Ilir Sheraj
ilir-ai.bsky.social
Ilir Sheraj
@ilir-ai.bsky.social
Computational Biologist (PhD), ML, Math, Metal and Money (4Ms). Thinking of returning to Academia again...
Reposted by Ilir Sheraj
Great to see @greally.bsky.social ‘s Epigenetics book in the wild at #cellbio2025 - all that pestering paid off
December 9, 2025 at 6:13 PM
Reposted by Ilir Sheraj
Spatial transcriptomics reveals immune–stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis @insight.jci.org @yomogidalab.bsky.social @cumedicalschool.bsky.social
insight.jci.org/articles/vie...
November 25, 2025 at 9:29 PM
Reposted by Ilir Sheraj
My little book on Schrödinger's famous classic 'What Is Life?' is out! Offering the most comprehensive analysis ever undertaken of the book's origins, reception, impact, and legacy, it uncovers Schrödinger's motivations in writing it, and shows how it has shaped our current understanding of the cell
<i>What Is Life?</i> Revisited
Cambridge Core - Philosophy: General Interest - <i>What Is Life?</i> Revisited
www.cambridge.org
October 10, 2025 at 1:52 PM
Reposted by Ilir Sheraj
In 1965, the mathematical physicist Roger Penrose proved that, given two simple assumptions, space-time must end at points called singularities. The paper has been called “the most important paper in general relativity” since Einstein’s. www.quantamagazine.org/mathematical...
September 23, 2025 at 5:03 PM
Reposted by Ilir Sheraj
✨Exciting news: the main story of my PhD is out in Science!

Together with Christine Moene @cmoene.bsky.social, we explored what happens when you scramble the genome—revealing how Sox2’s position shapes enhancer activation.

📖 Read the full story here: www.science.org/doi/10.1126/...
Functional maps of a genomic locus reveal confinement of an enhancer by its target gene
Genes are often activated by enhancers located at large genomic distances, and the importance of this positioning is poorly understood. By relocating promoter-reporter constructs into thousands of alt...
www.science.org
September 19, 2025 at 2:09 PM
Reposted by Ilir Sheraj
Reposted by Ilir Sheraj
Effect of ultra-processed food consumption on male reproductive and metabolic health: Cell Metabolism www.cell.com/cell-metabol...
Effect of ultra-processed food consumption on male reproductive and metabolic health
This randomized controlled nutrition intervention conducted in males of reproductive age shows that, compared with an unprocessed diet, consumption of ultra-processed foods impairs metabolic and repro...
www.cell.com
August 28, 2025 at 4:00 PM
Reposted by Ilir Sheraj
📢Last 2 weeks #immunometabolism discoveries
@biomednews.bsky.social ⬇️⬇️⬇️

biomed.news/bims-imicid/...
biomed.news/bims-imicid/...

Highlights:

