Ksenia Kuznetsova
@kkuznetsova.bsky.social
Project Manager | Outreach | (ex-)🦓🐟 Transcription researcher
Database Curation @cdcode.bsky.social
Database Curation @cdcode.bsky.social
Reposted by Ksenia Kuznetsova
CD-CODE 2.0 is now published in @narjournal.bsky.social 🤩
CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies
👀 doi.org/10.1093/nar/...
CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies
👀 doi.org/10.1093/nar/...
November 14, 2025 at 1:20 PM
CD-CODE 2.0 is now published in @narjournal.bsky.social 🤩
CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies
👀 doi.org/10.1093/nar/...
CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies
👀 doi.org/10.1093/nar/...
Reposted by Ksenia Kuznetsova
☀️summer is here -
and so is CD-CODE v1.10 release!🤩
💡CD-CODE has now 719 manually curated #condensates (and ~40% are #human associated!)
💡Check out new #condensates and updated #protein - condensate connections at cd-code.org
#Bioinformatics #DatabaseUpdate #IDR #RNP #RBP #cdcode
and so is CD-CODE v1.10 release!🤩
💡CD-CODE has now 719 manually curated #condensates (and ~40% are #human associated!)
💡Check out new #condensates and updated #protein - condensate connections at cd-code.org
#Bioinformatics #DatabaseUpdate #IDR #RNP #RBP #cdcode
June 11, 2025 at 1:33 PM
☀️summer is here -
and so is CD-CODE v1.10 release!🤩
💡CD-CODE has now 719 manually curated #condensates (and ~40% are #human associated!)
💡Check out new #condensates and updated #protein - condensate connections at cd-code.org
#Bioinformatics #DatabaseUpdate #IDR #RNP #RBP #cdcode
and so is CD-CODE v1.10 release!🤩
💡CD-CODE has now 719 manually curated #condensates (and ~40% are #human associated!)
💡Check out new #condensates and updated #protein - condensate connections at cd-code.org
#Bioinformatics #DatabaseUpdate #IDR #RNP #RBP #cdcode
Reposted by Ksenia Kuznetsova
Thanks for the shoot-out @zebrafishrock.bsky.social! This beautiful work by the Hnisz lab characterized a micropeptide (killswitch) and used it to probe condensates. This opens the door to assess the function of condensates and @shivalidongre.bsky.social did just that in our beloved fish embryo.
Contains a #zebrafish cameo from the @nvastenhouw.bsky.social Lab!
What controls condensate composition and function beyond binding stoichiometry? We show that condensate microenvironments play a key role, and can be probed by a micropeptide killswitch in live cells. www.nature.com/articles/s41... in @nature.com with @yaotianzhang.bsky.social Denes Hnisz & team.
June 5, 2025 at 8:35 PM
Thanks for the shoot-out @zebrafishrock.bsky.social! This beautiful work by the Hnisz lab characterized a micropeptide (killswitch) and used it to probe condensates. This opens the door to assess the function of condensates and @shivalidongre.bsky.social did just that in our beloved fish embryo.
Reposted by Ksenia Kuznetsova
Apparently we do not have a JEDI starter pack yet.
@fly-jedi.bsky.social
and everyone else: let me know which other Junior European #Drosophila Investigators are missing!
go.bsky.app/PcTGEMc
@fly-jedi.bsky.social
and everyone else: let me know which other Junior European #Drosophila Investigators are missing!
go.bsky.app/PcTGEMc
June 6, 2025 at 7:31 AM
Apparently we do not have a JEDI starter pack yet.
@fly-jedi.bsky.social
and everyone else: let me know which other Junior European #Drosophila Investigators are missing!
go.bsky.app/PcTGEMc
@fly-jedi.bsky.social
and everyone else: let me know which other Junior European #Drosophila Investigators are missing!
go.bsky.app/PcTGEMc
Reposted by Ksenia Kuznetsova
🥳 Wrap-up of #mentorship Season 3!
Yesterday’s we reflected on 3 months of insights and achievements.
Thanks to #mentors for their support and dedication 🙏 and good luck to #mentees with their career path! Our community is there for you beyond this season! 💙
Hope to see many in the next seasons 🤗
Yesterday’s we reflected on 3 months of insights and achievements.
Thanks to #mentors for their support and dedication 🙏 and good luck to #mentees with their career path! Our community is there for you beyond this season! 💙
Hope to see many in the next seasons 🤗
May 1, 2025 at 5:38 PM
🥳 Wrap-up of #mentorship Season 3!
Yesterday’s we reflected on 3 months of insights and achievements.
