Maxime U Garcia
@maxulysse.github.io
Bioinfomagician/PhD in Bioinformatics, developing @nextflow.io @nf-co.re pipelines
Posts and RPs in English/French - He/him
Posts and RPs in English/French - He/him
Reposted by Maxime U Garcia
Kickstart 2026 with all the latest features of Nextflow, including static types & workflow inputs/outputs!🚀 Watch the latest @seqera.io webinar showcasing these capabilities using @nf-co.re /RNAseq!
👀 Watch on-demand: hubs.la/Q03ZRYYg0
👀 Watch on-demand: hubs.la/Q03ZRYYg0
January 7, 2026 at 3:41 PM
Kickstart 2026 with all the latest features of Nextflow, including static types & workflow inputs/outputs!🚀 Watch the latest @seqera.io webinar showcasing these capabilities using @nf-co.re /RNAseq!
👀 Watch on-demand: hubs.la/Q03ZRYYg0
👀 Watch on-demand: hubs.la/Q03ZRYYg0
On a server bright on Christmas night,
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
December 19, 2025 at 8:30 PM
On a server bright on Christmas night,
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
Reposted by Maxime U Garcia
Pipeline release! nf-core/phaseimpute v1.1.0 - 1.1.0 - Purple Beagle!
Please see the changelog: https://github.com/nf-core/phaseimpute/releases/tag/1.1.0
Please see the changelog: https://github.com/nf-core/phaseimpute/releases/tag/1.1.0
Release 1.1.0 - Purple Beagle · nf-core/phaseimpute
What's Changed
This release adds two new imputation tools: Beagle5 and Minimac4.
It also updates the templates to match the latest version of nf-core (v3.5.1).
Special thanks to Kübra Narci and Die...
github.com
December 1, 2025 at 6:33 PM
Pipeline release! nf-core/phaseimpute v1.1.0 - 1.1.0 - Purple Beagle!
Please see the changelog: https://github.com/nf-core/phaseimpute/releases/tag/1.1.0
Please see the changelog: https://github.com/nf-core/phaseimpute/releases/tag/1.1.0
Reposted by Maxime U Garcia
Pipeline release! nf-core/riboseq v1.2.0 - nf-core/riboseq v1.2.0 - Mercury Spider!
Please see the changelog: https://github.com/nf-core/riboseq/releases/tag/1.2.0
Please see the changelog: https://github.com/nf-core/riboseq/releases/tag/1.2.0
Release nf-core/riboseq v1.2.0 - Mercury Spider · nf-core/riboseq
What's Changed
Json schema improvements by @andreirie in #103
Important! Template update for nf-core/tools v3.4.1 by @nf-core-bot in #111
Feat ribowaltz by @iraiosub in #113
Feat tubemap by @iraio...
github.com
December 3, 2025 at 2:58 PM
Pipeline release! nf-core/riboseq v1.2.0 - nf-core/riboseq v1.2.0 - Mercury Spider!
Please see the changelog: https://github.com/nf-core/riboseq/releases/tag/1.2.0
Please see the changelog: https://github.com/nf-core/riboseq/releases/tag/1.2.0
Reposted by Maxime U Garcia
Pipeline release! nf-core/variantbenchmarking v1.4.0 - Thin Yasar!
Please see the changelog: https://github.com/nf-core/variantbenchmarking/releases/tag/1.4.0
Please see the changelog: https://github.com/nf-core/variantbenchmarking/releases/tag/1.4.0
Release Thin Yasar · nf-core/variantbenchmarking
What's Changed
Pipeline Release 1.4.0 by @kubranarci in #253
New functions
Adding concordance analysis for query samples by @kubranarci in #237
239 add happy sompy and truvari in multiqc report ...
github.com
December 3, 2025 at 3:23 PM
Pipeline release! nf-core/variantbenchmarking v1.4.0 - Thin Yasar!
Please see the changelog: https://github.com/nf-core/variantbenchmarking/releases/tag/1.4.0
Please see the changelog: https://github.com/nf-core/variantbenchmarking/releases/tag/1.4.0
Reposted by Maxime U Garcia
Pipeline release! nf-core/sarek v3.7.0 - 3.7.0 - Saltoluokta!
