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Jean-Yves Tinevez

Jean-Yves Tinevez

@jytinevez.bsky.social

2.1K followers 680 following 250 posts

Research engineer and core facility manager at the Institut Pasteur
https://research.pasteur.fr/en/team/image-analysis-hub/
Everything #TrackMate #Mastodon-sc (the tool to track lineages in microscopy videos, not the social networks etc).
Views are my own .. more

Biology 51%

Engineering 10%

more

Posts Replies Media Videos

Jean-Yves Tinevez @jytinevez.bsky.social · 1d

Scientific fois gras is on the way

Reposted by Jean-Yves Tinévez

Peter O'Toole @yorkbioimaging.bsky.social · 3d

From PhD in Hong Kong to @institutpasteur & back to Australia @wehi-research.bsky.social. An enlightening #TheMicroscopists with Kelly Rogers incl the challenges of balancing research/facilities/& staff.
+ wanting to be a forester & passions outside of work.
Stream: bit.ly/microscopist...

The Microscopists | Kelly Rogers (Walter and Eliza Hall Institute)

In this episode of The Microscopists, Peter O’Toole sits down with Kelly Rogers, Head of the Division of Advanced Technology and Biology at the Walter and Eliza Hall Institute (WEHI) in Melbourne.K...

Reposted by Jean-Yves Tinévez, Alan McNally

Institut Pasteur | 130 years of biomedical research @pasteur.fr · 3d

137 years ago today 🎂 Institut Pasteur opened in Paris (Nov 14, 1888 🏛️)

Funded by 100K+ donors after the rabies vaccine success, it launched a scientific legacy:
🔬 10 Nobel Prizes
🌍 32 Pasteur Network Institutes
💉 Countless lives saved

From rabies to COVID-19, the mission continues.

november 14, 1888 : inauguration of the Institut Pasteur ©Institut Pasteur

Reposted by Jean-Yves Tinévez

Rita Strack @ritastrack.bsky.social · 4d

I won't talk about NMeth @natmethods.nature.com forever (probably), but I do want to brag a bit about the November focus issue on cell segmentation and tracking, which is many ways is my last hurrah (and final editorial) for the journal. I am so proud of these papers!! www.nature.com/nmeth/volume...

Jean-Yves Tinevez @jytinevez.bsky.social · 7d

Copenhagen I am in you!

Reposted by Jean-Yves Tinévez

SVI Huygens @svi.nl · 12d

Master colocalization! Join our webinar Nov. 11 for multiple time zones: svi.nl/WebinarSched...

Reposted by Jean-Yves Tinévez

Kevin Terretaz @kwolbachia.bsky.social · 13d

My new ImageJ / Fiji toolkit is out 🔥! The goal is to make image handling & visualization easy, with an intuitive interface! Install it on Fiji with the "Image Viewer" update site
#microscopy #ImageJ #FluorescenceFriday #microscopyMonday
imagej.net/plugins/imag...

Jean-Yves Tinevez @jytinevez.bsky.social · 16d

When in Rome, do as the Romans do
Go teams!

Jean-Yves Tinevez @jytinevez.bsky.social · 17d

Some good news

Guillaume Frasca @gfrasca.bsky.social · 17d

The Friday crème brûlée is back! @institutpasteur.bsky.social

Reposted by Jean-Yves Tinévez

Guillaume Frasca @gfrasca.bsky.social · 17d

The Friday crème brûlée is back! @institutpasteur.bsky.social

Reposted by Jean-Yves Tinévez

Science Étonnante @scienceetonnante.com · 17d

Nouvelle vidéo ! LES MACHINES DE TURING, où l’on essaye de comprendre pourquoi, en un certain sens, tous les ordinateurs de l’Univers se valent, et ont tous les mêmes points aveugles.

youtu.be/o_swEgbBhMU

Les Machines de Turing

YouTube video by ScienceEtonnante

Reposted by Jean-Yves Tinévez

BioImaging North America @bioimagingna.bsky.social · 17d

#HappyFluorescenceFriday #microscopycommunity
Got an idea for an image analysis workshop? Share it at Halfway to I2K: Online Tutorials on Image Analysis (Nov 17–19, 2025), held with Zoom Events!
Submit by Oct 31: buff.ly/lMhK4vz
Website: buff.ly/QP36RZB
Register for the workshops: buff.ly/8nNAI18

Airtable | Everyone's app platform

Airtable is a low-code platform for building collaborative apps. Customize your workflow, collaborate, and achieve ambitious outcomes. Get started for free.

Jean-Yves Tinevez @jytinevez.bsky.social · 20d

10

Reposted by Jean-Yves Tinévez

Institut Pasteur | 130 years of biomedical research @pasteur.fr · 20d

👩‍🔬 Cette semaine, 5 chercheuses de l’Institut Pasteur font la Une des médias !

De la santé des femmes au cancer, de la psychiatrie à l'intelligence artificielle... Leurs recherches font avancer la science.
Thread ⤵️ 1/6

Reposted by Jean-Yves Tinévez

Ricardo Henriques @henriqueslab.bsky.social · 21d

🦠🔬🤖🧑‍💻 #mAIcrobe interface preview, a platform for #DeepLearning enabled bacterial image-based phenotyping. Check it out
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...

Reposted by Jean-Yves Tinévez

Institut Jacques Monod @ijmonod.bsky.social · 21d

#JobOffer

💼 Postdoctoral Researcher (M/F) in Biophysics of Bacterial Infection
📆 January 1st, 2026
📍Institut Jacques Monod, Bonazzi Lab

Apply before November 6th 🔗 emploi.cnrs.fr/Offres/CDD/U...