Thanks to #mentors for their support and dedication 🙏 and good luck to #mentees with their career path! Our community is there for you beyond this season! 💙
Hope to see many in the next seasons 🤗
Yesterday’s we reflected on 3 months of insights and achievements.
Thanks to #mentors for their support and dedication 🙏 and good luck to #mentees with their career path! Our community is there for you beyond this season! 💙
Hope to see many in the next seasons 🤗
Exciting that CD-CODE is now connected to THE go-to resource for everything protein-related!
It's a great step forward, directing further developments and outlook for our project @tothpetroczylab.bsky.social @mscheremetjew.bsky.social 🥳
It's a great step forward, directing further developments and outlook for our project @tothpetroczylab.bsky.social @mscheremetjew.bsky.social 🥳
We're really excited that CD-CODE is now cross-referenced by #UniProt and has already been included in the latest release: www.uniprot.org/release-note...
Spreading knowledge about #biomolecular #condensates 🥳
@ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
Spreading knowledge about #biomolecular #condensates 🥳
@ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
UniProt
UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.
www.uniprot.org
April 28, 2025 at 1:59 PM
Exciting that CD-CODE is now connected to THE go-to resource for everything protein-related!
It's a great step forward, directing further developments and outlook for our project @tothpetroczylab.bsky.social @mscheremetjew.bsky.social 🥳
It's a great step forward, directing further developments and outlook for our project @tothpetroczylab.bsky.social @mscheremetjew.bsky.social 🥳
Reposted by Ksenia Kuznetsova
Very pleased that CD-Code is now cross-referenced by #UniProt and that we made it into the latest release: www.uniprot.org/release-note...
Browse our manually curated #condensates at: cd-code.org
Browse our manually curated #condensates at: cd-code.org
April 28, 2025 at 1:23 PM
Very pleased that CD-Code is now cross-referenced by #UniProt and that we made it into the latest release: www.uniprot.org/release-note...
Browse our manually curated #condensates at: cd-code.org
Browse our manually curated #condensates at: cd-code.org
Reposted by Ksenia Kuznetsova
We're really excited that CD-CODE is now cross-referenced by #UniProt and has already been included in the latest release: www.uniprot.org/release-note...
Spreading knowledge about #biomolecular #condensates 🥳
@ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
Spreading knowledge about #biomolecular #condensates 🥳
@ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
UniProt
UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.
www.uniprot.org
April 28, 2025 at 8:42 AM
We're really excited that CD-CODE is now cross-referenced by #UniProt and has already been included in the latest release: www.uniprot.org/release-note...
Spreading knowledge about #biomolecular #condensates 🥳
@ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
Spreading knowledge about #biomolecular #condensates 🥳
@ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
Reposted by Ksenia Kuznetsova
Science delivers! Time & time again scientists make unexpected & important discoveries when following their curiousity! That's why we're organizing Woodstock Night Science, a reimagined conference to inspire us to new ideas.
June 10-13 woodstock.img.cas.cz
Join us! #TheConferenceToEndAllConferences
June 10-13 woodstock.img.cas.cz
Join us! #TheConferenceToEndAllConferences
March 9, 2025 at 2:40 PM
Science delivers! Time & time again scientists make unexpected & important discoveries when following their curiousity! That's why we're organizing Woodstock Night Science, a reimagined conference to inspire us to new ideas.
June 10-13 woodstock.img.cas.cz
Join us! #TheConferenceToEndAllConferences
June 10-13 woodstock.img.cas.cz
Join us! #TheConferenceToEndAllConferences
Reposted by Ksenia Kuznetsova
🍃CD-CODE update v1.09 is here!🍃
👀Check out the new #biomolecular #condensates at cd-code.org
👀We're continuing to update #Protein - #condensate connections and resolve issues!
Join us to share your #condensate #expertise as a contributor: cd-code.org/signup
#Bioinformatics #DatabaseUpdate #IDR
👀Check out the new #biomolecular #condensates at cd-code.org
👀We're continuing to update #Protein - #condensate connections and resolve issues!
Join us to share your #condensate #expertise as a contributor: cd-code.org/signup
#Bioinformatics #DatabaseUpdate #IDR
a group of ducklings are running in a field .
ALT: a group of ducklings are running in a field .
media.tenor.com
March 7, 2025 at 12:47 PM
🍃CD-CODE update v1.09 is here!🍃
👀Check out the new #biomolecular #condensates at cd-code.org
👀We're continuing to update #Protein - #condensate connections and resolve issues!
