phy_papers
@phypapers.bsky.social
Continuous feed for phylogenetics papers from PubMed, arXiv, bioRxiv, and EcoEvoRxiv. Run by @roblanfear.bsky.social
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Identification and analysis of the GRF gene family in peanut https://pubmed.ncbi.nlm.nih.gov/41457554/
December 30, 2025 at 4:17 PM
Identification and analysis of the GRF gene family in peanut https://pubmed.ncbi.nlm.nih.gov/41457554/
Heterocypris exodonta sp. nov. (Ostracoda, Cyprididae), morphological and molecular description of a high altitude asexual microcrustacean from the Nam Co region, Southern Tibetan Plateau https://pubmed.ncbi.nlm.nih.gov/41458140/
December 30, 2025 at 3:34 PM
Heterocypris exodonta sp. nov. (Ostracoda, Cyprididae), morphological and molecular description of a high altitude asexual microcrustacean from the Nam Co region, Southern Tibetan Plateau https://pubmed.ncbi.nlm.nih.gov/41458140/
Two new species of the Drawida japonica species complex (Oligochaeta, Moniligastridae) from East Asia delimited by integrative taxonomic methods https://pubmed.ncbi.nlm.nih.gov/41458142/
December 30, 2025 at 2:51 PM
Two new species of the Drawida japonica species complex (Oligochaeta, Moniligastridae) from East Asia delimited by integrative taxonomic methods https://pubmed.ncbi.nlm.nih.gov/41458142/
Discoveries of Dothideomycetes (Fungi) associated with pteridophytes in China https://pubmed.ncbi.nlm.nih.gov/41458571/
December 30, 2025 at 2:08 PM
Discoveries of Dothideomycetes (Fungi) associated with pteridophytes in China https://pubmed.ncbi.nlm.nih.gov/41458571/
The Complete Chloroplast Genome and Morphological Data Support Reinstatement of Sedum jinianum (Crassulaceae) as an Independent Species https://pubmed.ncbi.nlm.nih.gov/41459097/
December 30, 2025 at 1:24 PM
The Complete Chloroplast Genome and Morphological Data Support Reinstatement of Sedum jinianum (Crassulaceae) as an Independent Species https://pubmed.ncbi.nlm.nih.gov/41459097/
Deciphering the population dynamics and drug-resistance characteristics of extrapulmonary tuberculosis: genomic and clinical insights from a Chinese hospital https://pubmed.ncbi.nlm.nih.gov/41459162/
December 30, 2025 at 12:41 PM
Deciphering the population dynamics and drug-resistance characteristics of extrapulmonary tuberculosis: genomic and clinical insights from a Chinese hospital https://pubmed.ncbi.nlm.nih.gov/41459162/
Characterization of wastewater-derived bacteriophages infecting Enterococcus faecalis in Bulgaria: insights into the novel phage vB_SEF_8 https://pubmed.ncbi.nlm.nih.gov/41459203/
December 30, 2025 at 11:58 AM
Characterization of wastewater-derived bacteriophages infecting Enterococcus faecalis in Bulgaria: insights into the novel phage vB_SEF_8 https://pubmed.ncbi.nlm.nih.gov/41459203/
Host range expansion of Leucobacter holotrichiae: first evidence of mammalian infection and comparative genomic insights https://pubmed.ncbi.nlm.nih.gov/41459206/
December 30, 2025 at 11:15 AM
Host range expansion of Leucobacter holotrichiae: first evidence of mammalian infection and comparative genomic insights https://pubmed.ncbi.nlm.nih.gov/41459206/
Comprehensive analysis of the diatom genus Psammodictyon from Viet Nam: new species, molecular data, and fatty acid content https://pubmed.ncbi.nlm.nih.gov/41459218/
December 30, 2025 at 10:32 AM
Comprehensive analysis of the diatom genus Psammodictyon from Viet Nam: new species, molecular data, and fatty acid content https://pubmed.ncbi.nlm.nih.gov/41459218/
Genome-wide analysis of soybean cinnamyl alcohol dehydrogenase genes identifies GmCAD3 as a positive regulator of Fusarium oxysporum resistance https://pubmed.ncbi.nlm.nih.gov/41459444/
December 30, 2025 at 9:49 AM
Genome-wide analysis of soybean cinnamyl alcohol dehydrogenase genes identifies GmCAD3 as a positive regulator of Fusarium oxysporum resistance https://pubmed.ncbi.nlm.nih.gov/41459444/
Genome-wide characterization of WRKY family genes in four araceae species and their expression analysis in Amorphophallus konjac https://pubmed.ncbi.nlm.nih.gov/41459447/
December 30, 2025 at 9:06 AM
Genome-wide characterization of WRKY family genes in four araceae species and their expression analysis in Amorphophallus konjac https://pubmed.ncbi.nlm.nih.gov/41459447/
A gapless genome assembly of a Japonica variety 'BD8' provides insights into rice salt tolerance https://pubmed.ncbi.nlm.nih.gov/41459458/
December 30, 2025 at 8:23 AM
