Kalika Prasad
@kalikaprasad.bsky.social
Professor, Indian Institute of Science Education and Research (IISER), Pune
http://thelabofregeneration.in/Kalika_Prasad/index.html
http://thelabofregeneration.in/Kalika_Prasad/index.html
Pinned
Kalika Prasad
@kalikaprasad.bsky.social
· Jul 25
Wound repair in plants guided by cell geometry
Mathew et al. show that growth conflicts reshape cells after injury, forming rhomboidal
geometries that trigger diagonal divisions. This reorients cell files to restore tapered
morphology. A two-step ...
www.cell.com
Our new paper is out!
1/14 How does an organ rebuild its shape after injury? It's not just about making new cells, but aligning them in the right direction — like bricks shaping a structure. We show that it's all driven by Cell Geometry!
www.cell.com/current-biol...
1/14 How does an organ rebuild its shape after injury? It's not just about making new cells, but aligning them in the right direction — like bricks shaping a structure. We show that it's all driven by Cell Geometry!
www.cell.com/current-biol...
Reposted by Kalika Prasad
What a glorious day--waking up to see this lovely preprint that does it all--a comprehensive scRNAseq atlas of leaf development, hints at the txn of new cell types, and great hypotheses about how GRNs may differ among related TFs
(and in other news, some hope for American Democracy)
(and in other news, some hope for American Democracy)
1/ Preprint alert:
🌾 The developing leaf of the wild grass Brachypodium distachyon at single-cell resolution
👉 doi.org/10.1101/2025...
A 70k-cell single-cell RNA-seq atlas of the developing grass leaf—from the shoot meristem to mature leaf tissues. @cerealcell.bsky.social @lbmountain.bsky.social
🌾 The developing leaf of the wild grass Brachypodium distachyon at single-cell resolution
👉 doi.org/10.1101/2025...
A 70k-cell single-cell RNA-seq atlas of the developing grass leaf—from the shoot meristem to mature leaf tissues. @cerealcell.bsky.social @lbmountain.bsky.social
November 5, 2025 at 2:16 PM
What a glorious day--waking up to see this lovely preprint that does it all--a comprehensive scRNAseq atlas of leaf development, hints at the txn of new cell types, and great hypotheses about how GRNs may differ among related TFs
(and in other news, some hope for American Democracy)
(and in other news, some hope for American Democracy)
Reposted by Kalika Prasad
Excited to announce our paper is out! Congrats to @pauformosa.bsky.social, @gweissbart.bsky.social, Frances Clark, and Xihang Wang on this fun and beautiful story. We answered a question about the randomness of giant cell spacing that I have had for at least 15 years.
How are #plant #leaf epidermal cells patterned? @roederlab.bsky.social &co show that the pathway controlling #GiantCell formation in #sepals also controls cell size in #Arabidopsis leaves, via cell-autonomous & stochastic specification @plosbiology.org 🧪 plos.io/491F1qQ
November 6, 2025 at 2:35 AM
Excited to announce our paper is out! Congrats to @pauformosa.bsky.social, @gweissbart.bsky.social, Frances Clark, and Xihang Wang on this fun and beautiful story. We answered a question about the randomness of giant cell spacing that I have had for at least 15 years.
Reposted by Kalika Prasad
Our work on mapping the dynamics of phospholipids during lateral root formation is now published in @jxbotany.bsky.social We show that PI(4,5)P₂ plays a key role: targeted reduction in pericycle promotes LR development.
→ academic.oup.com/jxb/advance-...
→ academic.oup.com/jxb/advance-...
November 4, 2025 at 9:19 AM
Our work on mapping the dynamics of phospholipids during lateral root formation is now published in @jxbotany.bsky.social We show that PI(4,5)P₂ plays a key role: targeted reduction in pericycle promotes LR development.
→ academic.oup.com/jxb/advance-...
→ academic.oup.com/jxb/advance-...
Reposted by Kalika Prasad
Timely review by Javi and Noel.