Join us to share your #condensate #expertise as a contributor: cd-code.org/signup
#Bioinformatics #DatabaseUpdate #IDR
👀Check out the new #biomolecular #condensates at cd-code.org
👀We're continuing to update #Protein - #condensate connections and resolve issues!
Join us to share your #condensate #expertise as a contributor: cd-code.org/signup
#Bioinformatics #DatabaseUpdate #IDR
Reposted by Ksenia Kuznetsova
I read the interviews last night and enjoyed them a lot - it shows that being a woman in science isn't a "one size fits all" experience, yet the challenges we face seem so universal. The system has work to do, but in the meantime, let's remember how many amazing and inspiring women surround us 👩🔬👩🔬
#february11 #womeninscience | International Day of Women & Girls in Science
Read our interviews with female researchers from the @mpi-ie.bsky.social – showcasing their way into science, the hurdles they faced and how exciting life as a scientist can be.
www.ie-freiburg.mpg.de/women-in-sci...
Read our interviews with female researchers from the @mpi-ie.bsky.social – showcasing their way into science, the hurdles they faced and how exciting life as a scientist can be.
www.ie-freiburg.mpg.de/women-in-sci...
February 12, 2025 at 6:17 AM
I read the interviews last night and enjoyed them a lot - it shows that being a woman in science isn't a "one size fits all" experience, yet the challenges we face seem so universal. The system has work to do, but in the meantime, let's remember how many amazing and inspiring women surround us 👩🔬👩🔬
Reposted by Ksenia Kuznetsova
🔬🌐 Happy #InternationalDayOfWomenAndGirlsInScience!
Women and girls have historically faced—and continue to face—barriers in accessing education and pursuing careers in #STEM.
We celebrate the achievements and #persistence of women and girls who are shaping the future of science and innovation!💡🌟
Women and girls have historically faced—and continue to face—barriers in accessing education and pursuing careers in #STEM.
We celebrate the achievements and #persistence of women and girls who are shaping the future of science and innovation!💡🌟
February 11, 2025 at 1:31 PM
🔬🌐 Happy #InternationalDayOfWomenAndGirlsInScience!
Women and girls have historically faced—and continue to face—barriers in accessing education and pursuing careers in #STEM.
We celebrate the achievements and #persistence of women and girls who are shaping the future of science and innovation!💡🌟
Women and girls have historically faced—and continue to face—barriers in accessing education and pursuing careers in #STEM.
We celebrate the achievements and #persistence of women and girls who are shaping the future of science and innovation!💡🌟
Reposted by Ksenia Kuznetsova
It was #InternationalMentoringDay on Friday and we want to celebrate our mentors and mentees 🤩
#Mentorship isn't one-directional - it is a dynamic exchange where both mentor and mentee evolve together!
As organizers - we are also constantly learning from the amazing Sci.STEPS community 💙
#Mentorship isn't one-directional - it is a dynamic exchange where both mentor and mentee evolve together!
As organizers - we are also constantly learning from the amazing Sci.STEPS community 💙
January 20, 2025 at 9:41 AM
It was #InternationalMentoringDay on Friday and we want to celebrate our mentors and mentees 🤩
#Mentorship isn't one-directional - it is a dynamic exchange where both mentor and mentee evolve together!
As organizers - we are also constantly learning from the amazing Sci.STEPS community 💙
#Mentorship isn't one-directional - it is a dynamic exchange where both mentor and mentee evolve together!
As organizers - we are also constantly learning from the amazing Sci.STEPS community 💙
Reposted by Ksenia Kuznetsova
Calling on all RNA lovers! We are searching for phase-lock tubes to separate organic and aqueous phases during phenol:chloroform extractions of RNA because QIAGEN has discontinued the MaXtract tubes that we used to use. All input will be gratefully received! @doragrbavac.bsky.social
January 20, 2025 at 4:26 PM
Calling on all RNA lovers! We are searching for phase-lock tubes to separate organic and aqueous phases during phenol:chloroform extractions of RNA because QIAGEN has discontinued the MaXtract tubes that we used to use. All input will be gratefully received! @doragrbavac.bsky.social
Reposted by Ksenia Kuznetsova
I am thrilled to share that our latest pre-print from the @evahoermanseder.bsky.social lab 🐸🧬, is now online! Check it out here:
www.biorxiv.org/content/10.1...
Highlights and key findings from our study in the thread below 👇
www.biorxiv.org/content/10.1...