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.7.0
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.7.0
Release 3.7.0 - Saltoluokta · nf-core/sarek
What's Changed
New Tools
#2044 - Added VCF filtering with bcftools after variant calling
#2049 - Added consensus calling for small variants called by multiple tools (default: 2+ tools)
New Parame...
github.com
December 4, 2025 at 5:06 PM
Pipeline release! nf-core/sarek v3.7.0 - 3.7.0 - Saltoluokta!
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.7.0
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.7.0
Reposted by Maxime U Garcia
Pipeline release! nf-core/rnavar v1.2.2 - nf-core/rnavar 1.2.2 - Gray Red Tail!
Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.2
Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.2
Release nf-core/rnavar 1.2.2 - Gray Red Tail · nf-core/rnavar
What's Changed
use nf-core-utils by @maxulysse in #233
Important! Template update for nf-core/tools v3.4.0 by @nf-core-bot in #242
Important! Template update for nf-core/tools v3.4.1 by @nf-core-b...
github.com
December 5, 2025 at 10:10 AM
Pipeline release! nf-core/rnavar v1.2.2 - nf-core/rnavar 1.2.2 - Gray Red Tail!
Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.2
Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.2
Reposted by Maxime U Garcia
Pipeline release! nf-core/mag v5.3.0 - mag 5.3.0 - Rainbow Rattlesnake!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0
Release mag 5.3.0 - Rainbow Rattlesnake · nf-core/mag
Added
#905 - Add nf-test snapshot for test_assembly_input profile (by @dialvarezs)
#930 - Add binner SemiBin2 (by @d4straub)
#861 - Added --generate_bigmag_file to execute the bigmag workflow that...
github.com
December 5, 2025 at 12:03 PM
Pipeline release! nf-core/mag v5.3.0 - mag 5.3.0 - Rainbow Rattlesnake!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0
Reposted by Maxime U Garcia
Pipeline release! nf-core/rnaseq v3.22.1 - nf-core/rnaseq v3.22.1 - Polished Palladium Penguin!
Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.1
Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.1
Release nf-core/rnaseq v3.22.1 - Polished Palladium Penguin · nf-core/rnaseq
What's Changed
Bump after release 3.22.0 by @pinin4fjords in #1640
add ARM CI test by @mashehu in #1641
Long merge rsem by @EladH1 in #1642
Fix HISAT2 issues: BAM CSI index with UMI deduplication ...
github.com
December 5, 2025 at 6:25 PM
Pipeline release! nf-core/rnaseq v3.22.1 - nf-core/rnaseq v3.22.1 - Polished Palladium Penguin!
Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.1
Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.1
Reposted by Maxime U Garcia
The Nextflow training sessions are in full swing here in the UK, complete with all our favorite Nextflow, @nf-co.re, and @seqera.io swag! 🎉
September 11, 2025 at 10:02 AM
The Nextflow training sessions are in full swing here in the UK, complete with all our favorite Nextflow, @nf-co.re, and @seqera.io swag! 🎉
Reposted by Maxime U Garcia
Here's a little easter egg for those of you using @seqera.io #platform.. 🥚 ✨
Recently we released a new feature that lets you set custom pipeline icons. What's less well known is that animated icons are also supported - party time!! 🪩 🥳 🎉
The trick is to rename your .gif to a .png file extension 🤫
Recently we released a new feature that lets you set custom pipeline icons. What's less well known is that animated icons are also supported - party time!! 🪩 🥳 🎉
The trick is to rename your .gif to a .png file extension 🤫
September 1, 2025 at 7:31 AM
Here's a little easter egg for those of you using @seqera.io #platform.. 🥚 ✨
Recently we released a new feature that lets you set custom pipeline icons. What's less well known is that animated icons are also supported - party time!! 🪩 🥳 🎉
The trick is to rename your .gif to a .png file extension 🤫
Recently we released a new feature that lets you set custom pipeline icons. What's less well known is that animated icons are also supported - party time!! 🪩 🥳 🎉
The trick is to rename your .gif to a .png file extension 🤫
Reposted by Maxime U Garcia
That feeling when AI can create cat videos with better @nextflow.io training content than you've made in years.. 😻 😹
Could this be the new face of #Nextflow at @seqera.io ?!
Could this be the new face of #Nextflow at @seqera.io ?!
August 27, 2025 at 3:58 PM
That feeling when AI can create cat videos with better @nextflow.io training content than you've made in years.. 😻 😹
Could this be the new face of #Nextflow at @seqera.io ?!
