Daphne Superville
dasuperville.bsky.social
Daphne Superville
@dasuperville.bsky.social
UCSF PhD candidate @gogalab | MIT ‘17 🦫 | 🇦🇷 🇺🇸| #metastasis #tumormicroenvironment
Pinned
Running NMF on your scRNAseq data? Check out my updates to Lyndsay Murrow's DECIPHER-seq package, now compatible with Seurat v5 objects and rliger v2! github.com/dasuperville...
GitHub - dasuperville/DECIPHER-seq-v2: Data and code to reproduce results from DECIPHER-seq paper. Updated for use with Seurat v5 objects and rLiger v2.
Data and code to reproduce results from DECIPHER-seq paper. Updated for use with Seurat v5 objects and rLiger v2. - dasuperville/DECIPHER-seq-v2
github.com
Reposted by Daphne Superville
Intracellular bacteria in cancer cells promote immunosuppression in the metastatic niche
Intracellular bacteria in cancer cells promote immunosuppression in the metastatic niche
Nature Reviews Immunology, Published online: 12 February 2026; doi:10.1038/s41577-026-01279-1Intracellular bacteria in cancer cells promote the recruitment of neutrophils and their polarization towards an immunosuppressive phenotype via a cGAS-STING-dependent pathway.
dlvr.it
February 12, 2026 at 6:48 PM
Reposted by Daphne Superville
Matrix-bound nanovesicles elicit epigenetic changes in myeloid cells, modulating their response to future inflammatory events
www.science.org/doi/10.1126/...
February 12, 2026 at 3:29 AM
Reposted by Daphne Superville
Metabolic control of innate immune activation in TET2-mutant clonal hematopoiesis @cp-cellchembiol.bsky.social @danafarber.bsky.social
www.cell.com/cell-chemica...
February 11, 2026 at 9:41 PM
Reposted by Daphne Superville
IFN-γ-induced trained immunity enhances killing of priority pathogens in healthy and genetically vulnerable individuals @insight.jci.org @tcddublin.bsky.social
insight.jci.org/articles/vie...
February 11, 2026 at 10:08 PM
Reposted by Daphne Superville
Reposted by Daphne Superville
Chrysanthi Moschandrea and I have developed a new conceptual framework for understanding the role of metabolism in cancer, which we term metabolic permissiveness. We are eager to hear your thoughts on this topic.

genesdev.cshlp.org/content/earl...
Metabolic permissiveness: how tissue context shapes cancer
A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields
genesdev.cshlp.org
February 10, 2026 at 11:47 AM
Reposted by Daphne Superville
Targeting Myc activates a tissue-specific tumour resolution programme https://www.biorxiv.org/content/10.64898/2026.02.06.704498v1
February 10, 2026 at 1:47 AM
Reposted by Daphne Superville
Two doses of Recombinant zoster vaccine reduces dementia risk 51% lower risk of dementia (in females > males) even accounting for healthy vacinee bias versus Tdap @natcomms.nature.com
www.nature.com/articles/s41...
February 9, 2026 at 7:06 PM
Reposted by Daphne Superville
S1PR1 signaling biases neutrophils toward long-lived low-inflammatory functional states https://www.biorxiv.org/content/10.64898/2026.02.05.703783v1
February 8, 2026 at 3:17 AM
Reposted by Daphne Superville
Some of the latest work from our lab from outstanding scientist Sensen Lin @ctbatucsf.bsky.social @ucsfcancer.bsky.social

We find MYC- driven #livercancer are dependent on methionine metabolism. This includes a dependence on the ribosomal rRNA methyltransferase NOP2 that is a MYC target. 🧪
Methionine metabolism and the NOP2 methyltransferase are essential for MYC-Driven liver tumorigenesis. https://www.biorxiv.org/content/10.64898/2026.01.28.702329v1
February 8, 2026 at 4:06 AM
Reposted by Daphne Superville
Red blood cells typically don’t move independently, but 1% of those infected by the protozoan parasite Babesia microti show clear directional movement, possibly allowing the parasite to move through the blood and infect new red blood cells. In PNAS: https://ow.ly/L96h50Y9uTK
February 5, 2026 at 11:00 PM
Reposted by Daphne Superville
Now online! Sensory neurons drive immune exclusion by stimulating a dense extracellular matrix in the breast cancer tumor microenvironment
Sensory neurons drive immune exclusion by stimulating a dense extracellular matrix in the breast cancer tumor microenvironment
In the triple-negative breast cancer ecosystem, sensory neurons activate cancer-associated fibroblasts to secrete collagen, thus stimulating a dense extracellular matrix that drives immune exclusion.
dlvr.it
February 5, 2026 at 11:38 PM
Reposted by Daphne Superville
In a preclinical breast cancer metastasis model, the same bacteria strain, when present intracellularly versus extracellularly, exerts opposing effects on tumor immunity by inducing divergent neutrophil states @cellcellpress.bsky.social
www.cell.com/cell/fulltex...
February 4, 2026 at 11:17 PM
Reposted by Daphne Superville
In a new paper, we introduce Metient, a new method to reconstruct the migration history of metastatic clones, and learn cancer-type specific patterns of metastatic spread, from bulk or single-cell sequencing data.

