Clément Caporal
LightNews LightNews
caporalclement.bsky.social
Clément Caporal
@caporalclement.bsky.social
470 followers 470 following 3 posts
PhD Student @LabOptBio. In love with education, sciences, and poetry. (Bioimage analysis) He/him
Posts Replies Media Videos
Reposted by Clément Caporal
helenajambor.bsky.social
Public service announcement: strongly recommend adding your names to ALL slides, helps us here reporting on social media and find you again..😉
#cbias2025
November 24, 2025 at 12:10 PM
Reposted by Clément Caporal
jacobtomlinson.dev
For Python package management I use a mixture of pixi, uv and conda depending on the task I'm doing.

I wrote up a long form post about the history of these tools, why each one exists, and why I settled on these choices in my workflow.

jacobtomlinson.dev/posts/2025/p...
Python package managers: uv vs pixi?
When I talk to people about Python package management in 2025 I see the following tools in active use; uv, pixi, pip, conda, mamba, micromamba and poetry. There may be others, but I don’t hear much ab...
jacobtomlinson.dev
November 18, 2025 at 12:56 PM
Reposted by Clément Caporal
robinjournot.bsky.social
🚨 New preprint!
We built a single-cell atlas of 14 multilayered epithelia and revealed a conserved transcriptomic program guiding tissue architecture and fate composition. Our work brings decades of tissue-specific studies together into a unified evo-devo framework.
www.biorxiv.org/content/10.1...
November 17, 2025 at 12:33 PM
Reposted by Clément Caporal
bethcimini.bsky.social
Just 4 days until the start of I2K and its 33 totally free image analysis tutorials and events! Please share with your "home networks", especially early career researchers - the videos will be amazing and high-impact no matter how many people attend live, BUT (1/x)
A fluorescent embryo on black text, with the words Halfway to I2K: Virtual Tutorials on Image Analysis November 17-19, 2025 Virtual Conference for beginners to developers i2kconference.org Image Credit - "Sweet Embryo",Travis D. Carney, BINA Image Contest 2024
November 13, 2025 at 2:32 PM
Reposted by Clément Caporal
virginieuhlmann.bsky.social
We wrapped up the symposium part of our 2025 International OME-NGFF workshop on Tuesday. What a phenomenal two days! I'm humbled by the incredible positive energy, talent, and enthusiasm that filled this event.
November 13, 2025 at 5:08 PM
Reposted by Clément Caporal
kevin-dean.bsky.social
A game changer in our hands... www.nature.com/articles/s41...
Universal consensus 3D segmentation of cells from 2D segmented stacks - Nature Methods
u-Segment3D is a universal framework that translates and enhances 2D instance segmentations to a 3D consensus instance segmentation without training data. It performs well across diverse datasets, inc...
www.nature.com
November 11, 2025 at 6:48 PM
Reposted by Clément Caporal
napari.fosstodon.org.ap.brid.gy
Remember that survey about how we can sustain napari development? We extended the deadline until the 16th, AoE! Blog post: https://napari.org/island-dispatch/blog/sustainability_survey.html
Survey: https://napari.typeform.com/sustainability
If you use napari at all we would be super grateful if […]
Original post on fosstodon.org
fosstodon.org
November 10, 2025 at 1:24 PM
Reposted by Clément Caporal
events.embl.org
Join us for the EMBO | EMBL Symposium 'AI and biology' 🤖🧬

Explore how AI transforms biological research – from foundation models for biology to generative modelling 🧠💡

10 – 13 March 2026
EMBL Heidelberg and Virtual
Submit your abstract: s.embl.org/ees26-02-bl

#EESAIBio #AI
October 29, 2025 at 9:55 AM
Reposted by Clément Caporal
bardinlab.bsky.social
Starting Monday!!! If you are in Paris, feel free to drop in for this exceptional course!
bardinlab.bsky.social Bardin Lab @bardinlab.bsky.social · Jun 13
Students (Master's/PhD), do not miss this fantastic Developmental Biology course of @sorbonne-universite.fr and @institutcurie.bsky.social - It is FREE and open to international students, however, room and board + travel are not included.

training.institut-curie.org/courses/deve...
October 19, 2025 at 8:16 AM
Reposted by Clément Caporal
lemonde.fr
La créatrice du programme d’échange Erasmus, Sofia Corradi, est morte
La créatrice du programme d’échange Erasmus, Sofia Corradi, est morte
Quelque 16 millions de jeunes ont pu étudier dans d’autres pays d’Europe grâce au projet lancé en 1987 par cette professeure italienne qui s’est éteinte à l’âge de 91 ans.
www.lemonde.fr
October 19, 2025 at 2:22 AM
Reposted by Clément Caporal
gioelelamanno.bsky.social
🧠 The Lipid #Brain Atlas is out now! If you think #lipids are boring and membranes are all the same, prepare to be surprised. Led by @lucafusarbassini.bsky.social with Giovanni D'Angelo's lab, we mapped membrane lipids in the mouse brain at high resolution.
www.biorxiv.org/cgi/content/...
October 16, 2025 at 6:23 AM
Reposted by Clément Caporal
bethcimini.bsky.social
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
A flyer for the Bioimage Analysis Beginnings Bootcamp - blue and white with a picture of cells on the top. It says "Learn core bioimage analysis skills using open-source tools for light microscopy. Open to participants at all skill levels." It also says it will be held a the Broad Institute, 415 Main Street, Cambridge MA USA, on Monday to Friday January 12th-16, 2026, from 9-5pm. Registration is $750 academic, $1250 industry, and applications are open at broad.io/BAB3
October 14, 2025 at 9:31 PM
Reposted by Clément Caporal
dev-journal.bsky.social
Issue 16 is complete!

