Inês Cunha
@inesmcunha.bsky.social
Biomedical Engineer 🤓 Now PhD student at the CMCB Lab, SciLifeLab. Learning how to gain knowledge from images 🦠🔬with AI 💻
Pinned
Inês Cunha
@inesmcunha.bsky.social
· May 14
Our work “AI4CellFate: Interpretable Early Cell Fate Prediction with Generative AI” is finally out in
@biorxivpreprint.bsky.social !!! 😍❤️ biorxiv.org/content/10.1... @scilifelab.se , @crick.ac.uk . More about it in the thread #AI4CellFate (1/n)⬇️
@biorxivpreprint.bsky.social !!! 😍❤️ biorxiv.org/content/10.1... @scilifelab.se , @crick.ac.uk . More about it in the thread #AI4CellFate (1/n)⬇️
Reposted by Inês Cunha
October 24, 2025 at 4:06 AM
Reposted by Inês Cunha
🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training
📜 www.biorxiv.org/content/10.1...
📜 www.biorxiv.org/content/10.1...
October 22, 2025 at 11:10 AM
🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training
📜 www.biorxiv.org/content/10.1...
📜 www.biorxiv.org/content/10.1...
Reposted by Inês Cunha
🚀🔬 Announcing #IMS2026 at @itqbnova.bsky.social! We're assembling a #LifeSciences #Microscopy symposium packed with ✨ speakers and 🧑🔬 workshops. All about imaging cells with photons, electrons and AI! If you love microscopy, you need to be here. Join us on March 19!
ims2026.itqbnovacommunity.org
ims2026.itqbnovacommunity.org
October 21, 2025 at 2:25 PM
🚀🔬 Announcing #IMS2026 at @itqbnova.bsky.social! We're assembling a #LifeSciences #Microscopy symposium packed with ✨ speakers and 🧑🔬 workshops. All about imaging cells with photons, electrons and AI! If you love microscopy, you need to be here. Join us on March 19!
ims2026.itqbnovacommunity.org
ims2026.itqbnovacommunity.org
Reposted by Inês Cunha
Our new preprint is up! This is the main postdoc work of @wiesner-t.bsky.social focusing on exocytosis along the axon shaft and its regulation by the sub membrane actin-spectrin scaffold: www.biorxiv.org/content/10.1...
Read the thread below for a summary of our findings 🧵1/11
Read the thread below for a summary of our findings 🧵1/11
September 17, 2025 at 2:55 PM
Our new preprint is up! This is the main postdoc work of @wiesner-t.bsky.social focusing on exocytosis along the axon shaft and its regulation by the sub membrane actin-spectrin scaffold: www.biorxiv.org/content/10.1...
Read the thread below for a summary of our findings 🧵1/11
Read the thread below for a summary of our findings 🧵1/11
Reposted by Inês Cunha
Thank you @smlm-symposium.bsky.social for the opportunity to present at #SMLMS2025! 🎉 Stay tuned for the upcoming preprint! 📄
Sebastian Bauer @sebjbauer.bsky.social from SciLifeLab Stockholm @juliettegriffie.bsky.social reporting #SMLMS2025
August 29, 2025 at 10:01 AM
Thank you @smlm-symposium.bsky.social for the opportunity to present at #SMLMS2025! 🎉 Stay tuned for the upcoming preprint! 📄
Reposted by Inês Cunha
🧑🔬📰🚀 #RxivMaker is here! A framework automating the creation of publication-ready scientific #preprints from simple Markdown. Goodbye manual formatting, and hello gorgeous manuscripts! A great adventure with @guijacquemet.bsky.social's lab
📜: zenodo.org/records/1575...
👨💻: github.com/HenriquesLab...
📜: zenodo.org/records/1575...
👨💻: github.com/HenriquesLab...
June 27, 2025 at 12:34 PM
🧑🔬📰🚀 #RxivMaker is here! A framework automating the creation of publication-ready scientific #preprints from simple Markdown. Goodbye manual formatting, and hello gorgeous manuscripts! A great adventure with @guijacquemet.bsky.social's lab
📜: zenodo.org/records/1575...
👨💻: github.com/HenriquesLab...
📜: zenodo.org/records/1575...