Could this be the new face of #Nextflow at @seqera.io ?!
Reposted by Maxime U Garcia
🎉Celebrating 10 Years of @multiqc.info
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
August 5, 2025 at 7:44 AM
🎉Celebrating 10 Years of @multiqc.info
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
Reposted by Maxime U Garcia
🎉 Today marks 10 years since the very first @multiqc.info commit!
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
August 4, 2025 at 8:03 PM
🎉 Today marks 10 years since the very first @multiqc.info commit!
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
Reposted by Maxime U Garcia
Next week, we'll be present at the @esaearth.esa.int Living Planet Symposium 2025 #LPS25, in Vienna, Austria.
🌍We’re thrilled to be part of the dialogue shaping the future of EO science and technology.
www.linkedin.com/posts/terrad...
🌍We’re thrilled to be part of the dialogue shaping the future of EO science and technology.
www.linkedin.com/posts/terrad...
Next week, Terradue will be present at the ESA Living Planet Symposium 2025, held in Vienna, Austria. | terradue
Next week, Terradue will be present at the ESA Living Planet Symposium 2025, held in Vienna, Austria. LPS is one of the most important global events dedicated to Earth Observation. We’re thrilled to b...
www.linkedin.com
June 20, 2025 at 2:03 PM
Next week, we'll be present at the @esaearth.esa.int Living Planet Symposium 2025 #LPS25, in Vienna, Austria.
🌍We’re thrilled to be part of the dialogue shaping the future of EO science and technology.
www.linkedin.com/posts/terrad...
🌍We’re thrilled to be part of the dialogue shaping the future of EO science and technology.
www.linkedin.com/posts/terrad...
Reposted by Maxime U Garcia
Coming up next at #LPS25:
Felix Kummer et al.: Standardizing Earth Observation Workflows with Nextflow and nf-core
📍11:30 at Hall L3
@kelewinska.bsky.social @hostertp.bsky.social
Felix Kummer et al.: Standardizing Earth Observation Workflows with Nextflow and nf-core
📍11:30 at Hall L3
@kelewinska.bsky.social @hostertp.bsky.social
June 26, 2025 at 8:04 AM
Coming up next at #LPS25:
Felix Kummer et al.: Standardizing Earth Observation Workflows with Nextflow and nf-core
📍11:30 at Hall L3
@kelewinska.bsky.social @hostertp.bsky.social
Felix Kummer et al.: Standardizing Earth Observation Workflows with Nextflow and nf-core
📍11:30 at Hall L3
@kelewinska.bsky.social @hostertp.bsky.social
June 25, 2025 at 6:32 AM
Reposted by Maxime U Garcia
🎤 Did you catch Esha Joshi's talk on scaling with @seqera.io?
In this talk, she shared how Seqera empowers scientists to scale code, compute, projects, and teams—from early experimentation to enterprise-level deployments. 💻
🔗 Watch the full talk here: hubs.la/Q03pHjL00
In this talk, she shared how Seqera empowers scientists to scale code, compute, projects, and teams—from early experimentation to enterprise-level deployments. 💻
🔗 Watch the full talk here: hubs.la/Q03pHjL00
Esha Joshi: Scale with Seqera: Accelerate, Expand, and Collaborate
YouTube video by Nextflow
www.youtube.com
May 29, 2025 at 1:07 PM
🎤 Did you catch Esha Joshi's talk on scaling with @seqera.io?
In this talk, she shared how Seqera empowers scientists to scale code, compute, projects, and teams—from early experimentation to enterprise-level deployments. 💻
🔗 Watch the full talk here: hubs.la/Q03pHjL00
In this talk, she shared how Seqera empowers scientists to scale code, compute, projects, and teams—from early experimentation to enterprise-level deployments. 💻
🔗 Watch the full talk here: hubs.la/Q03pHjL00
Reposted by Maxime U Garcia
Pipeline release! nf-core/bamtofastq v2.2.0 - 2.2.0 - Kathleen Booth!
Please see the changelog: https://github.com/nf-core/bamtofastq/releases/tag/2.2.0
Please see the changelog: https://github.com/nf-core/bamtofastq/releases/tag/2.2.0
May 23, 2025 at 12:31 PM
Pipeline release! nf-core/bamtofastq v2.2.0 - 2.2.0 - Kathleen Booth!
