what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
#microscopy #ImageJ #FluorescenceFriday #microscopyMonday
imagej.net/plugins/imag...
#microscopy #ImageJ #FluorescenceFriday #microscopyMonday
imagej.net/plugins/imag...
DICOM slice position (0020,0032) and not slice thickness (0018,0050) fields are used to determine the size of the image stack.
DICOM slice position (0020,0032) and not slice thickness (0018,0050) fields are used to determine the size of the image stack.
Don't know where to start?
We (@lankylaste.bsky.social, Alicja Skórkowska and Sara Salgueiro Torres) have added a step-by-step tutorial to the wiki to get you started.
Thanks @ctrue.bsky.social for adding!
imagej.github.io/tutorials/ba...
I can’t find new bugs and ideas by now so I need your help to please test them in your machines and report bugs, feedbacks and ideas! forum.image.sc/t/looking-fo...
We're going through the history of #Fiji and #ImageJ and the big plan behind to Pavel's current projects 🤩
We're going through the history of #Fiji and #ImageJ and the big plan behind to Pavel's current projects 🤩
All the new commands are in Fiji under Plugins > BoneJ > Plus and are automatically installed and updated when you run the ImageJ Updater (Help > Update...). Work is ongoing - your feedback is essential!
The fabric tensor expresses the scale and orientation of textures like trabecular bone and other porous materials.
Runs on GPUs from Intel, NVIDIA and AMD, 10-100× faster than the classic version 🔥🔥🔥
Get a token from bonej.org/shop to try it out!
All the new commands are in Fiji under Plugins > BoneJ > Plus and are automatically installed and updated when you run the ImageJ Updater (Help > Update...). Work is ongoing - your feedback is essential!
Today's new release lets BoneJ+ run on Intel GPUs, which are very common in laptops, in addition to NVIDIA and AMD GPUs. Even antique, 10-year-old ones are working.
Ellipsoid Factor+ is also going 1.5-3× faster.
Just let the ImageJ/Fiji updater run!
Today's new release lets BoneJ+ run on Intel GPUs, which are very common in laptops, in addition to NVIDIA and AMD GPUs. Even antique, 10-year-old ones are working.
Ellipsoid Factor+ is also going 1.5-3× faster.
Just let the ImageJ/Fiji updater run!
本報導整理與說明由臺大顯微影像核心(NTU Imaging Core)發佈之教學內容,主講者羅安琦針對「AI、機器學習(ML)與深度學習(DL)在生物影像分析(BIA)上的應用」做出系統性的介紹與實作示範。文章以新聞報導的語氣呈現要點,並補充背景、技術原理、實務操作建議與常見參數調校策略,方便研究者在使用 ImageJ/Fiji 與相關深度學習工具時有明確的判斷與執行策略。…
本報導整理與說明由臺大顯微影像核心(NTU Imaging Core)發佈之教學內容,主講者羅安琦針對「AI、機器學習(ML)與深度學習(DL)在生物影像分析(BIA)上的應用」做出系統性的介紹與實作示範。文章以新聞報導的語氣呈現要點,並補充背景、技術原理、實務操作建議與常見參數調校策略,方便研究者在使用 ImageJ/Fiji 與相關深度學習工具時有明確的判斷與執行策略。…
Sign up here: buff.ly/o64cW9Y
1. Basic Microscopic Image Analysis
2. Automate Analyses with #ImageJ #Macro #Scripting
3. Transform Pixels to Patterns with #MachineLearning
#Fiji #BioVoxxel
Any Questions? -> DM me Bsky
Sign up here: buff.ly/o64cW9Y
1. Basic Microscopic Image Analysis
2. Automate Analyses with #ImageJ #Macro #Scripting
3. Transform Pixels to Patterns with #MachineLearning
#Fiji #BioVoxxel
Any Questions? -> DM me Bsky
Guess tomorrow I get to play "find the plugin for ImageJ/FIJI"
I bet @engineeringjoy.bsky.social can probably do this kind of image processing in her sleep. It is just a bit too much math for me and PS/LR aren't helpful.
Guess tomorrow I get to play "find the plugin for ImageJ/FIJI"
I bet @engineeringjoy.bsky.social can probably do this kind of image processing in her sleep. It is just a bit too much math for me and PS/LR aren't helpful.