👨💻: github.com/HenriquesLab...
Reposted by Inês Cunha
Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
June 23, 2025 at 2:29 PM
Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
Reposted by Inês Cunha
AI4CellFate: Interpretable Early Cell Fate Prediction with Generative AI https://www.biorxiv.org/content/10.1101/2025.05.12.653464v1
May 14, 2025 at 10:47 AM
AI4CellFate: Interpretable Early Cell Fate Prediction with Generative AI https://www.biorxiv.org/content/10.1101/2025.05.12.653464v1
Our work “AI4CellFate: Interpretable Early Cell Fate Prediction with Generative AI” is finally out in
@biorxivpreprint.bsky.social !!! 😍❤️ biorxiv.org/content/10.1... @scilifelab.se , @crick.ac.uk . More about it in the thread #AI4CellFate (1/n)⬇️
@biorxivpreprint.bsky.social !!! 😍❤️ biorxiv.org/content/10.1... @scilifelab.se , @crick.ac.uk . More about it in the thread #AI4CellFate (1/n)⬇️
May 14, 2025 at 10:26 AM
Our work “AI4CellFate: Interpretable Early Cell Fate Prediction with Generative AI” is finally out in
@biorxivpreprint.bsky.social !!! 😍❤️ biorxiv.org/content/10.1... @scilifelab.se , @crick.ac.uk . More about it in the thread #AI4CellFate (1/n)⬇️
@biorxivpreprint.bsky.social !!! 😍❤️ biorxiv.org/content/10.1... @scilifelab.se , @crick.ac.uk . More about it in the thread #AI4CellFate (1/n)⬇️
First research manuscript of my PhD finally submitted!! 🥳❤️ Preprint coming soon... 👀 @juliettegriffie.bsky.social
May 12, 2025 at 3:20 PM
First research manuscript of my PhD finally submitted!! 🥳❤️ Preprint coming soon... 👀 @juliettegriffie.bsky.social
Come work with us! 😜 💻🔬
📣We are recruiting! If you are interested in developing ML tools (with a focus on interpretable ML & generative AI) for bioinformatics applications @scilifelab.se, look no more😋 1 PhD position su.varbi.com/en/what:job/... & 2 post doc positions (online soon, PM me in the meantime).
PhD student in Bioinformatics
The Department of Biochemistry and Biophysics is mainly located with the other Departments of Chemistry and Life Sciences in the Arrhenius Laboratories for Natural Sciences, which are situated in th
su.varbi.com
February 6, 2025 at 10:57 AM
Come work with us! 😜 💻🔬
Reposted by Inês Cunha
#NanoPyx and #LiquidEngine hitting the national news, highlighting our research @itqbnova.bsky.social
www.rtp.pt/noticias/pai...
📰: www.nature.com/articles/s41...
www.rtp.pt/noticias/pai...
📰: www.nature.com/articles/s41...
Investigadores da ITQB NOVA usam IA para analisar imagens biomédicas 100 vezes mais depressa
A inteligência artificial (IA) está a transformar a nossa vida diária desde as áreas mais complexas até às mais rotineiras. E uma das áreas que tem aproveitado esta tecnologia é a investigação médica,...
www.rtp.pt
January 6, 2025 at 5:17 PM
#NanoPyx and #LiquidEngine hitting the national news, highlighting our research @itqbnova.bsky.social
www.rtp.pt/noticias/pai...
📰: www.nature.com/articles/s41...
www.rtp.pt/noticias/pai...
📰: www.nature.com/articles/s41...
What an incredible journey with Bruno and António (not on bsky yet) ❤️ I learned so much with these guys and had a blast working with them. This was truly the dream team ❤️ #NanoPyx
January 2, 2025 at 1:58 PM
What an incredible journey with Bruno and António (not on bsky yet) ❤️ I learned so much with these guys and had a blast working with them. This was truly the dream team ❤️ #NanoPyx
And to start 2025 strong… Our work #NanoPyx is out in Nature Methods 😍❤️ DOI: doi.org/10.1038/s415...
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
January 2, 2025 at 11:24 AM
And to start 2025 strong… Our work #NanoPyx is out in Nature Methods 😍❤️ DOI: doi.org/10.1038/s415...
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️