Species-specific serine metabolism differentially controls natural killer cell functions
nature.com/articles/s42...
August 27, 2025 at 10:48 PM
Reposted by Ilir Sheraj
drop your best book recs 📚💙
August 7, 2025 at 5:25 PM
Reposted by Ilir Sheraj
Check out our new preprint on the discovery of a molecular switch in NAC that mediates nascent chain sorting on the ribosome and prevents mitochondrial protein mistargeting by SRP. A great collaboration with the Shan Lab @Caltech and the Qi Lab @UVA: www.biorxiv.org/content/10.1...
August 1, 2025 at 3:27 PM
Reposted by Ilir Sheraj
If you’ve ever tried to cram for an exam, you know that it’s easier to memorize something if you learn the information in shorter, spaced-out sessions. These dynamics are as relevant to each individual cell’s existence as they are to ours. Claire Evans reports: www.quantamagazine.org/what-can-a-c...
What Can a Cell Remember? | Quanta Magazine
A small but enthusiastic group of neuroscientists is exhuming overlooked experiments and performing new ones to explore whether cells record past experiences — fundamentally challenging what memory is...
www.quantamagazine.org
July 30, 2025 at 2:34 PM
It was great being part of this 😍
July 30, 2025 at 12:54 PM
Reposted by Ilir Sheraj
Already, AI has rediscovered nature’s symmetries and found new equations for dark matter’s clumping patterns.
AI Comes Up with Bizarre Physics Experiments. But They Work. | Quanta Magazine
Artificial intelligence software is designing novel experimental protocols that improve upon the work of human physicists, although the humans are still “doing a lot of baby-sitting.”
www.quantamagazine.org
July 23, 2025 at 8:04 PM
Reposted by Ilir Sheraj
Telomere-to-telomere DNA sequencing is set to transform the field of human genetics in coming years. For a flavour of what's coming, see this exciting work on nearly complete genomes of 65 individuals from diverse populations, out today in @nature.com by @glennislogsdon.bsky.social & colleagues. 👇🧬🧪
Complex genetic variation in nearly complete human genomes - Nature
Using sequencing and haplotype-resolved assembly of 65 diverse human genomes, complex regions including the major histocompatibility complex and centromeres are analysed.
www.nature.com
July 23, 2025 at 4:20 PM
Reposted by Ilir Sheraj
Stimulating immune cells in vitro is a common experimental lab model. We profiled 150K blood immune cells treated with 11 different stimuli to compare the effects. The data are freely available for researchers. See the preprint for our findings and to access the data 🧪 doi.org/10.1101/2025...
July 3, 2025 at 3:39 PM
Reposted by Ilir Sheraj
NEWS&VIEWS | C Sakuma & @obataf-lab.bsky.social‬ (Kyoto Univ, RIKEN)

A protein-responsive gut hormone that regulates appetite, sleep and organismal lifespan
🧪
A gut hormone governing protein appetite and longevity - Nature Metabolism
A study in Nature Metabolism reports a protein-responsive gut hormone that regulates appetite, sleep and organismal lifespan. This finding sheds light on the evolutionarily conserved endocrine system that controls dietary protein intake.
bit.ly
July 15, 2025 at 7:01 PM
Reposted by Ilir Sheraj
Reposted by Ilir Sheraj
Cellular changes to adipose tissue after weight-loss surgery could point to pathways responsible for the metabolic benefits of this procedure

go.nature.com/4eKUFb1
Weight loss alters adipose tissue beyond just reducing fat
Cellular changes to adipose tissue after weight-loss surgery could point to pathways responsible for the metabolic benefits of this procedure.
go.nature.com
July 13, 2025 at 8:43 AM
Reposted by Ilir Sheraj
More videos from the webinar series are available here: www.youtube.com/@build-a-cel...

And if you'd like to watch future presentations live, you can find more information here: www.buildacell.org/seminar
How do lipids shape life? I explore this question in my recent talk for the Build-a-Cell 🦠 seminar series. Thanks to @kateadamala.bsky.social for hosting! Watch it here: youtu.be/JnF7hPCiSbI?...
Build-a-Cell seminar James Saenz: Harnessing minimal cells to understand the living membranes
YouTube video by Build-a-Cell
youtu.be
July 10, 2025 at 12:31 PM
Reposted by Ilir Sheraj
A must-read for histone afficionados: our new review on 'Histone-mediated chromatin organization in prokaryotes and viruses' www.cell.com/trends/bioch... @samuelschwab.bsky.social @vikramalva.bsky.social
Histone-mediated chromatin organization in prokaryotes and viruses
Histones are fundamental chromatin-organizing proteins in eukaryotes and archaea, where they assemble into (hyper)nucleosomes that wrap DNA. Recent studies have expanded the known repertoire of histon...
www.cell.com
June 30, 2025 at 7:35 AM
Reposted by Ilir Sheraj
'We discovered and validated significant associations of MT haplogroup T (HG-T) with resistance to anti-programmed cell death protein-1-based ICI (both single-agent and combination) and have shown that HG-T is independent from established tumor predictors'
#Immunology #Immunotherapy
Inherited mitochondrial genetics as a predictor of immune checkpoint inhibition efficacy in melanoma - Nature Medicine
In this genomic analysis of peripheral blood samples of the phase 3 CheckMate-067 trial of ipilimumab (IPI) versus nivolumab (NIVO) versus ipilimumab and nivolumab (IPI-NIVO) in melanoma, the status o...
www.nature.com
June 29, 2025 at 10:06 PM