MultiQC
@multiqc.info
Open-source tool to simplify and streamline quality control analysis, from @seqera.io
Reposted by MultiQC
🎉 Celebrating 10 years of @multiqc.info! 📊 The numbers speak volumes:
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
October 24, 2025 at 4:13 PM
🎉 Celebrating 10 years of @multiqc.info! 📊 The numbers speak volumes:
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
Reposted by MultiQC
🎉Celebrating 10 Years of @multiqc.info
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
August 5, 2025 at 7:44 AM
🎉Celebrating 10 Years of @multiqc.info
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
🎉 Today marks 10 years since the very first @multiqc.info commit!
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
August 4, 2025 at 8:03 PM
🎉 Today marks 10 years since the very first @multiqc.info commit!
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
Reposted by MultiQC
9/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
multiqc.info
June 30, 2025 at 1:15 PM
9/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Did you see, #MultiQC v1.28 went out a few days ago!
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
a man in a red sweater is dancing in a living room in front of a fireplace .
ALT: a man in a red sweater is dancing in a living room in front of a fireplace .
media.tenor.com
April 9, 2025 at 8:21 AM
Did you see, #MultiQC v1.28 went out a few days ago!
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
Reposted by MultiQC
🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa...
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
multiqc.info
January 25, 2025 at 2:15 PM
🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa...
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
Reposted by MultiQC
One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful!
seqera.io/multiqc/
github.com/MultiQC/Mult...
seqera.io/multiqc/
github.com/MultiQC/Mult...
MultiQC | Seqera
Aggregate results from bioinformatics analyses across many samples into a single report
seqera.io
January 28, 2025 at 8:43 AM
One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful!
seqera.io/multiqc/
github.com/MultiQC/Mult...
seqera.io/multiqc/
github.com/MultiQC/Mult...
Reposted by MultiQC
February 14, 2025 at 9:46 AM
Reposted by MultiQC
Read the blog post: hubs.la/Q033Kjp30
AI Summaries now available in MultiQC | Seqera
AI Summaries allow MultiQC users to quickly generate summaries of their reports, offering insights without needing to comb through every detail manually.
hubs.la
January 23, 2025 at 3:25 PM
Read the blog post: hubs.la/Q033Kjp30
Reposted by MultiQC
The gold standard in #bioinformatics reporting just got even better! #AI Summaries are now available in @multiqc.info🎉
Find out more: hubs.la/Q033Kjp30
Find out more: hubs.la/Q033Kjp30
January 23, 2025 at 3:25 PM
The gold standard in #bioinformatics reporting just got even better! #AI Summaries are now available in @multiqc.info🎉
Find out more: hubs.la/Q033Kjp30
Find out more: hubs.la/Q033Kjp30
Reposted by MultiQC
One of the cooler things I saw at the Nextflow summit a few months ago. Can't wait to try this.
January 23, 2025 at 3:29 PM
One of the cooler things I saw at the Nextflow summit a few months ago. Can't wait to try this.
MultiQC v1.27 was released yesterday. It includes one major new feature:
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
January 23, 2025 at 3:33 PM
MultiQC v1.27 was released yesterday. It includes one major new feature:
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
Reposted by MultiQC
I'm excited to see my contributions made it into this version! It was a lot easier to add new modules than I expected. If anyone is wishing a tool was supported, you should just try adding it.
🆕 10 new modules supporting new tools in this release:
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
December 23, 2024 at 2:57 AM
I'm excited to see my contributions made it into this version! It was a lot easier to add new modules than I expected. If anyone is wishing a tool was supported, you should just try adding it.
Reposted by MultiQC
Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social
🆕 10 new modules supporting new tools in this release:
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
December 22, 2024 at 11:29 AM
Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social
Reposted by MultiQC
Nice tiny Xmas gift in the new release 🎄. Percolator feature weights can be simply plotted now with multiQC!
December 22, 2024 at 11:50 AM
Nice tiny Xmas gift in the new release 🎄. Percolator feature weights can be simply plotted now with multiQC!
Sneaking a little holiday gift in at the last moment: @multiqc.info v1.26 just released!
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
December 22, 2024 at 11:12 AM
Sneaking a little holiday gift in at the last moment: @multiqc.info v1.26 just released!
