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pm-lab.bsky.social
pm-lab
@pm-lab.bsky.social
#Mitochondria, #MitochondrialDisease, #BrainMetabolism, Stroke, and #CellDeath researcher, Translational Neurologist, Clinician Scientist, Einstein Junior Fellow 🔬🧠🧪👨‍⚕️
Pinned
🔬🧪🧠⚡ I am extremely happy to announce that our paper on imaging #brain glucose #metabolism using metabolic #MRI in a 🐀 rat model of ischemic stroke is now published in #JCBFM (journals.sagepub.com/doi/10.1177/...). #OpenAccess #OpenData Check the🧵 🤓 #NeuroSky ⏬⏬
🔬🧪🧠⚡ I am extremely happy to announce that our paper on imaging #brain glucose #metabolism using metabolic #MRI in a 🐀 rat model of ischemic stroke is now published in #JCBFM (journals.sagepub.com/doi/10.1177/...). #OpenAccess #OpenData Check the🧵 🤓 #NeuroSky ⏬⏬
July 9, 2025 at 1:30 PM
Reposted by pm-lab
"This symposium explores the power of microscopy imaging as a data-rich resource for quantifying cellular phenotypes, with a strong focus on high-content imaging techniques such as Cell Painting and their applications in drug discovery and basic cell biology"

cytodata25.eu-openscreen.eu
April 17, 2025 at 4:13 PM
Reposted by pm-lab
New preprint: How do cells measure time? In human development, pluripotent epiblast cells pause for about two weeks before differentiating into more specialised cell types. We show that this timing is controlled by a transcriptional clock that works like an hourglass. www.biorxiv.org/content/10.1...
A transcriptional clock of the human pluripotency transition
Developmental timing differs strikingly between mammals. All embryonic and some placental lineages emerge from the pluripotent epiblast in a temporally defined sequence, lasting about two weeks in the...
www.biorxiv.org
March 19, 2025 at 11:30 AM
Reposted by pm-lab
*Please repost* @sjgreenwood.bsky.social and I just launched a new personalized feed (*please pin*) that we hope will become a "must use" for #academicsky. The feed shows posts about papers filtered by *your* follower network. It's become my default Bluesky experience bsky.app/profile/pape...
March 10, 2025 at 6:14 PM
I am very pleased to have contributed to this work. Hopefully, it finds wide recognition. @fmp-berlin.de
pubs.acs.org/doi/full/10....
Highly Specific Miniaturized Fluorescent Monoacylglycerol Lipase Probes Enable Translational Research
Monoacylglycerol lipase (MAGL) is the pivotal catabolic enzyme responsible for signal termination in the endocannabinoid system. Inhibition of MAGL offers unique advantages over the direct activation of cannabinoid receptors in treating cancer, metabolic disorders, and inflammatory diseases. Although specific fluorescent molecular imaging probes are commonly used for the real-time analysis of the localization and distribution of drug targets in cells, they are almost invariably composed of a linker connecting the pharmacophore with a large fluorophore. In this study, we have developed miniaturized fluorescent probes targeting MAGL by incorporating a highly fluorescent boron-dipyrromethene (BODIPY) moiety into the inhibitor structure that interacts with the MAGL active site. These miniaturized fluorescent probes exhibit favorable drug-like properties such as high solubility and permeability, picomolar potency for MAGL across various species, and high cell selectivity and specificity. A range of translational investigations were conducted, including cell-free fluorescence polarization assays, fluorescence-activated cell sorting analysis, and confocal fluorescence microscopy of live cancer cells, live primary neurons, and human-induced pluripotent stem cell-derived brain organoids. Furthermore, the application of red-shifted analogs or 18F positron emission labeling illustrated the significant versatility and adaptability of the fluorescent ligands in various experimental contexts.
pubs.acs.org
March 11, 2025 at 12:57 PM
Still time to apply for this PostDoc opportunity 👇👇👇
🚨 Job Alert 🚨🔬🧪👩‍💻🖥️ Are you interested in #BioimageAnalysis #ComputerVision #AI #ML methods for the #LifeSciences? Do you want to work on #DigitalPathology of tissues, cells, organelles? Check out this #PostDoc opportunity in a collaboration with Jens Rittscher from @oxengsci.bsky.social @ox.ac.uk
Research assistant / Post-doctoral fellow image analysis - Center for Stroke Research DM.16.25
full-time | 21.02.2025 | Campus Charité Mitte
karriere.charite.de
March 10, 2025 at 8:37 PM
Reposted by pm-lab
The next-generation open-source "Benchtop" #mesoSPIM light-sheet microscope, with open access to everyone. Find the detailed blueprints on how to build your own, and examples of applications, from neuroscience to astrophysics!
link.springer.com/article/10.1...
Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples - Nature Communications
In 2015, we launched the mesoSPIM initiative, an open-source project for making light-sheet microscopy of large cleared tissues more accessible. Meanwhile, the demand for imaging larger samples at hig...
link.springer.com
January 20, 2025 at 10:07 AM
🚨 Job Alert 🚨🔬🧪👩‍💻🖥️ Are you interested in #BioimageAnalysis #ComputerVision #AI #ML methods for the #LifeSciences? Do you want to work on #DigitalPathology of tissues, cells, organelles? Check out this #PostDoc opportunity in a collaboration with Jens Rittscher from @oxengsci.bsky.social @ox.ac.uk
Research assistant / Post-doctoral fellow image analysis - Center for Stroke Research DM.16.25
full-time | 21.02.2025 | Campus Charité Mitte
karriere.charite.de
February 7, 2025 at 8:47 AM
Reposted by pm-lab
The Economist covered our "Strain on scientific publishing" paper.

