Evangelia Petsalaki
@epetsalaki.bsky.social
Group Leader at EMBL-EBI. Our group uses interdisciplinary approaches including network analysis, omics integration and mathematical modelling to study the context specific regulation of human cell signalling.
Reposted by Evangelia Petsalaki
The IGBMC is recruiting a new Computational Biology Group Leader through the ENACT AI Chair for Scientific Discoveries, covering cancer, developmental, and structural biology. Join one of Europe’s leading life science centers!
cluster-ia-enact.ai/appels-a-pro...
Deadline: Jan 7, 2026
cluster-ia-enact.ai/appels-a-pro...
Deadline: Jan 7, 2026
November 13, 2025 at 9:33 AM
The IGBMC is recruiting a new Computational Biology Group Leader through the ENACT AI Chair for Scientific Discoveries, covering cancer, developmental, and structural biology. Join one of Europe’s leading life science centers!
cluster-ia-enact.ai/appels-a-pro...
Deadline: Jan 7, 2026
cluster-ia-enact.ai/appels-a-pro...
Deadline: Jan 7, 2026
Reposted by Evangelia Petsalaki
We are looking to fill a position for computational PhD student, focusing on the development and application of statistical genetics methods to large collections of bacterial pathogens. Have a look at the link for more info.
RTs appreciated :)
www.microbial-pangenomes-lab.org/2025/11/06/C...
RTs appreciated :)
www.microbial-pangenomes-lab.org/2025/11/06/C...
PhD position in bacterial genomics and machine learning available
This is the official web page for the Microbial Pangenomes Lab at Twincore.
www.microbial-pangenomes-lab.org
November 13, 2025 at 10:46 AM
We are looking to fill a position for computational PhD student, focusing on the development and application of statistical genetics methods to large collections of bacterial pathogens. Have a look at the link for more info.
RTs appreciated :)
www.microbial-pangenomes-lab.org/2025/11/06/C...
RTs appreciated :)
www.microbial-pangenomes-lab.org/2025/11/06/C...
Reposted by Evangelia Petsalaki
That will be fun to explore!
Thrilled to share that the final piece of my PhD work is now on bioRxiv! biorxiv.org/content/10.1... With support from @nvidia and the @NSF, we used AlphaFold to screen 1.6M+ protein pairs, revealing thousands of potential novel PPIs. All data can be viewed at predictomes.org/hp
Proteome-wide in silico screening for human protein-protein interactions
Protein-protein interactions (PPIs) drive virtually all biological processes, yet most PPIs have not been identified and even more remain structurally unresolved. We developed a two-step computational...
biorxiv.org
November 13, 2025 at 12:01 PM
That will be fun to explore!
Reposted by Evangelia Petsalaki
Come and join us here in Cambridge! Applications open for a new faculty position, for a researcher in computational and/or theoretical biology, based jointly in Genetics and Mathematics. Happy to answer questions about research, teaching and working here.
www.cam.ac.uk/jobs/faculty...
www.cam.ac.uk/jobs/faculty...
Faculty Position in Computational Biology
Applications are invited for an Assistant/ Associate Professorship in Computational Biology to commence on 1 April 2026 or shortly thereafter. This is a joint post between the Department of Applied
www.cam.ac.uk
November 11, 2025 at 9:05 PM
Come and join us here in Cambridge! Applications open for a new faculty position, for a researcher in computational and/or theoretical biology, based jointly in Genetics and Mathematics. Happy to answer questions about research, teaching and working here.
www.cam.ac.uk/jobs/faculty...
www.cam.ac.uk/jobs/faculty...
Reposted by Evangelia Petsalaki
We have written two reviews providing a practical guide and fundamentals of cell migration:
(1) How to select an optimal cell migration assay,
(2) How to analyze cell migration data.
We also added a perspective on AI methods of analysis.
Coming out soon in Nature Methods.
(1) How to select an optimal cell migration assay,
(2) How to analyze cell migration data.
We also added a perspective on AI methods of analysis.
Coming out soon in Nature Methods.
November 8, 2025 at 6:17 PM
We have written two reviews providing a practical guide and fundamentals of cell migration:
(1) How to select an optimal cell migration assay,
(2) How to analyze cell migration data.
