MultiQC
@multiqc.info
Open-source tool to simplify and streamline quality control analysis, from @seqera.io
Reposted by MultiQC
New year, new opportunities!🎆 Subscribe to our monthly newsletter for exclusive @nextflow.io and Seqera updates, including new product features, training sessions, events, and more. 📧 hubs.la/Q03YRwmn0
January 6, 2026 at 2:46 PM
New year, new opportunities!🎆 Subscribe to our monthly newsletter for exclusive @nextflow.io and Seqera updates, including new product features, training sessions, events, and more. 📧 hubs.la/Q03YRwmn0
Reposted by MultiQC
On a server bright on Christmas night,
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
December 19, 2025 at 8:30 PM
On a server bright on Christmas night,
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
MultiQC v1.33 is out! 🎉
4 new modules, 60% faster parquet merging, and lots of improvements across the board. Here's what's new 🧵
4 new modules, 60% faster parquet merging, and lots of improvements across the board. Here's what's new 🧵
a man wearing sunglasses says " brand new baby " while pointing
ALT: a man wearing sunglasses says " brand new baby " while pointing
media.tenor.com
December 9, 2025 at 4:39 PM
MultiQC v1.33 is out! 🎉
4 new modules, 60% faster parquet merging, and lots of improvements across the board. Here's what's new 🧵
4 new modules, 60% faster parquet merging, and lots of improvements across the board. Here's what's new 🧵
Reposted by MultiQC
Stay in the loop with everything @nextflow.io, @seqera.io, @multiqc.info, and more!✉️ Subscribe to our newsletter to get monthly updates on new product features, industry and community insights, events, and training workshops.
📚 Subscribe now: hubs.la/Q03Xf2NB0
📚 Subscribe now: hubs.la/Q03Xf2NB0
December 8, 2025 at 2:15 PM
Stay in the loop with everything @nextflow.io, @seqera.io, @multiqc.info, and more!✉️ Subscribe to our newsletter to get monthly updates on new product features, industry and community insights, events, and training workshops.
📚 Subscribe now: hubs.la/Q03Xf2NB0
📚 Subscribe now: hubs.la/Q03Xf2NB0
Reposted by MultiQC
Importance of being open!🌍 One of the greatest strengths of @multiqc.info is open source development.🧵What started as a one-person project in 2015 has grown into a collaborative effort involving 235 contributors today.🧵
📚 Read the blog post: hubs.la/Q03WRgb20
📚 Read the blog post: hubs.la/Q03WRgb20
December 4, 2025 at 2:04 PM
Importance of being open!🌍 One of the greatest strengths of @multiqc.info is open source development.🧵What started as a one-person project in 2015 has grown into a collaborative effort involving 235 contributors today.🧵
📚 Read the blog post: hubs.la/Q03WRgb20
📚 Read the blog post: hubs.la/Q03WRgb20
#NextflowSummit now available on-demand! Be sure to check out the "MultiQC turns 10" talk by @ewels.bsky.social 👀
The global #NextflowSummit by @seqera.io brought together 1,500+ attendees for an incredible showcase of bioinformatics innovations spanning translational research, automation, AI & more! 🌍
All talks are now available on-demand on YouTube 🎥 Check out the playlist: hubs.la/Q03VW5Mk0
All talks are now available on-demand on YouTube 🎥 Check out the playlist: hubs.la/Q03VW5Mk0
November 26, 2025 at 12:37 PM
#NextflowSummit now available on-demand! Be sure to check out the "MultiQC turns 10" talk by @ewels.bsky.social 👀
💡A simple idea emerged from the frustration of manually parsing countless bioinformatics tool outputs.📊 That idea became MultiQC, and today we're celebrating 10 years of transforming global bioinformatics🌎
📗Read the highlights blog by @seqera.io: hubs.la/Q03TXC_N0
📗Read the highlights blog by @seqera.io: hubs.la/Q03TXC_N0
November 19, 2025 at 9:20 AM
💡A simple idea emerged from the frustration of manually parsing countless bioinformatics tool outputs.📊 That idea became MultiQC, and today we're celebrating 10 years of transforming global bioinformatics🌎
📗Read the highlights blog by @seqera.io: hubs.la/Q03TXC_N0
📗Read the highlights blog by @seqera.io: hubs.la/Q03TXC_N0
Reposted by MultiQC
🎉 Celebrating 10 years of @multiqc.info! 📊 The numbers speak volumes:
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
October 24, 2025 at 4:13 PM
🎉 Celebrating 10 years of @multiqc.info! 📊 The numbers speak volumes:
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
Reposted by MultiQC
🎉Celebrating 10 Years of @multiqc.info
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
August 5, 2025 at 7:44 AM
🎉Celebrating 10 Years of @multiqc.info
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
🎉 Today marks 10 years since the very first @multiqc.info commit!
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
August 4, 2025 at 8:03 PM
🎉 Today marks 10 years since the very first @multiqc.info commit!
