That and more! Custom Python scripts work too, you might like this quick recap of new features from in a short talk from 2024: youtu.be/-qwmeHyY6T0?...

I'm incredibly grateful for the amazing community that's contributed, provided feedback, and helped shape it into what it is today. This journey wouldn't have happened without you all, a testament to the power of #openscience

Here's to the next decade of making #bioinformatics QC beautiful! 🧬

9/
Tools you need:
FastQC: first defense

MultiQC: overview across samples

IGV: visualize coverage & peaks

PCA plots: always

Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/

Modules #QUAST and #Trimmomatic got minor updates, and #VEP and #BclConvert got bugfixes. There were also a number of tweaks and fixes for AI summaries ✨

See the full changelog here: github.com/MultiQC/Mult...

Ever wanted to set report Toolbox settings from the CLI whilst generating reports? (highlight, hide, and rename samples) Now you can! We finally closed this ancient issue from 2016 🧓🏻🌈🎉 github.com/MultiQC/Mult...

See the docs to get started: docs.seqera.io/multiqc/gett...

Another quality of life improvement is that we now have a #JSONschema via @pydantic.dev for #MultiQC configuration files 🎉

This has been added to schemastore.org so that config files in #VSCode & other IDEs automatically get integrated error checking as you type, see docs.seqera.io/multiqc/gett...

🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa...
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/

Start every analysis with rigorous QC! 🚀

Read the blog post: hubs.la/Q033Kjp30

We're really excited to hear what folks make of the new functionality. Give it a try now with v1.27 and check out the documentation at docs.seqera.io/multiqc/ai

github.com/MultiQC/Mult...

We made this functionality as flexible as possible. It works out of the box with @seqera.io AI and also #OpenAI and #AnthropicAI.

Reports also have "Copy prompt" options to paste into whatever LLM you like.

Read more in the blog post: hubs.ly/Q033KvM10

The premise is fairly simple: #MultiQC can now build prompts including sample data and send these to LLM services to get summaries.

This can be done at report-generation time, with the summary is part of the HTML. But also *interactively* on-demand when reading the report.

Nice tiny Xmas gift in the new release 🎄. Percolator feature weights can be simply plotted now with multiQC!

And finally a bunch of core improvements! #Python 3.13 now officially supported, and 3.8 dropped. Tooltips, improved memory efficiency, properly sorted samples and strings, default settings for @cursor_ai editor and more!

github.com/MultiQC/Mult...

💫 12 modules updated with features, tweaks and fixes:

- GATK BQSR
- Pychopper
- fastp
- RNA-SeqC
- phantompeakqualtools
- QualiMap RNASeq
- QualiMap BamQC
- DRAGEN
- Interop
- Dedup
- Bclconvert
- Nanostat