We also added a perspective on AI methods of analysis.
Coming out soon in Nature Methods.
(1) How to select an optimal cell migration assay,
(2) How to analyze cell migration data.
We also added a perspective on AI methods of analysis.
Coming out soon in Nature Methods.
Reposted by Evangelia Petsalaki
Which human brain circuits are implicated in neurodevelopmental conditions? We bridged human genetics, spatial transcriptomics and neurodevelopment to discover the convergence of autism-associated genes in the developing human thalamus! www.biorxiv.org/content/10.1...
November 11, 2025 at 10:55 AM
Which human brain circuits are implicated in neurodevelopmental conditions? We bridged human genetics, spatial transcriptomics and neurodevelopment to discover the convergence of autism-associated genes in the developing human thalamus! www.biorxiv.org/content/10.1...
Reposted by Evangelia Petsalaki
🌍Open call: Junior Group Leader positions!
Join a world-class biomedical research institute at the heart of the Vienna BioCenter, where curiosity drives discovery.
Lead your own lab, pursue bold ideas, and shape the future of science at the IMP: www.imp.ac.at/career/open-...
Join a world-class biomedical research institute at the heart of the Vienna BioCenter, where curiosity drives discovery.
Lead your own lab, pursue bold ideas, and shape the future of science at the IMP: www.imp.ac.at/career/open-...
November 10, 2025 at 1:26 PM
🌍Open call: Junior Group Leader positions!
Join a world-class biomedical research institute at the heart of the Vienna BioCenter, where curiosity drives discovery.
Lead your own lab, pursue bold ideas, and shape the future of science at the IMP: www.imp.ac.at/career/open-...
Join a world-class biomedical research institute at the heart of the Vienna BioCenter, where curiosity drives discovery.
Lead your own lab, pursue bold ideas, and shape the future of science at the IMP: www.imp.ac.at/career/open-...
Reposted by Evangelia Petsalaki
8 high level positions at NIH posted including 6 institute director positions (NIMH, NIGMS, NICHD, NIDCR, NHGRI, NLM).
Only open for 2 weeks (applications due November 21).
Application materials include a) CV b) vision statement c) a photocopy of doctoral degree.
hr.nih.gov/careers/open...
Only open for 2 weeks (applications due November 21).
Application materials include a) CV b) vision statement c) a photocopy of doctoral degree.
hr.nih.gov/careers/open...
hr.nih.gov
November 7, 2025 at 10:20 PM
8 high level positions at NIH posted including 6 institute director positions (NIMH, NIGMS, NICHD, NIDCR, NHGRI, NLM).
Only open for 2 weeks (applications due November 21).
Application materials include a) CV b) vision statement c) a photocopy of doctoral degree.
hr.nih.gov/careers/open...
Only open for 2 weeks (applications due November 21).
Application materials include a) CV b) vision statement c) a photocopy of doctoral degree.
hr.nih.gov/careers/open...
Reposted by Evangelia Petsalaki
Bonjour! Masters students in France 🇫🇷, we’ve got an internship for you, in collaboration with the French Embassy in London.
Aimed at students of computer science, statistics or bioinformatics.
Deadline: 7 December 2025
Find out more and apply:
www.ebi.ac.uk/about/jobs/i...
Aimed at students of computer science, statistics or bioinformatics.
Deadline: 7 December 2025
Find out more and apply:
www.ebi.ac.uk/about/jobs/i...
November 3, 2025 at 11:00 AM
Bonjour! Masters students in France 🇫🇷, we’ve got an internship for you, in collaboration with the French Embassy in London.
Aimed at students of computer science, statistics or bioinformatics.
Deadline: 7 December 2025
Find out more and apply:
www.ebi.ac.uk/about/jobs/i...
Aimed at students of computer science, statistics or bioinformatics.
Deadline: 7 December 2025
Find out more and apply:
www.ebi.ac.uk/about/jobs/i...