Environmental regulation of plant vascular networks #plantscience
Environmental regulation of plant vascular networks
The plant vascular system, a cornerstone of terrestrial adaptation, enables the long-distance transport of water, nutrients, and signaling molecules and provides mechanical support. Its anatomy also underpins stress resilience; yet, how environmental cues regulate vascular development remains poorly understood. In this review, we synthesize recent advances in molecular mechanisms underlying vascular plasticity in response to abiotic and biotic stresses, including temperature, light, drought, salinity, mechanical forces, nutrient deficiencies, and pathogens. We highlight conserved and species-specific pathways and discuss unresolved questions, such as how plants integrate multiple stressors to optimize vascular development. Finally, we propose applying single-cell omics and genome editing to decode these adaptive strategies with potential implications for crop resilience and sustainable biomass production.
dlvr.it
November 6, 2025 at 2:41 PM
Timely review by Javi and Noel.
Reposted by Kalika Prasad
Our lab studies how animals regenerate their body, e.g. how crustaceans regenerate broken legs. One of our aims is to understand if regeneration re-uses the gene networks that built the legs in the first place. Arthur Monternier, an artist in our team, captured the question in this cartoon.
October 27, 2025 at 3:25 PM
Our lab studies how animals regenerate their body, e.g. how crustaceans regenerate broken legs. One of our aims is to understand if regeneration re-uses the gene networks that built the legs in the first place. Arthur Monternier, an artist in our team, captured the question in this cartoon.
Reposted by Kalika Prasad
Join us in one of the most supportive and collaborative departments, led by an equally supportive chair!
Please repost!!:
We are searching for new AI-Bio faculty at Duke to be part of a new Discovery AI center. Looking for faculty who focus on pushing boundaries in ML model development in a highly interactive environment. DEADLINE for applications- Nov 1st!!
www.nature.com/naturecareer...
We are searching for new AI-Bio faculty at Duke to be part of a new Discovery AI center. Looking for faculty who focus on pushing boundaries in ML model development in a highly interactive environment. DEADLINE for applications- Nov 1st!!
www.nature.com/naturecareer...
Tenure-Track Assistant Professor Position –AI/ML for Cell Biology - Durham, North Carolina (US) job with Duke University School of Medicine | 12844591
Tenure-Track Assistant Professor Position –AI/ML for Cell Biology
www.nature.com
October 25, 2025 at 6:25 PM
Join us in one of the most supportive and collaborative departments, led by an equally supportive chair!
Reposted by Kalika Prasad
What are these?
You are looking at embryos of a sea squirt. Each of the 'soap bubbles' is a living cell, about a fourtieth of a millimetre in size. The outlines of the cells are visible thanks to fluorescent markers identified by Hitoyoshi Yasuo @hitoyas.bsky.social
see doi.org/10.1101/2024... 🧵
You are looking at embryos of a sea squirt. Each of the 'soap bubbles' is a living cell, about a fourtieth of a millimetre in size. The outlines of the cells are visible thanks to fluorescent markers identified by Hitoyoshi Yasuo @hitoyas.bsky.social
see doi.org/10.1101/2024... 🧵
October 26, 2025 at 8:55 AM
What are these?
You are looking at embryos of a sea squirt. Each of the 'soap bubbles' is a living cell, about a fourtieth of a millimetre in size. The outlines of the cells are visible thanks to fluorescent markers identified by Hitoyoshi Yasuo @hitoyas.bsky.social
see doi.org/10.1101/2024... 🧵
You are looking at embryos of a sea squirt. Each of the 'soap bubbles' is a living cell, about a fourtieth of a millimetre in size. The outlines of the cells are visible thanks to fluorescent markers identified by Hitoyoshi Yasuo @hitoyas.bsky.social
see doi.org/10.1101/2024... 🧵
Reposted by Kalika Prasad
The “Art of Longevity” — is it by any chance left-handed DNA?
October 26, 2025 at 11:46 AM
The “Art of Longevity” — is it by any chance left-handed DNA?
Reposted by Kalika Prasad
These are embryos of a jellyfish, made up of cells that are about a fiftieth of a millimetre in size. Their outlines are visible thanks to fluorescent markers identified by Sarah Asaf and @clytia-vlfr.bsky.social
see doi.org/10.1101/2024...