A gapless genome assembly of a Japonica variety 'BD8' provides insights into rice salt tolerance https://pubmed.ncbi.nlm.nih.gov/41459458/
Molecular evolution and diversity of isomerase-reductase clusters involved in the bacterial metabolism of glycosaminoglycans https://pubmed.ncbi.nlm.nih.gov/41459968/
December 30, 2025 at 7:40 AM
Molecular evolution and diversity of isomerase-reductase clusters involved in the bacterial metabolism of glycosaminoglycans https://pubmed.ncbi.nlm.nih.gov/41459968/
A genus-level classification of the ant subfamily Ponerinae (Hymenoptera, Formicidae) https://pubmed.ncbi.nlm.nih.gov/41458144/
December 30, 2025 at 6:57 AM
A genus-level classification of the ant subfamily Ponerinae (Hymenoptera, Formicidae) https://pubmed.ncbi.nlm.nih.gov/41458144/
A Recent Lineage Split in Cladium mariscus Preceding the Disjunction of Two Biodiversity Hotspots: Evidence From Plastid Genomes https://pubmed.ncbi.nlm.nih.gov/41459100/
December 30, 2025 at 6:14 AM
A Recent Lineage Split in Cladium mariscus Preceding the Disjunction of Two Biodiversity Hotspots: Evidence From Plastid Genomes https://pubmed.ncbi.nlm.nih.gov/41459100/
Phylogenomic study of Orostachys using Angiosperms353: polyphyly of subsections with taxonomic consequences https://pubmed.ncbi.nlm.nih.gov/41459474/
December 30, 2025 at 5:31 AM
Phylogenomic study of Orostachys using Angiosperms353: polyphyly of subsections with taxonomic consequences https://pubmed.ncbi.nlm.nih.gov/41459474/
Two new species of the Drawida japonica species complex (Oligochaeta, Moniligastridae) from East Asia delimited by integrative taxonomic methods https://pubmed.ncbi.nlm.nih.gov/41458142/
December 30, 2025 at 4:48 AM
Two new species of the Drawida japonica species complex (Oligochaeta, Moniligastridae) from East Asia delimited by integrative taxonomic methods https://pubmed.ncbi.nlm.nih.gov/41458142/
A genus-level classification of the ant subfamily Ponerinae (Hymenoptera, Formicidae) https://pubmed.ncbi.nlm.nih.gov/41458144/
December 30, 2025 at 4:05 AM
A genus-level classification of the ant subfamily Ponerinae (Hymenoptera, Formicidae) https://pubmed.ncbi.nlm.nih.gov/41458144/
A circovirus-like genomic sequence with unique architecture and phylogenetic relatedness to human-linked viral lineages https://pubmed.ncbi.nlm.nih.gov/41459151/
December 30, 2025 at 3:22 AM
A circovirus-like genomic sequence with unique architecture and phylogenetic relatedness to human-linked viral lineages https://pubmed.ncbi.nlm.nih.gov/41459151/
Drivers of taxonomic, phylogenetic, and functional diversity of waterbirds in urban wetlands https://pubmed.ncbi.nlm.nih.gov/41459310/
December 30, 2025 at 2:39 AM
Drivers of taxonomic, phylogenetic, and functional diversity of waterbirds in urban wetlands https://pubmed.ncbi.nlm.nih.gov/41459310/
Efficient algorithms for simulating sequences along a phylogenetic tree https://pubmed.ncbi.nlm.nih.gov/41460170/
December 30, 2025 at 1:56 AM
Efficient algorithms for simulating sequences along a phylogenetic tree https://pubmed.ncbi.nlm.nih.gov/41460170/
Phylogenomic study of Orostachys using Angiosperms353: polyphyly of subsections with taxonomic consequences https://pubmed.ncbi.nlm.nih.gov/41459474/
December 30, 2025 at 1:13 AM
Phylogenomic study of Orostachys using Angiosperms353: polyphyly of subsections with taxonomic consequences https://pubmed.ncbi.nlm.nih.gov/41459474/
Evolutionary persistence and divergence of the tdk killer meiotic driver family https://www.biorxiv.org/content/10.64898/2025.12.28.696746v1
December 30, 2025 at 12:30 AM
Evolutionary persistence and divergence of the tdk killer meiotic driver family https://www.biorxiv.org/content/10.64898/2025.12.28.696746v1
MicroGenomer: A Foundation Model for Transferable Microbial Genome Representations Enabling Multi-scale Genomic Understanding and Ecophysiological Trait Prediction https://www.biorxiv.org/content/10.64898/2025.12.28.696777v1
December 29, 2025 at 11:47 PM
MicroGenomer: A Foundation Model for Transferable Microbial Genome Representations Enabling Multi-scale Genomic Understanding and Ecophysiological Trait Prediction https://www.biorxiv.org/content/10.64898/2025.12.28.696777v1
yallHap: Modern Y-chromosome haplogroup inference with probabilistic scoring and ancient DNA support https://www.biorxiv.org/content/10.64898/2025.12.28.696719v1
December 29, 2025 at 11:04 PM
yallHap: Modern Y-chromosome haplogroup inference with probabilistic scoring and ancient DNA support https://www.biorxiv.org/content/10.64898/2025.12.28.696719v1