Reposted by Evangelia Petsalaki
I am hiring! - looking for a Staff Scientist to co-run my research group with me. Staff Scientist is a senior professional scientist role at EMBL. Please forward to people you might know who could be interested! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Staff Scientist
About EMBL-EBI EMBL’s European Bioinformatics Institute is a data powerhouse, utilised on a global scale to advance scientific discovery through bioinformatics and solutions to some of the world’s mos...
embl.wd103.myworkdayjobs.com
October 10, 2025 at 7:30 AM
I am hiring! - looking for a Staff Scientist to co-run my research group with me. Staff Scientist is a senior professional scientist role at EMBL. Please forward to people you might know who could be interested! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Reposted by Evangelia Petsalaki
Skeetorial on our BRAF preprint!
tinyurl.com/asymmBRAF
The RAS->RAF->MEK->ERK cascade carries mutations in most human cancers. Interestingly, although we have three RAF paralogues (A, B and C), it is the BRAF that is predominantly mutated in cancer patients. (1/10)
tinyurl.com/asymmBRAF
The RAS->RAF->MEK->ERK cascade carries mutations in most human cancers. Interestingly, although we have three RAF paralogues (A, B and C), it is the BRAF that is predominantly mutated in cancer patients. (1/10)
Mechanism of MEK1 phosphorylation by the N-terminal acidic motif-mediated asymmetric BRAF dimer
The RAF/MEK/ERK signaling cascade regulates cell proliferation and differentiation and is frequently dysregulated in cancer. Approximately 90% of RAF-mutant cancers harbour mutations in B-type of Rapi...
tinyurl.com
October 14, 2025 at 8:17 AM
Skeetorial on our BRAF preprint!
tinyurl.com/asymmBRAF
The RAS->RAF->MEK->ERK cascade carries mutations in most human cancers. Interestingly, although we have three RAF paralogues (A, B and C), it is the BRAF that is predominantly mutated in cancer patients. (1/10)
tinyurl.com/asymmBRAF
The RAS->RAF->MEK->ERK cascade carries mutations in most human cancers. Interestingly, although we have three RAF paralogues (A, B and C), it is the BRAF that is predominantly mutated in cancer patients. (1/10)
Reposted by Evangelia Petsalaki
Happening now at GIMM Lisbon 🧠✨
Our "Science meets the Media" workshop is underway - featuring the experienced and inspiring contributions of our collaborators Oana Stroe (EMBL-EBI), Omar Jamshed (CRG), and Sara Sá (GIMM).
#BIOMICSproject #GIMM #ScienceCommunication #Bioinformatics #Workshop
Our "Science meets the Media" workshop is underway - featuring the experienced and inspiring contributions of our collaborators Oana Stroe (EMBL-EBI), Omar Jamshed (CRG), and Sara Sá (GIMM).
#BIOMICSproject #GIMM #ScienceCommunication #Bioinformatics #Workshop
October 14, 2025 at 11:46 AM
Happening now at GIMM Lisbon 🧠✨
Our "Science meets the Media" workshop is underway - featuring the experienced and inspiring contributions of our collaborators Oana Stroe (EMBL-EBI), Omar Jamshed (CRG), and Sara Sá (GIMM).
#BIOMICSproject #GIMM #ScienceCommunication #Bioinformatics #Workshop
Our "Science meets the Media" workshop is underway - featuring the experienced and inspiring contributions of our collaborators Oana Stroe (EMBL-EBI), Omar Jamshed (CRG), and Sara Sá (GIMM).
#BIOMICSproject #GIMM #ScienceCommunication #Bioinformatics #Workshop
Reposted by Evangelia Petsalaki
By Niarakis et al., including:
@athinacp.bsky.social
@eirini-tsirvouli.bsky.social
@hasanbalci.bsky.social
@ozanozisik.bsky.social
@arnaumontagud.bsky.social
@subbannayya.bsky.social
@mkutmon.bsky.social
Learn about their 5-year plan: www.immunoinformaticsjournal.com/article/S266...
@athinacp.bsky.social
@eirini-tsirvouli.bsky.social
@hasanbalci.bsky.social
@ozanozisik.bsky.social
@arnaumontagud.bsky.social
@subbannayya.bsky.social
@mkutmon.bsky.social
Learn about their 5-year plan: www.immunoinformaticsjournal.com/article/S266...