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
Reposted by MultiQC
9/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
multiqc.info
June 30, 2025 at 1:15 PM
9/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Did you see, #MultiQC v1.28 went out a few days ago!
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
a man in a red sweater is dancing in a living room in front of a fireplace .
ALT: a man in a red sweater is dancing in a living room in front of a fireplace .
media.tenor.com
April 9, 2025 at 8:21 AM
Did you see, #MultiQC v1.28 went out a few days ago!
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
Reposted by MultiQC
🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa...
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
multiqc.info
January 25, 2025 at 2:15 PM
🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa...
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
Reposted by MultiQC
One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful!
seqera.io/multiqc/
github.com/MultiQC/Mult...
seqera.io/multiqc/
github.com/MultiQC/Mult...
MultiQC | Seqera
Aggregate results from bioinformatics analyses across many samples into a single report
seqera.io
January 28, 2025 at 8:43 AM
One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful!
seqera.io/multiqc/
github.com/MultiQC/Mult...
seqera.io/multiqc/
github.com/MultiQC/Mult...
Reposted by MultiQC
February 14, 2025 at 9:46 AM
Reposted by MultiQC
Read the blog post: hubs.la/Q033Kjp30
AI Summaries now available in MultiQC | Seqera
AI Summaries allow MultiQC users to quickly generate summaries of their reports, offering insights without needing to comb through every detail manually.
hubs.la
January 23, 2025 at 3:25 PM
Read the blog post: hubs.la/Q033Kjp30
Reposted by MultiQC
The gold standard in #bioinformatics reporting just got even better! #AI Summaries are now available in @multiqc.info🎉
Find out more: hubs.la/Q033Kjp30
Find out more: hubs.la/Q033Kjp30
January 23, 2025 at 3:25 PM
The gold standard in #bioinformatics reporting just got even better! #AI Summaries are now available in @multiqc.info🎉
Find out more: hubs.la/Q033Kjp30
Find out more: hubs.la/Q033Kjp30
Reposted by MultiQC
One of the cooler things I saw at the Nextflow summit a few months ago. Can't wait to try this.
January 23, 2025 at 3:29 PM
One of the cooler things I saw at the Nextflow summit a few months ago. Can't wait to try this.
MultiQC v1.27 was released yesterday. It includes one major new feature:
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
January 23, 2025 at 3:33 PM
MultiQC v1.27 was released yesterday. It includes one major new feature:
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
Reposted by MultiQC
I'm excited to see my contributions made it into this version! It was a lot easier to add new modules than I expected. If anyone is wishing a tool was supported, you should just try adding it.
🆕 10 new modules supporting new tools in this release:
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
December 23, 2024 at 2:57 AM
I'm excited to see my contributions made it into this version! It was a lot easier to add new modules than I expected. If anyone is wishing a tool was supported, you should just try adding it.
Reposted by MultiQC
Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social
🆕 10 new modules supporting new tools in this release:
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
December 22, 2024 at 11:29 AM
Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social
Reposted by MultiQC
Nice tiny Xmas gift in the new release 🎄. Percolator feature weights can be simply plotted now with multiQC!
December 22, 2024 at 11:50 AM
Nice tiny Xmas gift in the new release 🎄. Percolator feature weights can be simply plotted now with multiQC!
Sneaking a little holiday gift in at the last moment: @multiqc.info v1.26 just released!
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
December 22, 2024 at 11:12 AM
Sneaking a little holiday gift in at the last moment: @multiqc.info v1.26 just released!
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
- 🆕 10 new tools supported
- 💫 12 modules updated
- 🛠️ Bug fixes, improvements and refactoring!
If you're quick, you might see a little christmassy easter egg!
github.com/MultiQC/Mult...
Reposted by MultiQC
I'm looking for a nice pull-quote about @multiqc.info that we can use in some @seqera.io materials, if anyone fancies dropping something nice into the comments as an early Christmas present for me, that would be much appreciated! 🙏🏻 😅
December 16, 2024 at 10:59 AM
I'm looking for a nice pull-quote about @multiqc.info that we can use in some @seqera.io materials, if anyone fancies dropping something nice into the comments as an early Christmas present for me, that would be much appreciated! 🙏🏻 😅
Reposted by MultiQC
🍎 Master the art of Quality Control for NGS data with @galaxytraining.bsky.social! Learn how to assess, improve, and summarize sequencing quality using tools like FASTQC, Cutadapt, and MultiQC.
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...
Sequence analysis / Quality Control / Hands-on: Quality Control
Analyses of sequences
training.galaxyproject.org
October 23, 2024 at 7:10 PM
🍎 Master the art of Quality Control for NGS data with @galaxytraining.bsky.social! Learn how to assess, improve, and summarize sequencing quality using tools like FASTQC, Cutadapt, and MultiQC.
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...
Catch errors early and save time on downstream analysis!
training.galaxyproject.org/training-mat...