Had a great time in Janelia this summer developing #geff with this amazing group of cell tracking enthousiasts and software engineers! #geff is a file format for tracking data allowing universal cross-tool communication for a wealth of tracking tools, amongst others our #ultrack and #inTRACKtive 🚀

🍾What a day 🥳 Two papers of the Royer lab in Nature Methods today, including #inTRACKtive! Check out Loïc's thread below for the details ⬇️

Over the next days, I will share the exciting new features we have added since the original preprint. Stay tuned!

Saying goodbye to beautiful @hhmijanelia.bsky.social, after an intense two weeks trackhathon. Organized by legends Caroline Malin-Mayor and Morgan Schwartz in the @janfunkey.bsky.social.

It has been awesome and productive. Thank you!!

Enjoying two weeks of cell tracking tools, file formats, and collaboration, all at the beautiful Janelia Research Campus. What a place! 🤩🔬🧪 @hhmijanelia.bsky.social

Microscopy Nodes is now up on bioRxiv! 🚀

This is a Blender extension that seamlessly integrates and visualizes 3D microscopy data (TIF & @zarr.dev).

High-quality volume rendering for anyone, in both EM and fluorescence, regardless of computational expertise! 🔬

www.biorxiv.org/content/10.1...

Little Nanobiology reunion in San Diego. Great to see multiple professors/alumni at the Cell Bio conference! 🙌

@tudelft.bsky.social #nanobiology #ASCB24 #CellBio2024

Happy to be in sunny☀️San Diego for ASCB Cell Bio! Tomorrow I will present #Ultrack and #inTRACKtive (poster B513) at 11:15 am. Swing by the CZI+@czbiohub.bsky.social
booth (#119) for live demos of these tools + #napari & #zebrahub 🐠 Looking forward to connect!🤩🧪🔬

#CellBio2024 #ASCB24 #celltracking

Join us next Friday at UC San Diego for a day full of microscopy 💡🔬, mass spec, and AI! Shout out to @manorlaboratory.bsky.social for putting this together! I will present our recent work on cell tracking algorithms and visualization with #Ultrack and #inTRACKtive🧪

#CellBio2024

We modified our STED🔬to make it more efficient ('smart') to acquire high-resolution data of small and rare objects in a 3D cell volume. This enabled collecting a large amount of data in a fully automated fashion. With that, we visualized the ulra-structure a small nuclear body, the paraspeckle👇🏻(1/3)

PSFs are just Gaussians, right??

Not when your fluorophore💡is close to a nanoparticle 🟠!
Excited to share our recent ACS Nano paper 🥳 in which we present a novel PSF-fitting approach for localization microscopy near nanoparticles.

pubs.acs.org/doi/full/10....

Main findings below in🧵[1/10]

Indeed! Hello everyone!

🚀Thrilled to announce #inTRACKtive: a web-based tool for exploring massive cell-tracking datasets, no software installation required! Open your browser and dive into terabytes of developmental biology data 🐭🪰🪱🪲🐠

Preprint:
biorxiv.org/content/10.1...

Repository:
github.com/royerlab/inT...

🧵1/n

I will be reposting a few threads from the 🐦 app to populate my profile and share the science we are doing :)

#HiSciSky, time for an introduction! I work with Loïc Royer at the CZ Biohub in San Francisco. My work focuses on image analysis, light-sheet microscopy, and AI. I did my PhD in SMLM, so expect a mix of localization microscopy, cell tracking, light-sheet movies, data viz, and super-resolution!💡🧪🔬

inTRACKtive - A Web-Based Tool for Interactive Cell Tracking Visualization https://www.biorxiv.org/content/10.1101/2024.10.18.618998v1