Building Immune Digital Twins: An International and Transdisciplinary Community Effort
Digital twins, initially developed for industrial applications, are set to make significant
advancements in medicine and healthcare. They have demonstrated promising potential
for drug development and...
www.immunoinformaticsjournal.com
October 9, 2025 at 2:05 AM
By Niarakis et al., including:
@athinacp.bsky.social
@eirini-tsirvouli.bsky.social
@hasanbalci.bsky.social
@ozanozisik.bsky.social
@arnaumontagud.bsky.social
@subbannayya.bsky.social
@mkutmon.bsky.social
Learn about their 5-year plan: www.immunoinformaticsjournal.com/article/S266...
@athinacp.bsky.social
@eirini-tsirvouli.bsky.social
@hasanbalci.bsky.social
@ozanozisik.bsky.social
@arnaumontagud.bsky.social
@subbannayya.bsky.social
@mkutmon.bsky.social
Learn about their 5-year plan: www.immunoinformaticsjournal.com/article/S266...
Reposted by Evangelia Petsalaki
The @crick.ac.uk is recruiting Early Career Group Leaders
- Lab set-up, research costs, salaries for up to 5 researchers
- Support for up to 12 years
- Access to our core facilities
- Competitive salary
- Fantastic colleagues
- All areas of biology
Deadline 27 Nov
www.crick.ac.uk/careers-stud...
- Lab set-up, research costs, salaries for up to 5 researchers
- Support for up to 12 years
- Access to our core facilities
- Competitive salary
- Fantastic colleagues
- All areas of biology
Deadline 27 Nov
www.crick.ac.uk/careers-stud...
Early career group leaders
We appoint researchers from across biology and biomedicine to set up their first groups at the Crick.
www.crick.ac.uk
October 10, 2025 at 8:20 AM
The @crick.ac.uk is recruiting Early Career Group Leaders
- Lab set-up, research costs, salaries for up to 5 researchers
- Support for up to 12 years
- Access to our core facilities
- Competitive salary
- Fantastic colleagues
- All areas of biology
Deadline 27 Nov
www.crick.ac.uk/careers-stud...
- Lab set-up, research costs, salaries for up to 5 researchers
- Support for up to 12 years
- Access to our core facilities
- Competitive salary
- Fantastic colleagues
- All areas of biology
Deadline 27 Nov
www.crick.ac.uk/careers-stud...
Reposted by Evangelia Petsalaki
new preprint: Ubiquitin is a protein modification linked with degradation but known to regulate other functions. Over 100k ubiquitination sites have been discovered and here we (@julianvangerwen.bsky.social + others) try to prioritize those most critical to the cell www.biorxiv.org/content/10.1...
The functional landscape of the human ubiquitinome
Protein ubiquitination regulates cell biology through diverse avenues, from quality control-linked protein degradation to signaling functions such as modulating protein-protein interactions and enzyme...
www.biorxiv.org
October 9, 2025 at 7:07 AM
new preprint: Ubiquitin is a protein modification linked with degradation but known to regulate other functions. Over 100k ubiquitination sites have been discovered and here we (@julianvangerwen.bsky.social + others) try to prioritize those most critical to the cell www.biorxiv.org/content/10.1...
Reposted by Evangelia Petsalaki
Join us in our plenary #seminar tomorrow, with Maria Tsoumakdou, MD PhD, from BSRC Alexander Fleming and National & Kapodistrian University of Athens University of Athens.
Host: Dr. @batllelab.bsky.social
Register here ➡️ https://shorturl.at/HNwEM
#CancerResearch #CancerImmunology
🧪
Host: Dr. @batllelab.bsky.social
Register here ➡️ https://shorturl.at/HNwEM
#CancerResearch #CancerImmunology
🧪
October 9, 2025 at 10:30 AM
Join us in our plenary #seminar tomorrow, with Maria Tsoumakdou, MD PhD, from BSRC Alexander Fleming and National & Kapodistrian University of Athens University of Athens.
