive Polymorphism Analysis via Bayesian Network Fusion (PPABNF), that integrates multi-omic data (genomics, proteomics, metabolomics) with electronic health records (EHR) to predict individual drug response with significantly higher accuracy. PPABNF leverages Bayesian network fusion to identify complex, non-linear relationships between genetic predispositions, physiological states, and drug efficacy.
freederia.com
December 2, 2025 at 9:52 PM
Evaluation of Apolipoprotein-A1 genetic polymorphisms as biomarkers for Chagas cardiomyopathy in patients from Córdoba, Argentina pubmed.ncbi.nlm.nih.gov/41324690/
December 2, 2025 at 8:18 PM
Polymorphisms in IGK and IGL loci shape antibody light chain diversity, impacting immune responses. Discoveries made using advanced genomic techniques. PMID:41315391, Nat Commun 2025, @NatureComms https://doi.org/10.1038/s41467-025-66759-9 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Germline polymorphisms in the immunoglobulin kappa and lambda loci underpinning antibody light chain repertoire variability | Nature Communications
Variation in antibody (Ab) responses contributes to variable disease outcomes and therapeutic responsiveness, the determinants of which are incompletely understood. This study demonstrates that polymorphisms in immunoglobulin (IG) light chain loci dictate the composition of the Ab repertoire, establishing fundamental baseline differences that influence functional Ab-mediated responses. Using long-read genomic sequencing of the IG kappa (IGK) and IG lambda (IGL) loci, we resolve genetic variation, including structural variants, single nucleotide variants, and gene alleles. By integrating these genetic data with Ab repertoire profiling, we find that all forms of IG germline variation contribute to inter-individual gene usage differences for >70% of light chain genes in the repertoire, directly impacting the amino acids of expressed light chain transcripts. The genomic locations of usage-associated variants in both intergenic and coding regions indicate that IG polymorphisms modulate g
doi.org
December 2, 2025 at 4:10 AM
It would be great to have 2B6 isoenzyme as a part of any P-450 panels to determine polymorphisms (S-isomer pathway and risk for cardiotoxicity). This would enhance the safe use of the methadone in HAPC.
December 1, 2025 at 7:55 PM
Within-Subtype HIV-1 Polymorphisms and Their Impacts on Intact Proviral DNA Assay (IPDA) for Viral Reservoir Quantification www.mdpi.com/1999-4915/17... (open access) #HIV
December 1, 2025 at 4:59 PM
Lorenzo Ciardo, Gideo Joubert, Antoine Mottet: Quantum Polymorphisms and Commutativity Gadgets https://arxiv.org/abs/2511.23445 https://arxiv.org/pdf/2511.23445 https://arxiv.org/html/2511.23445
December 1, 2025 at 6:51 AM
Lorenzo Ciardo, Gideo Joubert, Antoine Mottet
Quantum Polymorphisms and Commutativity Gadgets
https://arxiv.org/abs/2511.23445
December 1, 2025 at 5:07 AM
Quantum Polymorphisms and Commutativity Gadgets
https://arxiv.org/pdf/2511.23445
Lorenzo Ciardo, Gideo Joubert, Antoine Mottet.
https://arxiv.org/abs/2511.23445
arXiv abstract link
arxiv.org
December 1, 2025 at 5:01 AM
PDCD1 gene single nucleotide polymorphisms and haplotypes are associated with higher risk of breast cancer development PubMed
PDCD1 gene single nucleotide polymorphisms and haplotypes are associated with higher risk of breast cancer development
CONCLUSION: These results indicate that the PDCD1 rs11568821 G>A polymorphism may contribute as a potential susceptibility and prognosis marker for breast cancer, especially for ER+/PR+ subtypes, considering the importance of PD-1 inhibitor effect over anti-tumor response.
dlvr.it
November 30, 2025 at 5:32 PM
## Deep Learning-Driven Predictive Modeling of Drug Metabolism Enzyme Polymorphisms’ Impact on In Vivo Drug Distribution

**Abstract:** This research proposes a novel deep learning framework, *PolyMetaNet*, for accurately predicting the impact of human drug metabolism enzyme polymorphisms (DMEPs)…
## Deep Learning-Driven Predictive Modeling of Drug Metabolism Enzyme Polymorphisms’ Impact on In Vivo Drug Distribution
**Abstract:** This research proposes a novel deep learning framework, *PolyMetaNet*, for accurately predicting the impact of human drug metabolism enzyme polymorphisms (DMEPs) on in vivo drug distribution. Polymorphisms in enzymes like CYP450s significantly influence drug clearance and bioavailability, often leading to interindividual variability in therapeutic outcomes. PolyMetaNet integrates pharmacokinetic (PK) modeling, genomic data representing DMEPs, and a transformer-based neural network architecture to provide personalized predictions of drug exposure profiles.
freederia.com
November 29, 2025 at 11:02 PM
GH1 Gene Polymorphisms Reveal Population-Level Allele Variation in North African (Clarias gariepinus) and Bighead Catfish (Clarias macrocephalus) https://pubmed.ncbi.nlm.nih.gov/41300718/
November 29, 2025 at 6:57 PM
Within-Subtype HIV-1 Polymorphisms and Their Impacts on Intact Proviral DNA Assay (IPDA) for Viral Reservoir Quantification https://pubmed.ncbi.nlm.nih.gov/41305478/
November 29, 2025 at 4:53 AM