Goran LAKISIC
@goranlakisic.bsky.social
Cellular Biologist, Microscopy, Image analysis, Geek, Dad
Reposted by Goran LAKISIC
137 years ago today 🎂 Institut Pasteur opened in Paris (Nov 14, 1888 🏛️)
Funded by 100K+ donors after the rabies vaccine success, it launched a scientific legacy:
🔬 10 Nobel Prizes
🌍 32 Pasteur Network Institutes
💉 Countless lives saved
From rabies to COVID-19, the mission continues.
Funded by 100K+ donors after the rabies vaccine success, it launched a scientific legacy:
🔬 10 Nobel Prizes
🌍 32 Pasteur Network Institutes
💉 Countless lives saved
From rabies to COVID-19, the mission continues.
November 14, 2025 at 8:23 AM
137 years ago today 🎂 Institut Pasteur opened in Paris (Nov 14, 1888 🏛️)
Funded by 100K+ donors after the rabies vaccine success, it launched a scientific legacy:
🔬 10 Nobel Prizes
🌍 32 Pasteur Network Institutes
💉 Countless lives saved
From rabies to COVID-19, the mission continues.
Funded by 100K+ donors after the rabies vaccine success, it launched a scientific legacy:
🔬 10 Nobel Prizes
🌍 32 Pasteur Network Institutes
💉 Countless lives saved
From rabies to COVID-19, the mission continues.
Avec l'actualité du jour écouter Matmatah - Marée Haute est de circonstance.
youtube.com/watch?v=DqkK...
youtube.com/watch?v=DqkK...
Matmatah - Marée haute (clip officiel)
YouTube video by MATMATAH
youtube.com
November 10, 2025 at 3:25 PM
Avec l'actualité du jour écouter Matmatah - Marée Haute est de circonstance.
youtube.com/watch?v=DqkK...
youtube.com/watch?v=DqkK...
Reposted by Goran LAKISIC
We are highlighting Cathy Jackson, @biologyopen.bsky.social Deputy Editor and an Editorial Advisory Board member at @jcellsci.bsky.social, as an extraordinary biologist this week. #100biologists @ijmonod.bsky.social
October 2, 2025 at 8:00 AM
We are highlighting Cathy Jackson, @biologyopen.bsky.social Deputy Editor and an Editorial Advisory Board member at @jcellsci.bsky.social, as an extraordinary biologist this week. #100biologists @ijmonod.bsky.social
Reposted by Goran LAKISIC
🎓 My team is seeking a PhD student in Biochemistry & Cell Biology at I2BC, Paris-Saclay!
🔬 Study cytoskeletal signaling in collective cell migration
🌍 Fully funded, 3 yrs | 📍 Gif-sur-Yvette, France
🗓️ Apply by Aug 22 via the following link:
emploi.cnrs.fr/Offres/Docto...
🔬 Study cytoskeletal signaling in collective cell migration
🌍 Fully funded, 3 yrs | 📍 Gif-sur-Yvette, France
🗓️ Apply by Aug 22 via the following link:
emploi.cnrs.fr/Offres/Docto...
August 6, 2025 at 7:10 PM
🎓 My team is seeking a PhD student in Biochemistry & Cell Biology at I2BC, Paris-Saclay!
🔬 Study cytoskeletal signaling in collective cell migration
🌍 Fully funded, 3 yrs | 📍 Gif-sur-Yvette, France
🗓️ Apply by Aug 22 via the following link:
emploi.cnrs.fr/Offres/Docto...
🔬 Study cytoskeletal signaling in collective cell migration
🌍 Fully funded, 3 yrs | 📍 Gif-sur-Yvette, France
🗓️ Apply by Aug 22 via the following link:
emploi.cnrs.fr/Offres/Docto...
Reposted by Goran LAKISIC
Interested in lysosome damage and repair pathways? Check out the latest updates.
New Online! Lysosomal membrane homeostasis and its importance in physiology and disease
Lysosomal membrane homeostasis and its importance in physiology and disease
Nature Reviews Molecular Cell Biology, Published online: 04 August 2025; doi:10.1038/s41580-025-00873-wLysosomes degrade cellular components, and their membrane is an important signalling hub. Recent insights into the mechanisms that maintain lysosomal membrane homeostasis — including the interplay between membrane damage, repair, lysophagy and lysosome biogenesis — highlight their importance in physiology, in disease and during ageing.
bit.ly
August 5, 2025 at 1:02 PM
Interested in lysosome damage and repair pathways? Check out the latest updates.
Reposted by Goran LAKISIC
Exciting fundamental discovery!