What is this all about?

We collectively churn out more & more papers *per scientist*, an increasing pace, in a rapidly changing publication landscape.

Why? How? Want to make sense of this? 🧵

www.economist.com/science-and-...
Scientific publishers are producing more papers than ever
Concerns about some of their business models are building
www.economist.com
November 23, 2024 at 2:17 PM
🚨🚨🚨 #Preprint Alert 🚨🚨🚨
🔬🧪🧠⚡ I am thrilled to share our recent preprint on imaging #brain glucose #metabolism using metabolic #MRI in a rat model of ischemic stroke. Great collaboration with @pboehmsturm.bsky.social @docbeardface.bsky.social and many more sadly all not on here. A brief 🧵 #NeuroSky
2-deoxy-D-glucose chemical exchange-sensitive spin-lock MRI of cerebral glucose metabolism after stroke in the rat
Rapid breakdown of cerebral glucose metabolism is a hallmark in stroke pathology. Metabolic activity delineates the penumbra from the infarct core, representing tissue that is potentially salvageable ...
doi.org
February 6, 2025 at 4:15 PM
Reposted by pm-lab
⚠️THREAD OF ALL SCIENCE-RELATED STARTER PACKS! ⚠️

🔄Share to help people finding its topic/field

- STRUCTURAL BIOLOGY

Structural Biology 1: bsky.app/starter-pack...
Structural Biology 2: bsky.app/starter-pack...
Crystallography: bsky.app/starter-pack...
Synchrotron&CryoEM: bsky.app/starter-pack...
November 17, 2024 at 6:48 PM
Reposted by pm-lab
New preprint: are deep neural networks just complicated curve fitters or can they show emergent behavior that is independent of the data? We show that training deep neural networks gives rise to emergent weight morphologies independent of the training data.

arxiv.org/abs/2501.05550
January 14, 2025 at 11:10 AM
Reposted by pm-lab
Post-doc opportunity in my lab at JIC, on the Bacillus subtilis circadian clock and interactions with plants. Part of ERC Synergy programme "MicroClock", collaborating with @evolvedbiofilm.bsky.social and Martha Merrow #chronobiology @microclockerc.bsky.social www.jic.ac.uk/vacancies/po...
January 13, 2025 at 12:35 PM
Reposted by pm-lab
New #mito peeps keep joining! Don't miss out on their awesome stuff!

go.bsky.app/J6Bu5fL
#StarterPack for the #Mitochondria research community! Very much a work in progress, comment below/reach out to be added!