🧵
see doi.org/10.1101/2024...
🧵
October 26, 2025 at 2:12 PM
These are embryos of a jellyfish, made up of cells that are about a fiftieth of a millimetre in size. Their outlines are visible thanks to fluorescent markers identified by Sarah Asaf and @clytia-vlfr.bsky.social
see doi.org/10.1101/2024...
🧵
see doi.org/10.1101/2024...
🧵
Reposted by Kalika Prasad
Understanding #microtubule dynamics: The synergy of technology, theory, and experiment. New Perspective from Richard McIntosh @colorado.edu: rupress.org/jcb/article/...
#Cytoskeleton #Biophysics #Microtubules
#Cytoskeleton #Biophysics #Microtubules
October 22, 2025 at 8:15 PM
Understanding #microtubule dynamics: The synergy of technology, theory, and experiment. New Perspective from Richard McIntosh @colorado.edu: rupress.org/jcb/article/...
#Cytoskeleton #Biophysics #Microtubules
#Cytoskeleton #Biophysics #Microtubules
Reposted by Kalika Prasad
Nice!
How do your conclusions regarding paralog expression divergence compare to the ones from the recent Solanum paralog paper?
www.nature.com/articles/s41...
How do your conclusions regarding paralog expression divergence compare to the ones from the recent Solanum paralog paper?
www.nature.com/articles/s41...
Solanum pan-genetics reveals paralogues as contingencies in crop engineering - Nature
Gene duplication and subsequent paralogue diversification are major obstacles to genotype-to-phenotype predictability.
www.nature.com
October 18, 2025 at 9:03 AM
Nice!
How do your conclusions regarding paralog expression divergence compare to the ones from the recent Solanum paralog paper?
www.nature.com/articles/s41...
How do your conclusions regarding paralog expression divergence compare to the ones from the recent Solanum paralog paper?
www.nature.com/articles/s41...
Reposted by Kalika Prasad
Latest from ours: www.cell.com/cell-reports...
This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵
This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵
October 5, 2025 at 10:35 AM
Latest from ours: www.cell.com/cell-reports...
This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵
This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵
Reposted by Kalika Prasad
Webinar on Quantitative Approaches to Cellular Aspects of Plant Ion Homeostasis on Thursday October 16th: 3-4pm BST
www.cambridge.org/core/journal...
www.cambridge.org/core/journal...
October 1, 2025 at 10:34 AM
Webinar on Quantitative Approaches to Cellular Aspects of Plant Ion Homeostasis on Thursday October 16th: 3-4pm BST
www.cambridge.org/core/journal...
www.cambridge.org/core/journal...
Reposted by Kalika Prasad
It's official! We are moving to Stowers!
Very exciting opportunity to expand our studies of insect-plant interactions. We have many opportunities available in biochemistry, development, behavior, genetics, evolution, genomics, AI, and even pest control. Interested in any of these things? Reach out!
Very exciting opportunity to expand our studies of insect-plant interactions. We have many opportunities available in biochemistry, development, behavior, genetics, evolution, genomics, AI, and even pest control. Interested in any of these things? Reach out!
NEWS🎉 We’re excited to announce @hhmijanelia.bsky.social Investigator David Stern will join the Institute from Janelia Research Campus. His lab studies how aphids transform plants at the genetic level, uncovering secrets of #evolution & new strategies for pest control. @hhmi.org bit.ly/4np96Fb
Stowers Institute recruits renowned developmental and evolutionary…
David Stern, Ph.D., brings groundbreaking research on insect–plant interactions for next-generation pest control to the Institute.
bit.ly
September 30, 2025 at 8:15 PM
It's official! We are moving to Stowers!
Very exciting opportunity to expand our studies of insect-plant interactions. We have many opportunities available in biochemistry, development, behavior, genetics, evolution, genomics, AI, and even pest control. Interested in any of these things? Reach out!
