Micha Sam Brickman Raredon
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msbr89.bsky.social
Micha Sam Brickman Raredon
@msbr89.bsky.social
Scientist/Engineer. Assistant Professor of Anesthesiology @ Yale. Tissue Biology, Lung Regeneration, Data Visualization. Here to learn. https://RaredonLab.com
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United States Disappeared Tracker

public.tableau.com/views/United...
Reposted by Micha Sam Brickman Raredon
Martin Peterson's creative response to being banned from teaching Plato (shared with his permission).
January 8, 2026 at 5:38 PM
Reposted by Micha Sam Brickman Raredon
The cost of sequencing a human genome has fallen over 100,000 fold in nominal terms since 2001.

In a new visualization, I've added some of the key advances in sequencing during that timeline:
January 8, 2026 at 8:16 AM
Reposted by Micha Sam Brickman Raredon
Reposted by Micha Sam Brickman Raredon
"I’m going to pause here just to review: an institution that purports to be a university has told a philosophy professor he is forbidden from teaching Plato."

surreal times

dailynous.com/2026/01/06/t...
Texas A&M Bans Plato - Daily Nous
Drop the race and gender material from your course and the Plato readings, or teach a different course. You have a day to decide. That's a paraphrase of what Martin Peterson, professor of philosophy a...
dailynous.com
January 7, 2026 at 10:36 AM
Reposted by Micha Sam Brickman Raredon
The resolution of microscopes has increased over 10,000 fold over the last 200 years.

It's allowed scientists to examine not only cells, but bacteria, then viruses, their protein structure, and, eventually, the individual atoms that comprise them.
January 7, 2026 at 4:42 PM
Reposted by Micha Sam Brickman Raredon
NEW article by me!

We can now visualize pathogens down to atoms; design vaccines in weeks; manufacture them in microbial factories; engineer them more precise than ever before.

We're living through a golden age of vaccine development, but only if we continue to invest in them.
The golden age of vaccine development - Works in Progress Magazine
The first vaccine was a lucky accident. Now we can design new vaccines in weeks, atom by atom.
worksinprogress.co
January 7, 2026 at 3:20 PM
Reposted by Micha Sam Brickman Raredon
Would love to hear expert views on this paper. It appears to show that the operationalization of brain activity the field has relied on for 3 decades—the BOLD response—is not actually a sensible measure of brain activity.

www.nature.com/articles/s41...
BOLD signal changes can oppose oxygen metabolism across the human cortex - Nature Neuroscience
Using quantitative brain imaging, the authors show opposite fMRI BOLD signal to metabolic activity due to variable oxygen extraction across the human cortex. This questions the canonical interpretatio...
www.nature.com
January 5, 2026 at 11:55 AM
Reposted by Micha Sam Brickman Raredon
Happy new year! My all sky camera imaged the sky every 15 seconds and this picture shows what happened in the sky in 2025. It shows the length of the night and day with the hourglass shape, the monthly lunar cycle with the diagonal bands, the elevation of the Sun at local noon, and lots of clouds.
January 1, 2026 at 8:54 PM
Reposted by Micha Sam Brickman Raredon
Reposted by Micha Sam Brickman Raredon
Interested in a #DataViz book club? 👇

(I might slightly biased but I promise it's great book! 😉)

#RStats #ggplot2
Bookclub alert ✨

📖The Art of Data Visualization with ggplot2 by @nrennie.bsky.social

If you are interested, join @dslc.io Slack and mention your availability in the bookclub channel.

Book: nrennie.rbind.io/art-of-viz/
Slack: dslcio.slack.com
The Art of Data Visualization with ggplot2
The TidyTuesday Cookbook
nrennie.rbind.io
January 5, 2026 at 2:19 PM
Reposted by Micha Sam Brickman Raredon
I'm teaching Statistical Rethinking again starting Jan 2026. This time with live lectures, divided into Beginner and Experienced sections. Will be a lot more work for me, but I hope much better for students.

