Gerard Lab
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gerardlab.bsky.social
Gerard Lab
@gerardlab.bsky.social
We love T cells, anti-tumour immunity and imaging!
Lab at the Kennedy Institute of Rheumatology, University of Oxford.
Pinned
Tumours escape the immune system by mutating to decrease their immunogenicity. In this study, now in
@natcomms.bsky.social, we described that immune cells can adapt to IFNg-driven escape, enhancing their fitness and thereby counteracting tumour escape www.nature.com/articles/s41...
Remodelling of the immune landscape by IFNγ counteracts IFNγ-dependent tumour escape in mouse tumour models - Nature Communications
Losing sensitivity to IFNγ may contribute to tumor immune escape, but containment of IFNγ-insensitive tumors is also reported. Here the authors show, by analyzing immune landscape differences between ...
www.nature.com
Reposted by Gerard Lab
For our #flowcytometry peeps, would you like to have a single fix/perm protocol that is optimised for everything? One that preserves fluorophores while allowing simultaneous TF and cytokine staining? How about 100-fold cheaper?

You got it:
currentprotocols.onlinelibrary.wiley.com/doi/10.1002/...
currentprotocols.onlinelibrary.wiley.com
September 19, 2025 at 2:39 PM
Reposted by Gerard Lab
Lung structural cells are altered by influenza virus leading to rapid immune protection following re-challenge @natcomms.nature.com www.nature.com/articles/s41...
August 2, 2025 at 3:30 AM
Reposted by Gerard Lab
📣First paper from the lab is out in @science.org‬! 📣https://www.science.org/doi/10.1126/sciadv.adu3461 It’s well known that HLA shapes the TCR repertoire — but how does this change under immune checkpoint blockade (ICB)?
Defining the genetic determinants of CD8+ T cell receptor repertoire in the context of immune checkpoint blockade
Immune checkpoint blockade influences the genetically determined relationship between TCR repertoire and HLA alleles in cancer.
www.science.org
July 28, 2025 at 10:09 AM
Reposted by Gerard Lab
Congratulations to Dr Fränze Progatzky, who has been awarded a Lister Institute Research Prize to support her research into glial cell biology!

www.kennedy.ox.ac.uk/news/dr-fran...

@thelisterinstitute.bsky.social @franzeprogatzky.bsky.social
Dr Fränze Progatzky wins Lister Prize
Dr Fränze Progatzky, Principal Investigator in Tissue Biology and Wellcome Career Development Fellow, has been awarded a Lister Institute Research Prize to support her outstanding science.
www.kennedy.ox.ac.uk
July 21, 2025 at 3:28 PM
Reposted by Gerard Lab
I'm excited about a new @biorxivpreprint.bsky.social story that just went live! This one takes a #computational #immunology approach to understanding #tissueresident lymphocytes. The story highlights the extra value mathematical modelling can bring to biology. 🧵1/10

www.biorxiv.org/content/10.1...
Probabilistic migration events drive transient tissue residency of lymphocytes during homeostasis
Tissue-resident lymphocytes form a phenotypically and functionally distinct analog to the corresponding circulatory lymphocyte populations. Residential CD8 T cells, in particular, are identified as having prolonged residence in the tissues and key functions in recall responses at tissue-environmental interfaces, although the dwell time in individual tissues has yet to be resolved. Residential CD4 T cells, regulatory T cells, B cells, and NK cells have been demonstrated to share phenotypic properties with residential CD8 T cells, but the migratory kinetics are even more poorly defined. Here we used probabilistic modelling on a large parabiosis dataset, covering multiple time-points and tissues, to calculate migration kinetics and dwell times of multiple lymphocyte subsets across a diverse set of tissues. Markov chain modelling identified distinct cell type-specific and tissue-specific residency patterns. The liver and gut were prone to prolonged residency compared to other tissue types, and a hierarchy of residency was observed with CD8 T cells and NK cells demonstrating longer residency than CD4 conventional T cells and regulatory T cells, which in turn resided in tissues longer than B cells. With few exceptions, however, average residency was at least an order of magnitude shorter than the life-span of the mouse, indicating a more dynamic form of steady-state tissue residency than usually assumed. Together these data provide a comprehensive model of a pan-tissue shared program in lymphocyte tissue residence, as well as identifying cell type- and organ-specific modification of the migratory kinetics. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, 222442/Z/21/Z European Research Council, TissueTreg
www.biorxiv.org
July 9, 2025 at 8:17 AM
Reposted by Gerard Lab
Our new review article led by Jordan Kramer:

Platforms for studying cell–cell recognition by immune cells

onlinelibrary.wiley.com/doi/10.1111/...
May 31, 2025 at 8:54 AM
Reposted by Gerard Lab
Dear uLIPSTIC users,

We have been getting reports that, under some more inflammatory settings like TB or chronic LCMV infection, uLIPSTIC-expressing lymphocytes adoptively transferred into cre-negative uLIPSTIC hosts may be rejected at later timepoints (>1 wk).
May 29, 2025 at 7:13 PM
Reposted by Gerard Lab
There are still a few places left for this major @oxfordcancer.bsky.social fixture. We are keeping registration open until places are filled so sign up now!
Registration for the Oxford Cancer Immuno-Oncology Network (OCION) Annual Symposium 2025 closes midday 23rd May! Abstract deadline: 15th May.

Big thanks to this year's sponsors:
@10xgenomics.bsky.social
@Immunocore
@nanoporetech.com
@imtadvances.bsky.social
Oxford Cancer Immuno-Oncology Network (OCION) Annual Symposium 2025
The OCION Annual Symposium aims to help catalyse immuno-oncology research across Oxford
www.eventbrite.co.uk
May 20, 2025 at 3:58 PM
Reposted by Gerard Lab
Incoming - new preprint alert from the Parkes lab led by @brunobeernaert.bsky.social Full bluetutorial follows! 1/ 11 www.biorxiv.org/content/10.1...
May 12, 2025 at 12:08 PM
Reposted by Gerard Lab
Happy #DayofImmunology! Congrats @ramadhenni.bsky.social & Alexandra Carey Hoppé it's out (finally!) @cp-cell.bsky.social! Incredibly grateful to co-leads @mlmunier.bsky.social, Vanessa Venturi & Tony Kelleher & all brilliant folks @garvaninstitute.bsky.social & Kirby Inst. for fantastic collab! 🧵
Macrophages direct location-dependent recall of B cell memory to vaccination
Vaccines generate long-lived plasma cells and memory B cells (Bmems) that may re-enter secondary germinal centers (GCs) to further mutate their B cell…
www.sciencedirect.com
April 29, 2025 at 1:20 PM
Reposted by Gerard Lab
www.nature.com/articles/s41...
Proud of my group and collaborators for this work published today in Nature Medicine. We find Cytomegalovirus, which has a profound impact on T cell immunity, is associated with distinct clinical outcomes in patients receiving checkpoint immunotherapy for melanoma.
CMV serostatus is associated with improved survival and delayed toxicity onset following anti-PD-1 checkpoint blockade - Nature Medicine
Analysis of multiple cohorts of patients with melanoma demonstrates a positive association between cytomegalovirus serostatus and overall survival in patients treated with monotherapy but not combinat...
www.nature.com
April 23, 2025 at 11:11 AM
Reposted by Gerard Lab
Last chance to apply for our 2025 DPhil in Cancer Science Programme!

🥼 We are open to applications from Medical Undergraduates

📚 We also have 3 GSK-Oxford DPhil studentships available.

📢 Deadline: Noon 25th April.

Apply below ⬇️ @medsci.ox.ac.uk

www.cancer.ox.ac.uk/study#how-to...
DPhil in Cancer Science
We use cookies to ensure that we give you the best experience on our website. If you click 'Accept all cookies' we'll assume that you are happy to receive all cookies and you won't see this message…
www.cancer.ox.ac.uk
April 23, 2025 at 9:19 AM
Reposted by Gerard Lab
Now published @cp-iscience.bsky.social
Work lead by David Lecky & Lozan Sheriff in collaboration with @therad-lab.bsky.social and @cameron-wraith.bsky.social showing how IFNg augments T Cell receptor signal strength to enhance type 1 Regulatory T (Tr1) cell development