Very exciting opportunity to expand our studies of insect-plant interactions. We have many opportunities available in biochemistry, development, behavior, genetics, evolution, genomics, AI, and even pest control. Interested in any of these things? Reach out!
Reposted by Kalika Prasad
How do plants regenerate after wounding? Our new work shows that HSFA1 transcription factors are among the earliest wound-activated regulators of cellular reprogramming in plants!
Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis https://www.biorxiv.org/content/10.1101/2025.09.29.679115v1
October 1, 2025 at 6:26 AM
How do plants regenerate after wounding? Our new work shows that HSFA1 transcription factors are among the earliest wound-activated regulators of cellular reprogramming in plants!
Reposted by Kalika Prasad
I really like the series of profiles @newphyt.bsky.social is currently publishing.
The new one is on @stanfordstomata.bsky.social:
nph.onlinelibrary.wiley.com/doi/10.1111/...
#PlantScience #PlantLuminaries
The new one is on @stanfordstomata.bsky.social:
nph.onlinelibrary.wiley.com/doi/10.1111/...
#PlantScience #PlantLuminaries
September 29, 2025 at 8:27 AM
I really like the series of profiles @newphyt.bsky.social is currently publishing.
The new one is on @stanfordstomata.bsky.social:
nph.onlinelibrary.wiley.com/doi/10.1111/...
#PlantScience #PlantLuminaries
The new one is on @stanfordstomata.bsky.social:
nph.onlinelibrary.wiley.com/doi/10.1111/...
#PlantScience #PlantLuminaries
Humbled to be a part of Indian Science Academies, @ IAScBng, @nasi_academy, and Now @insa_academy
Such moments remind me how fortunate I am to work with talented lab members (past and present), collaborators, colleagues and mentors all along. Thank you for this opportunity 🙏
Such moments remind me how fortunate I am to work with talented lab members (past and present), collaborators, colleagues and mentors all along. Thank you for this opportunity 🙏
September 29, 2025 at 8:39 AM
Humbled to be a part of Indian Science Academies, @ IAScBng, @nasi_academy, and Now @insa_academy
Such moments remind me how fortunate I am to work with talented lab members (past and present), collaborators, colleagues and mentors all along. Thank you for this opportunity 🙏
Such moments remind me how fortunate I am to work with talented lab members (past and present), collaborators, colleagues and mentors all along. Thank you for this opportunity 🙏
Reposted by Kalika Prasad
I'm looking forward to chairing this webinar. Congrats to the Dissemination of Arabidopsis Knowledge awardees!
RSVP to join the Dec 16th webinar and hear from the 2025 Arabidopsis Community Dissemination of Arabidopsis Knowledge Awardees! bit.ly/naascawards
@bar-plantbio.bsky.social
@natanellae.bsky.social
@bar-plantbio.bsky.social
@natanellae.bsky.social
September 23, 2025 at 1:44 AM
I'm looking forward to chairing this webinar. Congrats to the Dissemination of Arabidopsis Knowledge awardees!
Reposted by Kalika Prasad
Congrats to the Arabidopsis Lifetime Achievement Awardees!
Please share & RSVP to join the November 25th webinar!
Hear from the 2025 Philip N. Benfey Arabidopsis Community Lifetime Achievement Awardees! bit.ly/naascawards
@plantevolution.bsky.social
Hear from the 2025 Philip N. Benfey Arabidopsis Community Lifetime Achievement Awardees! bit.ly/naascawards
@plantevolution.bsky.social
September 23, 2025 at 1:45 AM
Congrats to the Arabidopsis Lifetime Achievement Awardees!
Reposted by Kalika Prasad
Development does not happen in isolation! Material properties, geometry, stiffness, fluid flows...can all steer how development unfolds. If you’re exploring these kinds of questions, we’d love to see your work @dev-journal.bsky.social
More info below ⬇️
More info below ⬇️
📢Call for papers. Submit your latest research to our upcoming special issue – The Extracellular Environment in Development, Regeneration and Stem Cells
Guest Editors: Alex Hughes and Rashmi Priya
📅 Deadline: 1 March 2026
journals.biologists.com/dev/pages/ex...