Highlights and key findings from our study in the thread below 👇
Digital Reprogramming Decodes Epigenetic Barriers of Cell Fate Changes
Fates of differentiated cells in our body can be induced to change by nuclear reprogramming. In this way, cells valuable for therapeutic purposes and disease modeling can be produced. However, the eff...
www.biorxiv.org
January 26, 2025 at 12:10 PM
I am thrilled to share that our latest pre-print from the @evahoermanseder.bsky.social lab 🐸🧬, is now online! Check it out here:
www.biorxiv.org/content/10.1...
Highlights and key findings from our study in the thread below 👇
www.biorxiv.org/content/10.1...
Highlights and key findings from our study in the thread below 👇
Reposted by Ksenia Kuznetsova
Very excited to share our paper on Gene and Transposable Element expression in mammalian preimplantation development, online today! www.cell.com/cell/fulltex...
A short thread to highlight some of our findings 🧵
A short thread to highlight some of our findings 🧵
January 20, 2025 at 8:29 PM
Very excited to share our paper on Gene and Transposable Element expression in mammalian preimplantation development, online today! www.cell.com/cell/fulltex...
A short thread to highlight some of our findings 🧵
A short thread to highlight some of our findings 🧵
Reposted by Ksenia Kuznetsova
✨ Excited to share my latest preprint on how H3K4 methylation promotes transcriptional memory from gametes to embryos across a transcriptionally silent window — crucial for proper zygotic genome activation and development. 🐸🧬✨
📄 Check it out here: doi.org/10.1101/2025...
👇 Highlights below
📄 Check it out here: doi.org/10.1101/2025...
👇 Highlights below
H3K4 methylation-promoted transcriptional memory ensures faithful zygotic genome activation and embryonic development
In the life of a vertebrate embryo, gene expression is initiated for the first time at zygotic genome activation (ZGA). Maternally expressed transcription factors present in the embryo are essential f...
doi.org
January 22, 2025 at 1:56 PM
✨ Excited to share my latest preprint on how H3K4 methylation promotes transcriptional memory from gametes to embryos across a transcriptionally silent window — crucial for proper zygotic genome activation and development. 🐸🧬✨
📄 Check it out here: doi.org/10.1101/2025...
👇 Highlights below
📄 Check it out here: doi.org/10.1101/2025...
👇 Highlights below
Reposted by Ksenia Kuznetsova
Best first bsky post posible 4us:
2025 INTERNSHIP CALL IS NOW OPEN!
Ready for an adventure this summer?
Join our 2025 #Epigenetics #SummerInternship at Helmholtz Munich! Dive into AI, stem cells, nutrition and cutting-edge research, while gaining hands-on experience.
Apply now! 👉 bit.ly/40g1BWL
2025 INTERNSHIP CALL IS NOW OPEN!
Ready for an adventure this summer?
Join our 2025 #Epigenetics #SummerInternship at Helmholtz Munich! Dive into AI, stem cells, nutrition and cutting-edge research, while gaining hands-on experience.
Apply now! 👉 bit.ly/40g1BWL
January 15, 2025 at 2:18 PM
Best first bsky post posible 4us:
2025 INTERNSHIP CALL IS NOW OPEN!
Ready for an adventure this summer?
Join our 2025 #Epigenetics #SummerInternship at Helmholtz Munich! Dive into AI, stem cells, nutrition and cutting-edge research, while gaining hands-on experience.
Apply now! 👉 bit.ly/40g1BWL
2025 INTERNSHIP CALL IS NOW OPEN!
Ready for an adventure this summer?
Join our 2025 #Epigenetics #SummerInternship at Helmholtz Munich! Dive into AI, stem cells, nutrition and cutting-edge research, while gaining hands-on experience.
Apply now! 👉 bit.ly/40g1BWL
Reposted by Ksenia Kuznetsova
Re-upping this great overview article from @mirlab.bsky.social lab "Dynamic microenvironments shape nuclear organization and gene expression"
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
December 20, 2024 at 9:16 AM
Re-upping this great overview article from @mirlab.bsky.social lab "Dynamic microenvironments shape nuclear organization and gene expression"
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Reposted by Ksenia Kuznetsova
We have closed our call for mentees for the third season of Sci.STEPS 🤩
This time with a record number of #international mentors and mentees 💙
#ThankYou for your enthusiasm!
We are looking forward to the next season: to connecting everyone, meeting at events and discussions in the chat groups!
This time with a record number of #international mentors and mentees 💙
#ThankYou for your enthusiasm!
We are looking forward to the next season: to connecting everyone, meeting at events and discussions in the chat groups!
December 18, 2024 at 1:55 PM
We have closed our call for mentees for the third season of Sci.STEPS 🤩
This time with a record number of #international mentors and mentees 💙
#ThankYou for your enthusiasm!