Reposted by Jean-Yves Tinévez

Michalis Averof @michalis-averof.bsky.social · 22d

What are these?

You are looking at embryos of a sea squirt. Each of the 'soap bubbles' is a living cell, about a fourtieth of a millimetre in size. The outlines of the cells are visible thanks to fluorescent markers identified by Hitoyoshi Yasuo @hitoyas.bsky.social

see doi.org/10.1101/2024... 🧵

Reposted by Jean-Yves Tinévez

Dave Barry @david-j-barry.bsky.social · 25d

Want to automate workflows in #FIJI?
Don't know where to start?
We (@lankylaste.bsky.social, Alicja Skórkowska and Sara Salgueiro Torres) have added a step-by-step tutorial to the wiki to get you started.

Thanks @ctrue.bsky.social for adding!

imagej.github.io/tutorials/ba...

Batch Processing with the ImageJ Macro Language

The ImageJ wiki is a community-edited knowledge base on topics relating to ImageJ, a public domain program for processing and analyzing scientific images, and its ecosystem of derivatives and variants...

imagej.github.io

Reposted by Jean-Yves Tinévez

Dave Barry @david-j-barry.bsky.social · 27d

🇬🇧 Are you based in the UK?
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑‍🤝‍🧑 Want to spend time supporting external users?

The UK BioImage Analysis Network (UK-BIAS) might be for you.

Apply below before November 5th.

forms.gle/XhP15nxg2ZgW...

Expression of Interest: UK Bioimage Analysis Network (UK-BIAS)

The UK node of Euro-BioImaging, a major European initiative providing open access to biological and biomedical imaging technologies, currently offers assistance with Biological Image Data Analysis. Ho...

Reposted by Jean-Yves Tinévez

ScaDS.AI Dresden/Leipzig @scadsai.bsky.social · Oct 18

The next @unileipzig.bsky.social's #LunchLectures will take place on October 23, this time featuring @haesleinhuepf.bsky.social from @scadsai.bsky.social . He will give a lecture on “How generative AI influences research and teaching.”

👉 https://f.mtr.cool/srahlhpary

Reposted by Jean-Yves Tinévez

Pedro Escoll @pescoll.bsky.social · Oct 16

New paper finally out on @natcomms.nature.com! Led by first author Maria Dramé with the collaboration of Francisco Garcia, @cbuch.bsky.social and @jytinevez.bsky.social at @pasteur.fr. Early mitochondrial signals in single human macrophages predict later Legionella replication. Link + details👇🧵

Reposted by Jean-Yves Tinévez

Institut Pasteur | 130 years of biomedical research @pasteur.fr · Oct 15

Six Pasteur scientists win 2025 L’Oréal-UNESCO Young Talents! 🌟 Yolène: Caribbean plants vs dengue mozzies; Leah: gastruloid biophysics; Marion: cancer immunotherapy; Eulalie: menstruation genetics; Sabrina: fixing hearing nerve; Marie: TB & sarcoid immunity. #WomenInScience

Jean-Yves Tinevez @jytinevez.bsky.social · Oct 13

Thank you so much @globias.bsky.social , @bethcimini.bsky.social & Christa Walther!

During the foundation phase of the association, several work groups are developing the different aspects of the CZI grant and the main cornerstones of the project. Each work group is led by a steering...

www.globias.org

Jean-Yves Tinevez @jytinevez.bsky.social · Oct 13

I am slow to start but I discuss how we are organized, what are our missions and activities, and how the former protect the latter. I also give pointers on how to estimate capacity and demand and match analysts to them.

I hope you enjoy it. I did.

Jean-Yves Tinevez @jytinevez.bsky.social · Oct 13

Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.

I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social

research.pasteur.fr/en/team/imag...
⬇️

Reposted by Jean-Yves Tinévez

Stephan Preibisch @preibischs.bsky.social · Oct 11

The connectome of the entire male Drosophila central nervous system is out!! Acquired using FIB-SEM @ 8x8x8nm, we aligned 7.5 mio 2D images aligned into one seamless 3D volume, which was used to segment & proofread neurons and synapses. @hhmijanelia.bsky.social

www.biorxiv.org/content/10.1...

Reposted by Jean-Yves Tinévez

Institut Pasteur Education @pasteuredu.bsky.social · Oct 10

📢Apply now – Mother-Child Dyad: Current Evidence in a Global Perspective Pasteur Course

This 1 week intensive course provides an up-to-date overview of maternal & child health in a global context, with a focus on the first 1,000 days of life, a critical period for lifelong health

👉 bit.ly/46ZKZpj

Reposted by Jean-Yves Tinévez

Institut Pasteur | 130 years of biomedical research @pasteur.fr · Oct 9

Pour le Pasteurdon, on a donné des appareils photos aux chercheurs 📸👩‍🔬
Voici ce qu’ils ont capturé ! 
#pasteurdon

Reposted by Jean-Yves Tinévez

DrLachie @drlachie.bsky.social · Oct 8

Hey microscopists! On behalf of @ausbias.org I'd like to invite you to fill in our inaugural survey of how you perform and interface with bioimage analysis in your work! Help shape our society, and help us understand how we can best serve the wider microscopy community! ausbias.org/survey-2025/

Reposted by Jean-Yves Tinévez

Morgan Schwartz @msschwartz21.bsky.social · Oct 7

#geff v1 is released! 🎉 GEFF is a zarr-based Graph Exchange File Format with special support for tracking applications in Python and Java. Thank you to all the amazing developers who contributed at the Janelia 2025 Trackathon! liveimagetrackingtools.org/geff/