www.cell.com/iscience/ful...
April 11, 2025 at 7:21 AM
Reposted by Gerard Lab
🚨 Paper Alert 🚨
Absolutely delighted to share our last paper on "spatial mechano-transcriptomics" @naturemethods👇!!
www.nature.com/articles/s41...
A computational pipeline for spatial mechano-transcriptomics - Nature Methods
The authors present a computational framework that leverages mechanical force inference and spatial transcriptomics to enable analyses of the interplay between the transcriptomic and mechanical state.
www.nature.com
March 17, 2025 at 12:53 PM
Reposted by Gerard Lab
The loss of TBK1, or both TBK1 and the related kinase IKKε, results in uncontrolled cell death–driven inflammation. We show that TBK1/IKKε prevent premature cell death by limiting the activity of multiple death pathways in myeloid cells. www.science.org/doi/10.1126/...
TBK1 and IKKε prevent premature cell death by limiting the activity of both RIPK1 and NLRP3 death pathways
TBK1 and IKKe prevent premature cell death by limiting the activity of multiple death pathways in myeloid cells.
www.science.org
March 7, 2025 at 8:49 PM
Reposted by Gerard Lab
🦠🔬 We are very excited to organize an EMBO workshop on Immunity in Barrier Tissues with Carolyn King! @immunologyking.bsky.social

📍 Where: Basel, Switzerland
📅 When: 26th–29th August 2025
📝 Registration deadline: 30th May 2025

Check out the program and details 🔗

#EMBOBarrierTissues @embo.org
Adaptive immunity in barrier tissues
Immune responses lie at the heart of almost every aspect of human health, including host responses to infection, autoimmunity, cancer, metabolism and aging. While adaptive immune responses by B and T…
meetings.embo.org
February 25, 2025 at 8:33 AM
Reposted by Gerard Lab
🚨 We have TWO exciting open positions in our lab! 🚨

We are looking for talented, highly motivated, and collaborative individuals to join our dynamic team as:

🔬 Research Assistant
www.kennedy.ox.ac.uk/jobs/researc...

💻 Bioinformatics Postdoc
www.kennedy.ox.ac.uk/jobs/bioinfo...

📢 Please share!
Research Assistant (177885)
We are looking for a Research Assistant with a background in immunology/neurobiology to join the interdisciplinary laboratory of Dr Fränze Progatzky at the Kennedy Institute.
www.kennedy.ox.ac.uk
February 24, 2025 at 11:35 AM
Reposted by Gerard Lab
Intravital imaging of pulmonary lymphatics in inflammation and metastatic cancer @jem.org @simoncleary.bsky.social
doi.org/10.1084/jem....
February 20, 2025 at 2:37 AM
Reposted by Gerard Lab
Meningeal regulatory T cells restrain local interferon-γ–producing lymphocytes, thereby safeguarding parenchymal brain homeostasis
@sciimmunology.bsky.social @mmr2.bsky.social
www.science.org/doi/10.1126/...
January 28, 2025 at 6:06 PM
Reposted by Gerard Lab
It turns out the immune system is playing 4D chess while we thought it was just playing checkers. Using #spatialtranscriptomics from @10xgenomics.bsky.social and @vizgen.bsky.social we were able to peek into the secret lives of tissue resident T cells in the gut as they form after infection 1/n
Tissue-resident memory CD8 T cell diversity is spatiotemporally imprinted - Nature
Profiling of the location and transcriptome of tissue-resident memory CD8 T cell formation at single-transcript resolution finds regionalized signalling as the basis of immune diversity in t...
www.nature.com
January 22, 2025 at 5:37 PM
The OT-I TCR is often criticised as being very high-affinity and displaying unusual behaviour compared to other TCR transgenics. New work from @tcell.bsky.social shows this might not be the case. Will I still use OT-I and all the wonderful tools associated with it? Yes I will!
Our new work!

The 3D affinities of the OT-I TCR to foreign and self-antigens predict their 2D affinities and reveal imperfect antigen discrimination

www.biorxiv.org/content/10.1...
January 16, 2025 at 10:34 AM
Reposted by Gerard Lab
FYI for anyone interested in MuSpAn - we've updated the preprint this week with the full SI. Now featuring more examples of how various different spatial metrics can be strung together in order to make spatial pipelines focussed on specific biological questions!

www.biorxiv.org/content/10.1...
MuSpAn: A Toolbox for Multiscale Spatial Analysis
The generation of spatial data in biology has been transformed by multiplex imaging and spatial-omics technologies, such as single cell spatial transcriptomics. These approaches permit a detailed mapp...
www.biorxiv.org
January 9, 2025 at 5:59 PM