I will record lectures & all will be found at this link: github.com/rmcelreath/s...
December 9, 2025 at 1:58 PM
Reposted by Micha Sam Brickman Raredon
Integrative transcriptomic identification of cellular senescence beyond marker limitations https://www.biorxiv.org/content/10.64898/2026.01.02.697374v1
January 3, 2026 at 1:46 AM
Reposted by Micha Sam Brickman Raredon
Modern biology research is biased towards investigating genes that are widely conserved and present in humans. What about genes that ARE widely conserved but NOT present in humans? Can genes missing from humans tell us something about what makes our biology different from that of other animals? 1/8
December 31, 2025 at 7:29 PM
Reposted by Micha Sam Brickman Raredon
Sitting a stewing in frustration isn't nearly as cathartic as just designing a poster. Let's see how often I remember that in 2026.
December 31, 2025 at 3:27 PM
Reposted by Micha Sam Brickman Raredon
The Hippo Pathway Regulates Corneal Endothelial Regeneration https://www.biorxiv.org/content/10.64898/2025.12.30.697046v1
December 31, 2025 at 4:30 PM
Reposted by Micha Sam Brickman Raredon
Commonly, tissue injury▶️local hypoxia
Bone fracture is an amazing exception☠️

Erythroid precursors pump up 🦴injury site oxygenation😎

Transferrin R1 Ab▶️
⏬Local hyperoxia
⏫Osteogenesis+Angiogenesis

🧵1/5
@amilangscience.bsky.social @jboerckel.bsky.social
#PNAS 2025
www.pnas.org/eprint/NJ8XC...
December 31, 2025 at 1:31 PM
Reposted by Micha Sam Brickman Raredon
"« S’il n’y a pas de frontière entre le réel et l’irréel, le bien et le mal, la vie et la mort, alors rien n’a de sens, et nous sommes confrontés à un abîme nihiliste. » Marci Shore
👉 La Russie.

www.iwm.at/publication/...
In a Post-Truth World: The Fate of Birth, Death, and Other Boundaries
If there is no boundary between real and unreal, good and evil, life and death, then nothing means anything, and we face a nihilist abyss.
www.iwm.at
December 31, 2025 at 2:12 AM
Reposted by Micha Sam Brickman Raredon
Trainable computation in molecular networks https://www.biorxiv.org/content/10.64898/2025.12.28.696421v1
December 30, 2025 at 2:02 PM
Reposted by Micha Sam Brickman Raredon
I always tell students if you ask a good question the article will write itself
December 30, 2025 at 4:12 AM
Reposted by Micha Sam Brickman Raredon
Explore 13 cell types in mouse embryo lungs through single-cell multiomics! CTCF emerges as crucial in lung morphogenesis & progenitor maintenance! PMID:41315351, Nat Commun 2025, @NatureComms https://doi.org/10.1038/s41467-025-65757-1 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Single-cell multiomics analysis reveals CTCF as a key regulator of lung morphogenesis and progenitor maintenance | Nature Communications
Lung development generates a complex tree-like architecture through proximal-distal patterning and branching morphogenesis. However, the gene regulatory programs governing embryonic lung development remain poorly understood. Here, we present a comprehensive single-cell multi-omics atlas of mouse embryonic lungs, integrating gene expression and chromatin accessibility profiles. Through systematic analysis, we identify 13 distinct cell types and map cis-regulatory elements, peak-to-gene linkages, and transcription factors underlying lung development. Leveraging this multi-modal dataset, we uncover lineage-determining transcription factors driving cell differentiation, including the Activated Protein-1 complex. We further delineate gene regulatory networks involving diverse transcription regulators, including CCCTC-binding factor (CTCF). Using the Ctcf conditional knockout mouse, coupled with histological and multi-omics analyses, we demonstrate that CTCF orchestrates lung progenitor main
doi.org
December 29, 2025 at 10:10 AM
Reposted by Micha Sam Brickman Raredon
The question rests on what people think education is for. If you think education is about earning certificates then genAI is a great "solution". If you think education is about teaching another mind how to do/understand something then genAI is an anathema to the process.
December 28, 2025 at 2:01 PM
Reposted by Micha Sam Brickman Raredon
I wrote a short essay on what I'm calling the AI Attribution Error. doi.org/10.59350/c3g...
December 28, 2025 at 12:43 PM
Reposted by Micha Sam Brickman Raredon
Morphogenesis & Organogenesis!
Part 1 (full) in the comments 👇

Comment if you'd like to be added (regardless of age or career stage!)

Please post your own biology-related starter packs using #BioStarterPacks

🧬🔬🪰🐟🐁🌱
June 26, 2025 at 9:40 PM
Reposted by Micha Sam Brickman Raredon
Single-cell RNA sequencing identifies progenitor dysfunction, inflammation and premature aging in ex vivo airway epithelium-derived from transplant recipients #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2025.12.26.696372v1
December 27, 2025 at 8:00 AM
Reposted by Micha Sam Brickman Raredon
Cross-species insights into placental evolution and diseases at the single-cell resolution #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2025.12.26.696571v1
December 27, 2025 at 8:00 AM