Please see the changelog: https://github.com/nf-core/bamtofastq/releases/tag/2.2.0
Please see the changelog: https://github.com/nf-core/bamtofastq/releases/tag/2.2.0
Reposted by Maxime U Garcia
🎉 Nextflow Summit Boston 2025 – What a Week!
Last week, we brought together industry experts from around the world to shape the future of biotech and pharma through innovation in data science and computational biology. Here are a some key highlights 🧵
Last week, we brought together industry experts from around the world to shape the future of biotech and pharma through innovation in data science and computational biology. Here are a some key highlights 🧵
May 20, 2025 at 1:58 PM
🎉 Nextflow Summit Boston 2025 – What a Week!
Last week, we brought together industry experts from around the world to shape the future of biotech and pharma through innovation in data science and computational biology. Here are a some key highlights 🧵
Last week, we brought together industry experts from around the world to shape the future of biotech and pharma through innovation in data science and computational biology. Here are a some key highlights 🧵
Reposted by Maxime U Garcia
🎉The #NextflowSummit Boston 2025 has officially come to a close.
Over the past few days, we’ve seen inspiring presentations from across the community—highlighting the latest @nextflow.io innovations, real-world applications & the groundbreaking work accelerating discovery
Over the past few days, we’ve seen inspiring presentations from across the community—highlighting the latest @nextflow.io innovations, real-world applications & the groundbreaking work accelerating discovery
May 16, 2025 at 5:21 PM
🎉The #NextflowSummit Boston 2025 has officially come to a close.
Over the past few days, we’ve seen inspiring presentations from across the community—highlighting the latest @nextflow.io innovations, real-world applications & the groundbreaking work accelerating discovery
Over the past few days, we’ve seen inspiring presentations from across the community—highlighting the latest @nextflow.io innovations, real-world applications & the groundbreaking work accelerating discovery
Reposted by Maxime U Garcia
New short blog: Setting up the @nextflow.io Language Server (LSP) with NeoVim livesys.se/posts/nextfl...
Setting up the Nextflow Language Server (LSP) with NeoVim | Living Systems_
livesys.se
May 16, 2025 at 9:43 PM
New short blog: Setting up the @nextflow.io Language Server (LSP) with NeoVim livesys.se/posts/nextfl...
Reposted by Maxime U Garcia
Supporting Community at the Core of Innovation 🌍🙌
We were honored to provide space at the #NextflowSummit Boston for the incredible Boston Women in Bioinformatics group to gather, connect, and celebrate a major milestone: becoming a 501(c)(3) nonprofit! 🎉
We were honored to provide space at the #NextflowSummit Boston for the incredible Boston Women in Bioinformatics group to gather, connect, and celebrate a major milestone: becoming a 501(c)(3) nonprofit! 🎉
May 16, 2025 at 3:42 PM
Supporting Community at the Core of Innovation 🌍🙌
We were honored to provide space at the #NextflowSummit Boston for the incredible Boston Women in Bioinformatics group to gather, connect, and celebrate a major milestone: becoming a 501(c)(3) nonprofit! 🎉
We were honored to provide space at the #NextflowSummit Boston for the incredible Boston Women in Bioinformatics group to gather, connect, and celebrate a major milestone: becoming a 501(c)(3) nonprofit! 🎉
Reposted by Maxime U Garcia
We’ve just dropped some powerful new @nextflow.io features as part of the 25.04 release, all designed to enhance clarity, control, and collaboration in workflow development. 🎉
💡Learn more: hubs.la/Q03mQ2_10
💡Learn more: hubs.la/Q03mQ2_10
May 15, 2025 at 6:25 PM
We’ve just dropped some powerful new @nextflow.io features as part of the 25.04 release, all designed to enhance clarity, control, and collaboration in workflow development. 🎉
💡Learn more: hubs.la/Q03mQ2_10
💡Learn more: hubs.la/Q03mQ2_10
Reposted by Maxime U Garcia
What an incredible few days! 🎉The @nextflow.io Training and @nf-co.re Hackathon have officially wrapped up. A huge thank you to all the trainers, organizers, and participants who made it possible
May 14, 2025 at 9:28 PM
What an incredible few days! 🎉The @nextflow.io Training and @nf-co.re Hackathon have officially wrapped up. A huge thank you to all the trainers, organizers, and participants who made it possible