www.nature.com/articles/s41...
Inferring cancer type-specific patterns of metastatic spread using Metient - Nature Methods
Metient is a statistical framework that infers patterns of metastatic spread and reconstructs cancer migration histories.
www.nature.com
January 29, 2026 at 5:46 PM
Reposted by Daphne Superville
Metastasis gets a little help from immune cell mitochondria @cp-cellmetabolism.bsky.social
www.cell.com/cell-metabol...
www.cell.com/cell-metabol...
February 3, 2026 at 10:58 PM
Reposted by Daphne Superville
Single-cell profiling of synchronous multi-organ metastasis reveals a systemic CD74+ lipid-associated macrophage niche driving polymetastatic breast cancer https://www.biorxiv.org/content/10.64898/2026.01.31.701004v1
February 3, 2026 at 5:48 PM
Reposted by Daphne Superville
Methionine metabolism and the NOP2 methyltransferase are essential for MYC-Driven liver tumorigenesis. https://www.biorxiv.org/content/10.64898/2026.01.28.702329v1
January 30, 2026 at 3:48 PM
Reposted by Daphne Superville
Today in @nature.com, we describe how discarded reads in biobank-scale WGS can help resolve the genetic predictors and consequences of Epstein-Barr Virus (EBV) infection.

Wonderful working with @ryandhindsa.bsky.social @sherrynyeo.bsky.social @erinmayc.bsky.social

www.nature.com/articles/s41...
Population-scale sequencing resolves determinants of persistent EBV DNA - Nature
Population-scale WGS reveals genetic determinants of persistent EBV DNA, linking immune regulation—especially antigen processing and MHC class II variation—to EBV persistence and heterogeneous di...
www.nature.com
January 28, 2026 at 5:07 PM
Reposted by Daphne Superville
Just out @natrevimmunol.nature.com
RNA-binding proteins and ribonucleoproteins as determinants of immunity
www.nature.com/articles/s41...
gives our perspective on this growing area of research. Special thanks to the editor Alexandra, for streamlining the manuscript.
RNA-binding proteins and ribonucleoproteins as determinants of immunity - Nature Reviews Immunology
RNA-binding proteins (RBPs) considerably expand the information content of the genome and can determine the lifespan, localization and function of RNA, thereby controlling when, where and how much pro...
www.nature.com
January 27, 2026 at 7:32 AM
Reposted by Daphne Superville
Transcriptomic Plasticity is a Hallmark of Metastatic Pancreatic Cancer, by Christine Iacobuzio-Donahue, @danapeer.bsky.social et al.
pubmed.ncbi.nlm.nih.gov/41379552/
introduces a new single-cell method named PICASSO: Phylogenetic Inference of CNA in Single-cell RNA [...]
github.com/dpeerlab/pic...
Transcriptomic Plasticity is a Hallmark of Metastatic Pancreatic Cancer - PubMed
Metastasis is the leading cause of cancer deaths. To develop strategies for intercepting metastatic progression, a better understanding of how tumor cells adapt to vastly different organ contexts is needed. To investigate this question, a single-cell transcriptomic atlas of primary tumor and diverse …
pubmed.ncbi.nlm.nih.gov
December 12, 2025 at 8:01 PM
Reposted by Daphne Superville
Sharing our latest by Filio Karakousi online today in @cp-cancercell.bsky.social !

authors.elsevier.com/a/1mUU45TA51...

We demonstrate that cytotoxic immune responses metabolically program the lymphatic vasculature to restrain regional metastasis and promote immunity!
January 22, 2026 at 6:09 PM
Reposted by Daphne Superville
💡 Have you ever wondered how #circulating #tumor cells squeeze through narrow #capillaries during hashtag#metastasis ?

💥 We did, check out our latest publication just out #NatureMaterials: rdcu.be/eZHxJ
January 20, 2026 at 1:50 PM