Host: Dr. @batllelab.bsky.social
Register here ➡️ https://shorturl.at/HNwEM
#CancerResearch #CancerImmunology
🧪
Host: Dr. @batllelab.bsky.social
Register here ➡️ https://shorturl.at/HNwEM
#CancerResearch #CancerImmunology
🧪
Reposted by Evangelia Petsalaki
🥁 Check out our new preprint on OmniPath, the prior knowledge resource for #SystemsBiology, and its brand-new OmniPath Explorer web app! 🥳
📖 Preprint: www.biorxiv.org/content/10.1...
🔍 Explorer: explore.omnipathdb.org
OmniPath integrates 160+ resources for multi-omics analysis & modeling.
🧶⬇️
📖 Preprint: www.biorxiv.org/content/10.1...
🔍 Explorer: explore.omnipathdb.org
OmniPath integrates 160+ resources for multi-omics analysis & modeling.
🧶⬇️
September 17, 2025 at 1:10 PM
🥁 Check out our new preprint on OmniPath, the prior knowledge resource for #SystemsBiology, and its brand-new OmniPath Explorer web app! 🥳
📖 Preprint: www.biorxiv.org/content/10.1...
🔍 Explorer: explore.omnipathdb.org
OmniPath integrates 160+ resources for multi-omics analysis & modeling.
🧶⬇️
📖 Preprint: www.biorxiv.org/content/10.1...
🔍 Explorer: explore.omnipathdb.org
OmniPath integrates 160+ resources for multi-omics analysis & modeling.
🧶⬇️
Reposted by Evangelia Petsalaki
Our group has a PhD position open in this Doctoral network. Our topic is around combining proteomics AI and protein structures. Look through the website below to look at all of the projects/groups and apply.
🌟Ready to apply?
16 fully funded PhD positions are open in ProtAIomics Doctoral Network!
Join 16 labs across Europe to advance AI-powered proteomics and drive discoveries in health & biotechnology.
👉 Apply here: www.protaiomics.eu
#Proteomics #ArtificialIntelligence #MSCA #PhDOpportunities
16 fully funded PhD positions are open in ProtAIomics Doctoral Network!
Join 16 labs across Europe to advance AI-powered proteomics and drive discoveries in health & biotechnology.
👉 Apply here: www.protaiomics.eu
#Proteomics #ArtificialIntelligence #MSCA #PhDOpportunities
October 8, 2025 at 9:45 AM
Our group has a PhD position open in this Doctoral network. Our topic is around combining proteomics AI and protein structures. Look through the website below to look at all of the projects/groups and apply.
Reposted by Evangelia Petsalaki
There is a position open in our lab, within this network. Our project deals with assessing identification and quantification errors for MS-based proteomics. www.protaiomics.eu/project/dc13...
Please check out all the project descriptions at the site below:
Please check out all the project descriptions at the site below:
October 8, 2025 at 12:15 PM
There is a position open in our lab, within this network. Our project deals with assessing identification and quantification errors for MS-based proteomics. www.protaiomics.eu/project/dc13...
Please check out all the project descriptions at the site below:
Please check out all the project descriptions at the site below:
Reposted by Evangelia Petsalaki
Kickstarting our Bluesky🦋 account with great news!
Our REPAIRome study finally out today in
@science.org
www.science.org/doi/10.1126/...
Our REPAIRome study finally out today in
@science.org
www.science.org/doi/10.1126/...
A comprehensive genetic catalog of human double-strand break repair
The analysis of DNA sequence outcomes provides molecular insights into double-strand break (DSB) repair mechanisms. Using parallel in-pool profiling of Cas9-induced insertions and deletions (indels) w...
www.science.org
October 4, 2025 at 7:27 AM
Kickstarting our Bluesky🦋 account with great news!
Our REPAIRome study finally out today in
@science.org
www.science.org/doi/10.1126/...
Our REPAIRome study finally out today in
@science.org
www.science.org/doi/10.1126/...
Reposted by Evangelia Petsalaki
✨ Getting to know BIOMICS members ✨
Meet the people behind our #Twinning project one story at a time.
🎙️ Who’s our first guest?
Hint: a Group Leader at ETH Zurich exploring how molecular mechanisms shape human biology and disease.
Here ➡️ youtu.be/iqlB74ldyos
#HorizonEurope #BIOMICS #MeetTheTeam
Meet the people behind our #Twinning project one story at a time.