Early embryos fight bacteria WITHOUT immune cells
Zebrafish, mouse, and human embryos use epithelial cells (trophoectoderm)—not immune cells—to engulf and destroy 𝘌. 𝘤𝘰𝘭𝘪 and 𝘚. 𝘢𝘶𝘳𝘦𝘶𝘴
Hoijman Lab Barcelona 🇪🇸
𝘊𝘦𝘭𝘭 𝘏𝘰𝘴𝘵 𝘔𝘪𝘤𝘳𝘰𝘣𝘦
www.sciencedirect.com/science/arti...
Early embryos fight bacteria WITHOUT immune cells
Zebrafish, mouse, and human embryos use epithelial cells (trophoectoderm)—not immune cells—to engulf and destroy 𝘌. 𝘤𝘰𝘭𝘪 and 𝘚. 𝘢𝘶𝘳𝘦𝘶𝘴
Hoijman Lab Barcelona 🇪🇸
𝘊𝘦𝘭𝘭 𝘏𝘰𝘴𝘵 𝘔𝘪𝘤𝘳𝘰𝘣𝘦
www.sciencedirect.com/science/arti...
June 21, 2025 at 5:06 AM
Exciting fundamental discovery!
Early embryos fight bacteria WITHOUT immune cells
Zebrafish, mouse, and human embryos use epithelial cells (trophoectoderm)—not immune cells—to engulf and destroy 𝘌. 𝘤𝘰𝘭𝘪 and 𝘚. 𝘢𝘶𝘳𝘦𝘶𝘴
Hoijman Lab Barcelona 🇪🇸
𝘊𝘦𝘭𝘭 𝘏𝘰𝘴𝘵 𝘔𝘪𝘤𝘳𝘰𝘣𝘦
www.sciencedirect.com/science/arti...
Early embryos fight bacteria WITHOUT immune cells
Zebrafish, mouse, and human embryos use epithelial cells (trophoectoderm)—not immune cells—to engulf and destroy 𝘌. 𝘤𝘰𝘭𝘪 and 𝘚. 𝘢𝘶𝘳𝘦𝘶𝘴
Hoijman Lab Barcelona 🇪🇸
𝘊𝘦𝘭𝘭 𝘏𝘰𝘴𝘵 𝘔𝘪𝘤𝘳𝘰𝘣𝘦
www.sciencedirect.com/science/arti...
Reposted by Goran LAKISIC
La beauté de Ghibli, ça ne s'imite pas ! 🍃
Plus de vingt films du studio d'animation mythique, garantis sans IA, arrivent bientôt (et gratuitement) sur nos antennes et france.tv.
Plus de vingt films du studio d'animation mythique, garantis sans IA, arrivent bientôt (et gratuitement) sur nos antennes et france.tv.
April 3, 2025 at 1:06 PM
La beauté de Ghibli, ça ne s'imite pas ! 🍃
Plus de vingt films du studio d'animation mythique, garantis sans IA, arrivent bientôt (et gratuitement) sur nos antennes et france.tv.
Plus de vingt films du studio d'animation mythique, garantis sans IA, arrivent bientôt (et gratuitement) sur nos antennes et france.tv.
Reposted by Goran LAKISIC
2/ If you’ve worked with Spatial Transcriptomics (ST) data, you’ve indeed had some troubles with segmentation accuracy. Segmentation problems mess up downstream analysis & obscure cell-cell interactions - which are ST’s biggest promises. #segger
March 18, 2025 at 2:48 PM
2/ If you’ve worked with Spatial Transcriptomics (ST) data, you’ve indeed had some troubles with segmentation accuracy. Segmentation problems mess up downstream analysis & obscure cell-cell interactions - which are ST’s biggest promises. #segger
Reposted by Goran LAKISIC
Do you LOVE organelles??
Well I am THRILLED to announce that Nellie has been published in @naturemethods.bsky.social!
Nellie a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D, 3D, timelapse, multichannel live-cell microscopy
🧵1/N
Well I am THRILLED to announce that Nellie has been published in @naturemethods.bsky.social!
Nellie a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D, 3D, timelapse, multichannel live-cell microscopy
🧵1/N
February 27, 2025 at 8:13 PM
Do you LOVE organelles??
Well I am THRILLED to announce that Nellie has been published in @naturemethods.bsky.social!
Nellie a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D, 3D, timelapse, multichannel live-cell microscopy
🧵1/N
Well I am THRILLED to announce that Nellie has been published in @naturemethods.bsky.social!