Take image analysis automation to the next level. Without any prior programming knowledge, this course will take you the fear if hights and complexity of scripting step-by-step
youtu.be/OaXdxMdaFUE
#ImageJ #Fiji #Macros #Programming
Take image analysis automation to the next level. Without any prior programming knowledge, this course will take you the fear if hights and complexity of scripting step-by-step
youtu.be/OaXdxMdaFUE
#ImageJ #Fiji #Macros #Programming
Learn all the basics of #imagesegmentation to manage flexible #automation of area and object extraction including #qualitycontrol for less bias and reduced errors.
youtu.be/s2T3B5Q8A7c
#ImageJ #Fiji #bioimageanalysis #microscopy
Learn all the basics of #imagesegmentation to manage flexible #automation of area and object extraction including #qualitycontrol for less bias and reduced errors.
youtu.be/s2T3B5Q8A7c
#ImageJ #Fiji #bioimageanalysis #microscopy
🥾 Hiker: Basic Microscopic Image Processing and Analysis
🏔 Climber: ImageJ Macro Scripting
🧗 Free Climber: Applied #machinelearning
Choose your challenge 👉 www.biovoxxel.de/individual-w...
#Fiji #ImageJ
🥾 Hiker: Basic Microscopic Image Processing and Analysis
🏔 Climber: ImageJ Macro Scripting
🧗 Free Climber: Applied #machinelearning
Choose your challenge 👉 www.biovoxxel.de/individual-w...
#Fiji #ImageJ
The ultimate #imageanalysis #hattrick is here 🧠🔬✨
www.biovoxxel.de/individual-w...
Read the 🧵👇
All necessary info and links at the end !
#bioimaging #learning #science #lifescience #microscopy #fiji #imagej #machinelearning #deeplearning
The ultimate #imageanalysis #hattrick is here 🧠🔬✨
www.biovoxxel.de/individual-w...
Read the 🧵👇
All necessary info and links at the end !
#bioimaging #learning #science #lifescience #microscopy #fiji #imagej #machinelearning #deeplearning
Hopefully they gave the tool UI a look; way too many things in imagej don't resize nicely. If I want to widen the levels tool window, for example, the actual active bits don't grow to the new size. Fiji/ImageJ in general just strikes me as a pain in the butt.
Hopefully they gave the tool UI a look; way too many things in imagej don't resize nicely. If I want to widen the levels tool window, for example, the actual active bits don't grow to the new size. Fiji/ImageJ in general just strikes me as a pain in the butt.
How to get started? Check out the training manual: doi.org/10.5281/zeno...
How to get started? Check out the training manual: doi.org/10.5281/zeno...
Automated structural detection for #ImageJ & #FIJI, from nano to macro ✨🐘. No training data, no bias - texture analysis with GPU acceleration!⚡️
Brainchild of @afonsomendes92.bsky.social and adventure w @christlet.bsky.social lab + friends.
Check: www.nature.com/articles/s41...
Automated structural detection for #ImageJ & #FIJI, from nano to macro ✨🐘. No training data, no bias - texture analysis with GPU acceleration!⚡️
Brainchild of @afonsomendes92.bsky.social and adventure w @christlet.bsky.social lab + friends.
Check: www.nature.com/articles/s41...
💡 SAMJ is a new ImageJ/Fiji plugin using Segment Anything (SAM) for fast, interactive segmentation — no GPU needed, one-click install, real-time results.
🔬 Perfect for large biomedical images.
arxiv.org/abs/2506.02783
#AI #Bioimaging #ImageJ #OpenSource
💡 SAMJ is a new ImageJ/Fiji plugin using Segment Anything (SAM) for fast, interactive segmentation — no GPU needed, one-click install, real-time results.
🔬 Perfect for large biomedical images.
arxiv.org/abs/2506.02783
#AI #Bioimaging #ImageJ #OpenSource
Will make more #stickers, until then feel free to re-use my template CC0 FTW
#woodstock #FIJI #Bioimages #ImageJ #BioVis
Will make more #stickers, until then feel free to re-use my template CC0 FTW
#woodstock #FIJI #Bioimages #ImageJ #BioVis