Edward Pimentel
edwardpimentel.bsky.social
Edward Pimentel
@edwardpimentel.bsky.social
Stanford Postdoc (Soh Lab) 🧬
UW-Madison PhD (Martell Group) 🧪
Loves Chemistry, Books, Bread, Bikes and Plants.
🇺🇸 🇧🇦 🇷🇴 🇳🇱 🇸🇩 🇧🇪
Reposted by Edward Pimentel
Check out our review on DNA-scaffolded catalysis! This link provides free full text access until the end of 2025: authors.elsevier.com/a/1m43W9CpcY.... Big thanks to co-authors @edwardpimentel.bsky.social , Ashley Ogorek, @ethan-hartman-125.bsky.social , and Caleb Cox
November 13, 2025 at 3:21 AM
Our mini-review on DNA-scaffolded catalysis is out today in @cp-trendschem.bsky.social! It's an interesting look at this unique intersection of catalysis, DNA nanotechnology and supramolecular chemistry. Give it a read! #chemsky doi.org/10.1016/j.tr...
Redirecting
doi.org
November 9, 2025 at 5:26 AM
Just stumbled across Orca Sciences' technical articles. Interesting reads! www.orcasciences.com/reading-diff...
Orca Sciences
www.orcasciences.com
November 1, 2025 at 11:16 PM
Interesting article about RNA structure prediction - we're always wishing we had better structure prediction tools for aptamers, and this article sums up the challenges very neatly! www.owlposting.com/p/rna-struct...
RNA structure prediction is hard. How much does that matter?
4.8k words, 22 minute reading time
www.owlposting.com
September 26, 2025 at 10:09 PM
Reposted by Edward Pimentel
In @science.org this week @zachwickens.bsky.social and collaborators find a way to do Z-selective elimination using thianthrenium chemistry in a versatile route to Z olefins.

chemsky 🧪

www.science.org/doi/10.1126/...
Stereo-reversed E2 unlocks Z-selective C–H functionalization
The stereoselective functionalization of C–H bonds represents a central challenge in modern organic synthesis. Despite decades of innovation in C–H activation chemistry, methods for Z-selective functi...
www.science.org
September 18, 2025 at 10:14 PM
Reposted by Edward Pimentel
Happy to share our latest in @jacs.acspublications.org led by Xiao and @genlichem.bsky.social on a new activity-based sensing probe for Cu(I) using a fast alkyne-directed cleavage reaction to discover Mn-sensitized #cuproptosis as a novel type of metal-metal crosstalk! pubs.acs.org/doi/abs/10.1...
An Alkyne-Directed Cleavage Approach for Activity-Based Cu(I) Sensing Reveals Manganese-Promoted Sensitization of Cuproptosis
Copper is an essential element for sustaining life. However, disruptions in copper homeostasis underpin disease, as illustrated by cuproptosis, an emerging form of cell death resulting from aberrant a...
pubs.acs.org
September 16, 2025 at 10:42 PM
New preprint from the Soh lab! Nice work by my labmate Haji - new highly specific steroid aptamers identified using our modified sequencer platform! These don't have the 3wj structure and promiscuity of previous aptamers - I've used it myself! #chemsky www.biorxiv.org/content/10.1...
Discovery of high-specificity DNA aptamers for progesterone using a high-throughput array platform
Aptamer-based biosensors offer several advantages for detecting small molecules, including chemical stability and compatibility with diverse sensing formats. However, developing highly specific DNA ap...
www.biorxiv.org
September 16, 2025 at 4:31 PM
Reposted by Edward Pimentel
Great perspective by @dereklowe.bsky.social on recent advances in cell surface #glycoRNA biology, including new work from @raflynn5.bsky.social and collaborators identifying an immune silencing effect of N-glycans on activation of TLRs by Acp3U-RNA (www.nature.com/articles/s41...)
September 9, 2025 at 6:19 PM
Fascinating work by @philiplampkin.bsky.social from the Gellman lab about preorganization in bifunctional catalysts! Controls like the alkyl-tethered catalysts in this paper are important for assessing the role of the supramolecular scaffold, but rarely investigated. Give it a read!
September 8, 2025 at 9:04 PM
Reposted by Edward Pimentel
A very apt Venn diagram (dunno original source)
August 29, 2025 at 7:48 PM
I loved reading about the Dickinson lab's masked acylating reagent approach to proximity labeling in Nature Chemistry last year (www.nature.com/articles/s41...), and was really excited when @jeffmartell.bsky.social and my labmate Ashley got involved. Check the pre-print out!
August 29, 2025 at 12:22 AM
Cool grant program by ACS that supports graduate students whose Masters/PhD is being impacted by canceled grants: www.acs.org/funding/gran...
ACS Graduate Student Success Grant - American Chemical Society
To support graduate students (M.S. and Ph.D.), within one year of degree completion, whose education and training were disrupted due to recent termination or cancellation of research grants. Funding w...
www.acs.org
August 22, 2025 at 8:43 PM
Reposted by Edward Pimentel
Scientists!