Nellie a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D, 3D, timelapse, multichannel live-cell microscopy
🧵1/N
Reposted by Goran LAKISIC
🧬 Comment notre vie prénatale influence-t-elle notre santé future ?
👩💻 Participez au webinaire avec Anne Gabory, chercheuse à l’INRAE dans le laboratoire « Biologie de la Reproduction, Environnement, Epigénétique et Développement »
🔗 Inscrivez-vous ici : bit.ly/WebinaireEns...
@pasteur.fr
👩💻 Participez au webinaire avec Anne Gabory, chercheuse à l’INRAE dans le laboratoire « Biologie de la Reproduction, Environnement, Epigénétique et Développement »
🔗 Inscrivez-vous ici : bit.ly/WebinaireEns...
@pasteur.fr
February 18, 2025 at 2:08 PM
🧬 Comment notre vie prénatale influence-t-elle notre santé future ?
👩💻 Participez au webinaire avec Anne Gabory, chercheuse à l’INRAE dans le laboratoire « Biologie de la Reproduction, Environnement, Epigénétique et Développement »
🔗 Inscrivez-vous ici : bit.ly/WebinaireEns...
@pasteur.fr
👩💻 Participez au webinaire avec Anne Gabory, chercheuse à l’INRAE dans le laboratoire « Biologie de la Reproduction, Environnement, Epigénétique et Développement »
🔗 Inscrivez-vous ici : bit.ly/WebinaireEns...
@pasteur.fr
Reposted by Goran LAKISIC
Thrilled to share MyoFuse, an AI-based workflow for automated skeletal muscle cell fusion quantification! 🥳
This is a collaboration with Benjamin Lair and Cedric Moro (I2MC, Toulouse), improving the Fusion Index (FI) measurement.
Preprint: www.biorxiv.org/content/10.1...
#AI #Svetlana #Myofuse
This is a collaboration with Benjamin Lair and Cedric Moro (I2MC, Toulouse), improving the Fusion Index (FI) measurement.
Preprint: www.biorxiv.org/content/10.1...
#AI #Svetlana #Myofuse
February 18, 2025 at 10:04 AM
Thrilled to share MyoFuse, an AI-based workflow for automated skeletal muscle cell fusion quantification! 🥳
This is a collaboration with Benjamin Lair and Cedric Moro (I2MC, Toulouse), improving the Fusion Index (FI) measurement.
Preprint: www.biorxiv.org/content/10.1...
#AI #Svetlana #Myofuse
This is a collaboration with Benjamin Lair and Cedric Moro (I2MC, Toulouse), improving the Fusion Index (FI) measurement.
Preprint: www.biorxiv.org/content/10.1...
#AI #Svetlana #Myofuse
Reposted by Goran LAKISIC
Prof. Kelly Rogers delivers a wonderful tribute to Spencer Shorte at #APMC13 #ACMM28. Spencer Shorte was a huge advocate for core imaging facilities & has contributed enormously to the microscopy community around the world. He was known & well-respected by many @australianmms.bsky.social members.
February 4, 2025 at 5:24 AM
Prof. Kelly Rogers delivers a wonderful tribute to Spencer Shorte at #APMC13 #ACMM28. Spencer Shorte was a huge advocate for core imaging facilities & has contributed enormously to the microscopy community around the world. He was known & well-respected by many @australianmms.bsky.social members.
Reposted by Goran LAKISIC
#Communiqué 🗞️ Vous avez travaillé au CNRS ? Rejoignez #CNRSalumni, le réseau pour toutes celles et tous ceux qui ont eu une expérience professionnelle au CNRS, qu’ils soient désormais en mobilité ou partis vers d’autres sphères professionnelles en France ou l’étranger.
👉 www.cnrs.fr/fr/presse/le...
👉 www.cnrs.fr/fr/presse/le...
January 16, 2025 at 4:27 PM
#Communiqué 🗞️ Vous avez travaillé au CNRS ? Rejoignez #CNRSalumni, le réseau pour toutes celles et tous ceux qui ont eu une expérience professionnelle au CNRS, qu’ils soient désormais en mobilité ou partis vers d’autres sphères professionnelles en France ou l’étranger.
👉 www.cnrs.fr/fr/presse/le...
👉 www.cnrs.fr/fr/presse/le...
Reposted by Goran LAKISIC
And to start 2025 strong… Our work #NanoPyx is out in Nature Methods 😍❤️ DOI: doi.org/10.1038/s415...
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
January 2, 2025 at 11:24 AM
And to start 2025 strong… Our work #NanoPyx is out in Nature Methods 😍❤️ DOI: doi.org/10.1038/s415...