#Mito #Mitochondriac

go.bsky.app/J6Bu5fL
January 9, 2025 at 9:47 AM
Reposted by pm-lab
Latest articles on cell death.
Bcl-2 family proteins, death receptors, necroptosis, ferroptosis, pyroptosis, clearance of apoptotic cells, caspases and more!
Apolist
celldeath.wordpress.com/2024/12/23/a...
ApoList Nov-Dec 2024
Bcl-2 family proteins Inhibition of BAK-mediated apoptosis by the BH3-only protein BNIP5 – Sebastian Rühl, Zhenrui Li, Shagun Srivastava, Luigi Mari, Clifford S. Guy, Mao Yang, Tudor Moldovea…
celldeath.wordpress.com
December 23, 2024 at 4:33 PM
Reposted by pm-lab
These studies are so important. Well done to the authors and the journal for publishing it. This certainly applies to so many antibodies. Companies selling antibodies should do and provide the right controls before commercialisation.

www.nature.com/articles/s41...
Why Bax detection in >1400 publications might be flawed - Cell Death & Disease
Cell Death & Disease - Why Bax detection in >1400 publications might be flawed
www.nature.com
December 25, 2024 at 5:39 PM
Reposted by pm-lab
Why Bax detection in >1400 publications might be flawed?

The culprit: a poorly validated antibody that went unchecked for years … until recently !!!
Just stumbled on this 💎 of a paper at my end-of-the-year review of the #apoptosis #Bax #Bcl2 literature (i.e., trying to get that last paper out). Can't stress enough how glad I am that this gets reported and has a venue in a high profile journal! 🔬🧪👍👍👍 @natureportfolio.bsky.social
Why Bax detection in >1400 publications might be flawed - Cell Death & Disease
Cell Death & Disease - Why Bax detection in >1400 publications might be flawed
www.nature.com
December 25, 2024 at 10:28 AM
Reposted by pm-lab
Why Bax detection in >1400 publications might be flawed?

The culprit: a poorly validated antibody that went unchecked for years … until recently !!!
December 25, 2024 at 10:27 AM
Just stumbled on this 💎 of a paper at my end-of-the-year review of the #apoptosis #Bax #Bcl2 literature (i.e., trying to get that last paper out). Can't stress enough how glad I am that this gets reported and has a venue in a high profile journal! 🔬🧪👍👍👍 @natureportfolio.bsky.social
Why Bax detection in >1400 publications might be flawed - Cell Death & Disease
Cell Death & Disease - Why Bax detection in >1400 publications might be flawed
www.nature.com
December 23, 2024 at 2:22 PM
Reposted by pm-lab
REPORT

For the last four years Austria has been measuring the online dissemination of both its open and closed publications, using the Altmetric Explorer to evaluate hundreds of thousands of items published nationally. Their report is now out, also translated into English.
The visibility of open access publications – Results of sub-project 5 of Austrian Transition to Open Access 2 (AT2OA2)
Subproject 5 - Visibility of Open Access Publications of Austrian Transition to Open Access 2 (AT2OA2) was dedicated, among other things, to whether Open Access, in addition to improving the availabil...
zenodo.org
December 23, 2024 at 10:13 AM
Reposted by pm-lab
🎁 As we wrap up 2024, let's review the most significant stroke research breakthroughs in each month, from practice changing updates to glimpses of the future.

After discovering The Precarious Painter and "chopperlysis," stroke care will never be the same 👇
December 18, 2024 at 6:55 PM
Reposted by pm-lab
Created a second stem cell biology starter pack, as the first one was full.

Let me know if you would like to be added!

go.bsky.app/UG3eYwU
December 15, 2024 at 1:23 PM
December 4, 2024 at 7:08 PM
Reposted by pm-lab
My #BioimageTooloftheDay is an easy one: Cellpose by @computingnature.neuromatch.social.ap.brid.gy and colleagues
An awesome DL-segmentation network to segment cells from microscopy images
www.nature.com/articles/s41...

When we do not use StarDist, we use Cellpose 😀
Cellpose 2.0: how to train your own model - Nature Methods
Cellpose 2.0 improves cell segmentation by offering pretrained models that can be fine-tuned using a human-in-the-loop training pipeline and fewer than 1,000 user-annotated regions of interest.
www.nature.com
November 15, 2024 at 4:40 PM