#DevBio
Guest Editors: Alex Hughes and Rashmi Priya
📅 Deadline: 1 March 2026
journals.biologists.com/dev/pages/ex...
#DevBio
September 19, 2025 at 9:48 AM
Development does not happen in isolation! Material properties, geometry, stiffness, fluid flows...can all steer how development unfolds. If you’re exploring these kinds of questions, we’d love to see your work @dev-journal.bsky.social
More info below ⬇️
More info below ⬇️
Reposted by Kalika Prasad
If you are leading a team, you have a responsibility to be a “pragmatic optimist”. Otherwise, you risk being disloyal to the amazing young people you work with. #FridayThoughts
a cartoon of two girls with the words " it 's all about which way you look "
ALT: a cartoon of two girls with the words " it 's all about which way you look "
media.tenor.com
September 19, 2025 at 6:09 AM
If you are leading a team, you have a responsibility to be a “pragmatic optimist”. Otherwise, you risk being disloyal to the amazing young people you work with. #FridayThoughts
Reposted by Kalika Prasad
Career Feature @nature.com : ‘Lipstick on a pig’: how to fight back against a peer-review bully.
www.nature.com/articles/d41...
www.nature.com/articles/d41...
‘Lipstick on a pig’: how to fight back against a peer-review bully
Scientific societies, journals, editors and researchers are pushing back against mean-spirited peer reviews.
www.nature.com
September 16, 2025 at 8:41 AM
Career Feature @nature.com : ‘Lipstick on a pig’: how to fight back against a peer-review bully.
www.nature.com/articles/d41...
www.nature.com/articles/d41...
Reposted by Kalika Prasad
Today's the last day to apply for the Plant Cell Assistant Features Editor (AFE) program, usually postdocs or senior PhD students! It's a fantastic opportunity, a great learning experience & a lot of fun too.
If you aren't quite ready, in June 2026 Plant Physiology will open its own call for AFEs 👍
If you aren't quite ready, in June 2026 Plant Physiology will open its own call for AFEs 👍
📣The Plant Cell is recruiting Assistant Features Editors. The application period opens now and runs through September 15, 2025!🌱
👉Application information can be found at this link: blog.aspb.org/the-plant-ce...
#plantscience
👉Application information can be found at this link: blog.aspb.org/the-plant-ce...
#plantscience
September 15, 2025 at 12:13 PM
Today's the last day to apply for the Plant Cell Assistant Features Editor (AFE) program, usually postdocs or senior PhD students! It's a fantastic opportunity, a great learning experience & a lot of fun too.
If you aren't quite ready, in June 2026 Plant Physiology will open its own call for AFEs 👍
If you aren't quite ready, in June 2026 Plant Physiology will open its own call for AFEs 👍
Reposted by Kalika Prasad
Join us at the Plant Science Research Institute of the University of Montreal to develop your research group in Plant Molecular Genetics:
www.nature.com/naturecareer...
www.nature.com/naturecareer...
Assistant Professor in Plant Molecular Genetics - Montréal, Quebec (CA) job with Institut de recherche en biologie végétale (IRBV) | 12844852
A full-time tenure-track assistant professor position at the IRBV, Université de Montréal.
www.nature.com
September 16, 2025 at 7:31 PM
Join us at the Plant Science Research Institute of the University of Montreal to develop your research group in Plant Molecular Genetics:
www.nature.com/naturecareer...
www.nature.com/naturecareer...
Reposted by Kalika Prasad
I'm making a collage of Arabidopsis habitats for a seminar. If you have photos to share, such as these iconic ones from @mexpositoalonso.bsky.social & @coevolution.bsky.social, please send to weigel@tue.mpg.de. Please let me also know how to attribute them. 🙏🙏🙏🙏
September 14, 2025 at 9:52 AM
I'm making a collage of Arabidopsis habitats for a seminar. If you have photos to share, such as these iconic ones from @mexpositoalonso.bsky.social & @coevolution.bsky.social, please send to weigel@tue.mpg.de. Please let me also know how to attribute them. 🙏🙏🙏🙏