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
Reposted by Goran LAKISIC
C'est aujourd'hui que sort chez @dargaud.com cette beauté de 144 pages en 24x34 : COMPULSION, une novella d'Adam Roberts, traduite par votre serviteuse et magnifiquement illustrée par le grand François Schuiten.
November 29, 2024 at 10:06 AM
C'est aujourd'hui que sort chez @dargaud.com cette beauté de 144 pages en 24x34 : COMPULSION, une novella d'Adam Roberts, traduite par votre serviteuse et magnifiquement illustrée par le grand François Schuiten.
Reposted by Goran LAKISIC
Do you want to learn light microscopy?
The registration for the Pasteur course 'Principles and Applications of Fluorescence Microscopy' in March 2025 are open!!
pasteur.fr/en/pafm
10 March – 21 March 2025
plz RT! #PAFM is back after a two-year break 🤩🌈🔬🪛
👇thread
The registration for the Pasteur course 'Principles and Applications of Fluorescence Microscopy' in March 2025 are open!!
pasteur.fr/en/pafm
10 March – 21 March 2025
plz RT! #PAFM is back after a two-year break 🤩🌈🔬🪛
👇thread
Pasteur courses
pasteur.fr
November 27, 2024 at 4:08 PM
Do you want to learn light microscopy?
The registration for the Pasteur course 'Principles and Applications of Fluorescence Microscopy' in March 2025 are open!!
pasteur.fr/en/pafm
10 March – 21 March 2025
plz RT! #PAFM is back after a two-year break 🤩🌈🔬🪛
👇thread
The registration for the Pasteur course 'Principles and Applications of Fluorescence Microscopy' in March 2025 are open!!
pasteur.fr/en/pafm
10 March – 21 March 2025
plz RT! #PAFM is back after a two-year break 🤩🌈🔬🪛
👇thread
Deconvolutional Neural Network 🤔
November 26, 2024 at 8:15 PM
Deconvolutional Neural Network 🤔
Reposted by Goran LAKISIC
🚀 If you're passionate about Open Source in Bio, check out #ShareYourCloning! 🧬✨ It's a web app to plan and document molecular cloning & genetic engineering.
We're looking for contributors and testers – every bit helps! 🙌🔬
🔗 try it: shareyourcloning.org
🎞️ demo: www.youtube.com/watch?v=n0he...
We're looking for contributors and testers – every bit helps! 🙌🔬
🔗 try it: shareyourcloning.org
🎞️ demo: www.youtube.com/watch?v=n0he...
ShareYourCloning
A web application to generate molecular cloning strategies in json format, and share them with others.
shareyourcloning.org
November 22, 2024 at 1:32 PM
🚀 If you're passionate about Open Source in Bio, check out #ShareYourCloning! 🧬✨ It's a web app to plan and document molecular cloning & genetic engineering.
We're looking for contributors and testers – every bit helps! 🙌🔬
🔗 try it: shareyourcloning.org
🎞️ demo: www.youtube.com/watch?v=n0he...
We're looking for contributors and testers – every bit helps! 🙌🔬
🔗 try it: shareyourcloning.org
🎞️ demo: www.youtube.com/watch?v=n0he...
Reposted by Goran LAKISIC
Reminder to update the "social links" in your ORCiD profile with your Bluesky handle:
November 22, 2024 at 6:46 AM
Reminder to update the "social links" in your ORCiD profile with your Bluesky handle:
Reposted by Goran LAKISIC
The #biovoxxel figure tools provide a convenient way in saving SVG vector graphic from Fiji and create publication figures in Inkscape.
Thanks to Ved Sharma those SVGs can now also be opened in the browser and even in Adobe Illustrator, if you really have to use it (I won't blame you 😉)
Thanks to Ved Sharma those SVGs can now also be opened in the browser and even in Adobe Illustrator, if you really have to use it (I won't blame you 😉)
November 20, 2024 at 1:49 PM
The #biovoxxel figure tools provide a convenient way in saving SVG vector graphic from Fiji and create publication figures in Inkscape.