@skypeascientist.bsky.social matches scientists with classrooms, libraries, & more for virtual Q&As! It's easy and fun!

We are looking for 750 more volunteers by 8/15

If you're down to chat with 1-5 classrooms this semester, sign up here
www.skypeascientist.com/sign-up.html
August 7, 2025 at 3:10 PM
Really proud to have been a part of this!
Excited to share our new preprint, which was years in the making! chemrxiv.org/engage/chemr...
New reactions are typically developed by trial and error. How can we speed up this process? Read on to learn how we used DNA scaffolding to perform >500,000 parallel reactions on attomole scale.
1/n
DNA-Scaffolded Ultrahigh-Throughput Reaction Screening
Discovering and optimizing reactions is central to synthetic chemistry. However, chemical reactions are traditionally screened using relatively low-throughput methods, prohibiting exploration of diver...
chemrxiv.org
August 14, 2025 at 6:35 PM
Reposted by Edward Pimentel
A walk around your lab might reveal some true relics of the past. Derek Lowe asks which equipment will survive the test of time, and which may have to move over for something fancy and new – and makes some predictions of his own.
‘Creative destruction’ in the chemistry lab
Some obsolete lab equipment is quickly replaced, while other items are stubbornly persistent. What modern tech will survive to the 2060s?
www.chemistryworld.com
August 14, 2025 at 4:07 PM
Really great article about teaching undergraduate chemistry the sets a higher bar for the "unknown puzzles" we all remember solving (some fondly, other not so much)! This authentic chemistry learning approach was part of what made being a TA at UW-Madison so great! doi.org/10.1021/acs....
Spectroscopic Unknown Puzzles from Real Data─A More Authentic Pedagogical Approach with Epistemological Implications
We present example assessments featuring spectroscopic unknown puzzles, where the solution to the puzzle is the outcome of a known chemical reaction. These spectroscopic exercises engage students in a substantially more authentic manner than the conventional structure elucidation puzzles that are ubiquitous in organic chemistry instruction. Students use the same information available to practicing organic chemists, i.e., the chemicals added to the reaction vessel and information regarding the intended reaction outcome, to support their interpretation of GC-MS, IR, and NMR data. This centers the purpose of spectroscopy and spectrometry on understanding chemical phenomena, often chemical reactions, rather than on solving inauthentic unknown puzzles which are not connected to a chemical phenomenon. We anticipate that repeated use of spectroscopy and spectrometry in this manner will communicate to students why organic chemists highly value these techniques and how they are used to construct knowledge in organic chemistry.
doi.org
August 13, 2025 at 7:02 PM
Reposted by Edward Pimentel
Our July issue is live!

www.nature.com/nchembio/vol...

The cover image depicts a target protein bound to a high-affinity aptamer that gets enriched after a single selection round with multiple elution steps.
June 27, 2025 at 1:59 PM