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
Reposted by MultiQC
I'm looking for a nice pull-quote about @multiqc.info that we can use in some @seqera.io materials, if anyone fancies dropping something nice into the comments as an early Christmas present for me, that would be much appreciated! 🙏🏻 😅
December 16, 2024 at 10:59 AM
I'm looking for a nice pull-quote about @multiqc.info that we can use in some @seqera.io materials, if anyone fancies dropping something nice into the comments as an early Christmas present for me, that would be much appreciated! 🙏🏻 😅
Reposted by MultiQC
🍎 Master the art of Quality Control for NGS data with @galaxytraining.bsky.social! Learn how to assess, improve, and summarize sequencing quality using tools like FASTQC, Cutadapt, and MultiQC.
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...
Sequence analysis / Quality Control / Hands-on: Quality Control
Analyses of sequences
training.galaxyproject.org
October 23, 2024 at 7:10 PM
🍎 Master the art of Quality Control for NGS data with @galaxytraining.bsky.social! Learn how to assess, improve, and summarize sequencing quality using tools like FASTQC, Cutadapt, and MultiQC.
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...
Reposted by MultiQC
A highlight of this release is improved config parsing, with better support for environment variables 💫
Every MultiQC config option can now be set via an env var, and YAML configs can interpolate env vars into their strings:
Every MultiQC config option can now be set via an env var, and YAML configs can interpolate env vars into their strings:
November 17, 2023 at 3:04 PM
A highlight of this release is improved config parsing, with better support for environment variables 💫
Every MultiQC config option can now be set via an env var, and YAML configs can interpolate env vars into their strings:
Every MultiQC config option can now be set via an env var, and YAML configs can interpolate env vars into their strings:
Just out: @multiqc.info v1.25.2 🎉
This patch release fixes a whole host of bugs, the most important one being for #bcl2fastq 🐛
There are also a host of small additions sneaking in for #ngsbits, #picard, #Nanostat, #Samtools and more - so well worth the update!
github.com/MultiQC/Mult...
This patch release fixes a whole host of bugs, the most important one being for #bcl2fastq 🐛
There are also a host of small additions sneaking in for #ngsbits, #picard, #Nanostat, #Samtools and more - so well worth the update!
github.com/MultiQC/Mult...
Release v1.25.2 · MultiQC/MultiQC
MultiQC v1.25.2 - 2024-11-20
Multiple bug fixes and minor updates.
Updates
Add natural sort for sample sorting (#2959)
Custom content: for plot_type: image, support custom_data config with section...
github.com
November 23, 2024 at 3:58 PM
Just out: @multiqc.info v1.25.2 🎉
This patch release fixes a whole host of bugs, the most important one being for #bcl2fastq 🐛
There are also a host of small additions sneaking in for #ngsbits, #picard, #Nanostat, #Samtools and more - so well worth the update!
github.com/MultiQC/Mult...
This patch release fixes a whole host of bugs, the most important one being for #bcl2fastq 🐛
There are also a host of small additions sneaking in for #ngsbits, #picard, #Nanostat, #Samtools and more - so well worth the update!
github.com/MultiQC/Mult...
Reposted by MultiQC
Hey! I recently started blogging again at blog.stephenturner.us I used to write at gettinggeneticsdone.blogspot.com. Check out @ewels.bsky.social's talk on @multiqc.info at this year's @nextflow.io summit. I wrote about it here: blog.stephenturner.us/p/nextflow-s...
Paired Ends | Substack
Bioinformatics, computational biology, and data science updates from the field. Occasional posts on programming. Click to read Paired Ends, a Substack publication with thousands of subscribers.
blog.stephenturner.us
November 14, 2024 at 2:38 PM
Hey! I recently started blogging again at blog.stephenturner.us I used to write at gettinggeneticsdone.blogspot.com. Check out @ewels.bsky.social's talk on @multiqc.info at this year's @nextflow.io summit. I wrote about it here: blog.stephenturner.us/p/nextflow-s...
Hello world! Setting up a new account here to post updates about new releases and other things.
If you're new to @multiqc.info then check out seqera.io/multiqc/ to see what it's all about and have a go at running MultiQC in your browser!
If you're new to @multiqc.info then check out seqera.io/multiqc/ to see what it's all about and have a go at running MultiQC in your browser!
MultiQC | Seqera
Aggregate results from bioinformatics analyses across many samples into a single report
seqera.io
November 13, 2024 at 8:24 PM
Hello world! Setting up a new account here to post updates about new releases and other things.
If you're new to @multiqc.info then check out seqera.io/multiqc/ to see what it's all about and have a go at running MultiQC in your browser!
If you're new to @multiqc.info then check out seqera.io/multiqc/ to see what it's all about and have a go at running MultiQC in your browser!