Thanks to Ved Sharma those SVGs can now also be opened in the browser and even in Adobe Illustrator, if you really have to use it (I won't blame you 😉)
Thanks to Ved Sharma those SVGs can now also be opened in the browser and even in Adobe Illustrator, if you really have to use it (I won't blame you 😉)
Reposted by Goran LAKISIC
go.bsky.app/2zGz8ot
Autophagy Starter Pack - for those interested in autophagy (macro, micro and CMA), lysosomes and late endosomes! Let’s join hands to degrade the trash 😃
Autophagy Starter Pack - for those interested in autophagy (macro, micro and CMA), lysosomes and late endosomes! Let’s join hands to degrade the trash 😃
November 19, 2024 at 11:07 PM
go.bsky.app/2zGz8ot
Autophagy Starter Pack - for those interested in autophagy (macro, micro and CMA), lysosomes and late endosomes! Let’s join hands to degrade the trash 😃
Autophagy Starter Pack - for those interested in autophagy (macro, micro and CMA), lysosomes and late endosomes! Let’s join hands to degrade the trash 😃
Reposted by Goran LAKISIC
New in Nature Methods from Wei, Poon, and Wang: BiomedParse, a biomedical foundation model that can jointly conduct segmentation, detection and recognition across nine imaging modalities. www.nature.com/articles/s41...
A foundation model for joint segmentation, detection and recognition of biomedical objects across nine modalities - Nature Methods
BiomedParse is a foundation model for image analysis that uses a joint learning approach to jointly conduct segmentation, detection and recognition and offer state-of-the-art performance across a wide...
www.nature.com
November 19, 2024 at 1:59 PM
New in Nature Methods from Wei, Poon, and Wang: BiomedParse, a biomedical foundation model that can jointly conduct segmentation, detection and recognition across nine imaging modalities. www.nature.com/articles/s41...
Reposted by Goran LAKISIC
We strongly suggest that academic publishers and other platforms that host research rapidly implement a Share to Bluesky button for their articles. Here's how:
docs.bsky.app/docs/advance...
#AcademicSky #HigherEd #Altmetrics
docs.bsky.app/docs/advance...
#AcademicSky #HigherEd #Altmetrics
Action Intent Links | Bluesky
Authors, websites, and apps can use action intent links to implement "Share on Bluesky" buttons, or similar in-app actions. Logged-in users will be directed to the corresponding action view in the Blu...
docs.bsky.app
November 18, 2024 at 2:48 PM
We strongly suggest that academic publishers and other platforms that host research rapidly implement a Share to Bluesky button for their articles. Here's how:
docs.bsky.app/docs/advance...
#AcademicSky #HigherEd #Altmetrics
docs.bsky.app/docs/advance...
#AcademicSky #HigherEd #Altmetrics
Reposted by Goran LAKISIC
#BIAToolTip No.3
In this thread I will introduce several of the #biovoxxel figure tools for Fiji that allow you to prepare images for scientific figures in line with GSP and preserving image quality as well as data integrity 100%
github.com/biovoxxel/Bi...
In this thread I will introduce several of the #biovoxxel figure tools for Fiji that allow you to prepare images for scientific figures in line with GSP and preserving image quality as well as data integrity 100%
github.com/biovoxxel/Bi...
GitHub - biovoxxel/BioVoxxel-Figure-Tools
Contribute to biovoxxel/BioVoxxel-Figure-Tools development by creating an account on GitHub.
github.com
November 18, 2024 at 7:25 AM
#BIAToolTip No.3
In this thread I will introduce several of the #biovoxxel figure tools for Fiji that allow you to prepare images for scientific figures in line with GSP and preserving image quality as well as data integrity 100%
github.com/biovoxxel/Bi...
In this thread I will introduce several of the #biovoxxel figure tools for Fiji that allow you to prepare images for scientific figures in line with GSP and preserving image quality as well as data integrity 100%
github.com/biovoxxel/Bi...
Reposted by Goran LAKISIC
#BIAToolTip No.2
Today, I would like to highlight the amazing IJ-wrapper 😎 for cellpose, omnipose and StarDist and more from
@romainguiet.bsky.social
and colleagues. It allows seamless integration of DL tools in a Fiji batch workflow including all imgae pre- and post-processing and analysis steps.
Today, I would like to highlight the amazing IJ-wrapper 😎 for cellpose, omnipose and StarDist and more from
@romainguiet.bsky.social
and colleagues. It allows seamless integration of DL tools in a Fiji batch workflow including all imgae pre- and post-processing and analysis steps.
November 17, 2024 at 8:05 AM
#BIAToolTip No.2
Today, I would like to highlight the amazing IJ-wrapper 😎 for cellpose, omnipose and StarDist and more from
@romainguiet.bsky.social
and colleagues. It allows seamless integration of DL tools in a Fiji batch workflow including all imgae pre- and post-processing and analysis steps.
Today, I would like to highlight the amazing IJ-wrapper 😎 for cellpose, omnipose and StarDist and more from
@romainguiet.bsky.social
and colleagues. It allows seamless integration of DL tools in a Fiji batch workflow including all imgae pre- and post-processing and analysis steps.