We are looking forward to the next season: to connecting everyone, meeting at events and discussions in the chat groups!
This time with a record number of #international mentors and mentees 💙
#ThankYou for your enthusiasm!
We are looking forward to the next season: to connecting everyone, meeting at events and discussions in the chat groups!
Reposted by Ksenia Kuznetsova
Last chance to apply for the 2025 edition of the Sci.STEPS program! Don't miss your opportunity to get career advice and guidance from one of our experienced mentors.
🔊 Only a few days left to apply as a MENTEE for the 3rd Mentorship Season!
🌟 Submit your application by DECEMBER 15th! 🌟
Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path.
www.scisteps.org/call-2025
🌟 Submit your application by DECEMBER 15th! 🌟
Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path.
www.scisteps.org/call-2025
December 14, 2024 at 10:56 PM
Last chance to apply for the 2025 edition of the Sci.STEPS program! Don't miss your opportunity to get career advice and guidance from one of our experienced mentors.
Reposted by Ksenia Kuznetsova
🔊 Only a few days left to apply as a MENTEE for the 3rd Mentorship Season!
🌟 Submit your application by DECEMBER 15th! 🌟
Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path.
www.scisteps.org/call-2025
🌟 Submit your application by DECEMBER 15th! 🌟
Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path.
www.scisteps.org/call-2025
December 13, 2024 at 7:56 AM
🔊 Only a few days left to apply as a MENTEE for the 3rd Mentorship Season!
🌟 Submit your application by DECEMBER 15th! 🌟
Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path.
www.scisteps.org/call-2025
🌟 Submit your application by DECEMBER 15th! 🌟
Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path.
www.scisteps.org/call-2025
Reposted by Ksenia Kuznetsova
Our PICNIC tool predicts condensate-proteins regardless of their structural disorder across organisms @naturecomms.bsky.social. Congratulations to @annaha-poetry-art.bsky.social for developing the algorithm and to Hari
@hymanlab.bsky.social for the experiments! www.nature.com/articles/s41...
@hymanlab.bsky.social for the experiments! www.nature.com/articles/s41...
PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms - Nature Communications
Here the authors report PICNIC (Proteins Involved in CoNdensates In Cells), a machine learning algorithm that predicts approximately 40–60% of proteins form condensates in various organisms, showing n...
www.nature.com
December 12, 2024 at 8:27 PM
Our PICNIC tool predicts condensate-proteins regardless of their structural disorder across organisms @naturecomms.bsky.social. Congratulations to @annaha-poetry-art.bsky.social for developing the algorithm and to Hari
@hymanlab.bsky.social for the experiments! www.nature.com/articles/s41...
@hymanlab.bsky.social for the experiments! www.nature.com/articles/s41...
Reposted by Ksenia Kuznetsova
Navigating your PhD? Sci.STEPS connects you with experienced peers who've navigated these waters before. From career paths to research challenges, having someone to talk to makes the difference. Join Sci.STEPS and set your course! Apply now 🧭✨
📢We have opened the call for #mentees!
Apply and become a mentee: scisteps.org/call-2025
Sci.STEPS mentors share with you their knowledge and insights on studying abroad, navigating relocations, building careers, and transitioning between fields!💙
@phdvoice.bsky.social @dragonflymh.bsky.social
Apply and become a mentee: scisteps.org/call-2025
Sci.STEPS mentors share with you their knowledge and insights on studying abroad, navigating relocations, building careers, and transitioning between fields!💙
@phdvoice.bsky.social @dragonflymh.bsky.social
December 9, 2024 at 5:24 PM
Navigating your PhD? Sci.STEPS connects you with experienced peers who've navigated these waters before. From career paths to research challenges, having someone to talk to makes the difference. Join Sci.STEPS and set your course! Apply now 🧭✨
we've updated CD-CODE
#condensate
database to its ❄️winter❄️ version :)
go check if your favorite condensate made it through! no?
add it yourself and help us keep the CD-CODE updated 💟 cd-code.org/signup
#condensate
database to its ❄️winter❄️ version :)
go check if your favorite condensate made it through! no?
add it yourself and help us keep the CD-CODE updated 💟 cd-code.org/signup
December 9, 2024 at 2:34 PM
we've updated CD-CODE
#condensate
database to its ❄️winter❄️ version :)
go check if your favorite condensate made it through! no?
add it yourself and help us keep the CD-CODE updated 💟 cd-code.org/signup
#condensate
database to its ❄️winter❄️ version :)
go check if your favorite condensate made it through! no?
add it yourself and help us keep the CD-CODE updated 💟 cd-code.org/signup