On the cover: Embryonic eye of an anole lizard stained for nuclei and F-actin. The image was acquired at the 2025 MBL Embryology course by Arthur Boutillon and was the Editor's choice from the Node image competition.

thenode.biologists.com/vote-for-you...
Cover: Embryonic eye of an anole lizard stained for nuclei (DAPI, blue) and F-actin (Phalloidin, orange), imaged by spinning disc confocal microscopy and processed using ImageJ. The image was acquired at the 2025 MBL Embryology course by Arthur Boutillon and was the Editor's choice from the Node image competition.
September 9, 2025 at 12:19 PM
Reposted by Clément Caporal
laboptbio.bsky.social
(2025/10/08) Congratulations to @chiarastringari.bsky.social on the defense of her Habilitation à Diriger les Recherches (HDR) "Label-free multimodal non-linear optical microscopy for functional imaging of living tissues" !
October 9, 2025 at 9:50 AM
Reposted by Clément Caporal
dsbsoc-arts.bsky.social
🎨🔬 CALLING ALL ARTISTS & DEEP-SEA SCIENTISTS!

💡 Open to ALL artists & scientists

🗓 Deadline: August 31

📍 Apply via the short form in our bio / link below!

🔗 forms.gle/SftLbez3ML2j...
Are you inspired by the mysteries of the deep? We're launching a new initiative ArtSea Matchmaking that pairs artists and scientists for creative collaborations rooted in deep-sea science. Together, you'll co-create compelling work that bridges disciplines and reaches wider audiences through exhibitions and outreach.
June 25, 2025 at 7:14 AM
Reposted by Clément Caporal
karalmckinley.bsky.social
Lab’s 1st preprint!

Menstruation is understudied due to societal taboos + a biological challenge: mice (a key system for research + drug discovery) don’t menstruate.

@cagricevrim.bsky.social made menstruating mice + used them to discover early events in menstruation.

He is on the job market!
October 10, 2025 at 1:26 PM
Reposted by Clément Caporal
cagricevrim.bsky.social
I’m thrilled to share my postdoc work and the first paper from the McKinley Lab! 🎉
@karalmckinley.bsky.social
We built the first transgenic model of menstruation in mice.
We used it to uncover how the endometrium organizes and sheds during menstruation. 🧪
www.biorxiv.org/content/10.1...
🧵
Induction of menstruation in mice reveals the regulation of menstrual shedding
During menstruation, an inner layer of the endometrium is selectively shed, while an outer, progenitor-containing layer is preserved to support repeated regeneration. Progress in understanding this co...
www.biorxiv.org
October 10, 2025 at 12:50 PM
Reposted by Clément Caporal
turkubioimaging.bsky.social
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️
jobs.helsinki.fi/job/Helsinki...
#jobopening
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
jobs.helsinki.fi
October 10, 2025 at 1:58 PM
Reposted by Clément Caporal
jamesbriscoe.bsky.social
The @crick.ac.uk is recruiting Early Career Group Leaders

- Lab set-up, research costs, salaries for up to 5 researchers
- Support for up to 12 years
- Access to our core facilities
- Competitive salary
- Fantastic colleagues
- All areas of biology

Deadline 27 Nov

www.crick.ac.uk/careers-stud...
Early career group leaders
We appoint researchers from across biology and biomedicine to set up their first groups at the Crick.
www.crick.ac.uk
October 10, 2025 at 8:20 AM
Reposted by Clément Caporal
ilastik-team.bsky.social
Segment large images without tiling artifacts: sharing our work that should have been presented at ICCV in 2 weeks - the brilliant first author Elena can’t go because of visa issues.
The paper: arxiv.org/abs/2503.19545 1/🧵
Large images have to be broken into tiles both for training and inference with neural networks. The tile predictions then need to be merged to produce the final volume prediction.
October 9, 2025 at 12:56 PM
Reposted by Clément Caporal
jytinevez.bsky.social
Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...
Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
forum.image.sc
October 7, 2025 at 12:39 PM
Reposted by Clément Caporal
prevedel-lab.bsky.social
@embl.org Heidelberg is looking for a new Head of Scientific Instrumentation! This is an exciting opportunity at the interface between scientific research and technology development, overseeing our mechanical and electronic workshops!
embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
Head of Scientific Instrumentation Workshops
EMBL is a world leader in scientific research and at the forefront in the development of cutting-edge technologies. It operates across six sites in Heidelberg (headquarters), Barcelona, Cambridge, Gre...
embl.wd103.myworkdayjobs.com
September 12, 2025 at 6:48 PM
Reposted by Clément Caporal
bioimagingna.bsky.social
#HappyFluorescenceFriday!

#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!

Learn more & sign up: buff.ly/esGIotD
September 19, 2025 at 4:08 PM
Reposted by Clément Caporal
mdc-bimsb.bsky.social
Passionate about #SystemsBiology and ready to lead your own research group?
Join us at the forefront of discovery — apply now to be a #GroupLeader at the NOVA Institute for Medical Systems Biology, in beautiful Lisbon, PT!

Appl. by Oct 8:
www.nature.com/naturecareer...

#ScienceJobs #JobOffer
September 29, 2025 at 9:52 AM
Reposted by Clément Caporal
iarganda.bsky.social
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
cvpd.github.io
September 30, 2025 at 11:01 AM