🎙️ Who’s our first guest?
Hint: a Group Leader at ETH Zurich exploring how molecular mechanisms shape human biology and disease.
Here ➡️ youtu.be/iqlB74ldyos
#HorizonEurope #BIOMICS #MeetTheTeam
Getting to know BIOMICS members: Pedro Beltrão
YouTube video by BIOMICS Twinning
youtu.be
October 6, 2025 at 1:33 PM
✨ Getting to know BIOMICS members ✨
Meet the people behind our #Twinning project one story at a time.
🎙️ Who’s our first guest?
Hint: a Group Leader at ETH Zurich exploring how molecular mechanisms shape human biology and disease.
Here ➡️ youtu.be/iqlB74ldyos
#HorizonEurope #BIOMICS #MeetTheTeam
Meet the people behind our #Twinning project one story at a time.
🎙️ Who’s our first guest?
Hint: a Group Leader at ETH Zurich exploring how molecular mechanisms shape human biology and disease.
Here ➡️ youtu.be/iqlB74ldyos
#HorizonEurope #BIOMICS #MeetTheTeam
Reposted by Evangelia Petsalaki
Reposted by Evangelia Petsalaki
Excited to present my talk "Data-Driven Mathematical Modelling to Improve Heart Organoid Design" in the Therapeutic Target Discovery module at #ICSB2025 in Dublin tomorrow at 3:20 pm! 🫀💻 @epetsalaki.bsky.social @ebi.embl.org
October 5, 2025 at 5:57 PM
Excited to present my talk "Data-Driven Mathematical Modelling to Improve Heart Organoid Design" in the Therapeutic Target Discovery module at #ICSB2025 in Dublin tomorrow at 3:20 pm! 🫀💻 @epetsalaki.bsky.social @ebi.embl.org
Reposted by Evangelia Petsalaki
Also don’t miss:
🧬👯 @epetsalaki.bsky.social’s talk “From Data to Digital Twins” (Wed, Digital Twin Models)
📊🧬 My poster P03.14 – Towards Data-Driven Executable Models (Wed)
🧩🤖 @alussana.bsky.social’s poster P18.13 – Data-Driven Inference of Functionally Coherent Gene Modules (Mon)
🧬👯 @epetsalaki.bsky.social’s talk “From Data to Digital Twins” (Wed, Digital Twin Models)
📊🧬 My poster P03.14 – Towards Data-Driven Executable Models (Wed)
🧩🤖 @alussana.bsky.social’s poster P18.13 – Data-Driven Inference of Functionally Coherent Gene Modules (Mon)
October 5, 2025 at 5:59 PM
Also don’t miss:
🧬👯 @epetsalaki.bsky.social’s talk “From Data to Digital Twins” (Wed, Digital Twin Models)
📊🧬 My poster P03.14 – Towards Data-Driven Executable Models (Wed)
🧩🤖 @alussana.bsky.social’s poster P18.13 – Data-Driven Inference of Functionally Coherent Gene Modules (Mon)
🧬👯 @epetsalaki.bsky.social’s talk “From Data to Digital Twins” (Wed, Digital Twin Models)
📊🧬 My poster P03.14 – Towards Data-Driven Executable Models (Wed)
🧩🤖 @alussana.bsky.social’s poster P18.13 – Data-Driven Inference of Functionally Coherent Gene Modules (Mon)
Reposted by Evangelia Petsalaki
Now published, our tool to run (almost) all biological models interactively in your web browser
Paper: academic.oup.com/bioinformati...
Website: biomodels.bacpop.org
Code: github.com/bacpop/SBMLt...
Paper: academic.oup.com/bioinformati...
Website: biomodels.bacpop.org
Code: github.com/bacpop/SBMLt...
September 29, 2025 at 9:49 AM
Now published, our tool to run (almost) all biological models interactively in your web browser
Paper: academic.oup.com/bioinformati...
Website: biomodels.bacpop.org
Code: github.com/bacpop/SBMLt...
Paper: academic.oup.com/bioinformati...
Website: biomodels.bacpop.org
Code: github.com/bacpop/SBMLt...