Carolina Monzó
@carolinamonzo.bsky.social
PhD. 🏳️🌈
Immunology, aging and bioinformatics enthusiast. @MSCActions postdoc at @i2sysbio.bsky.social @csic.es
Immunology, aging and bioinformatics enthusiast. @MSCActions postdoc at @i2sysbio.bsky.social @csic.es
Reposted by Carolina Monzó
Dont miss any of our #LongTREC communications at #ISMBECCB2025. Download this flyer to make catching all the latest & hottest long-read transcriptomics research simple.
@anaconesa.bsky.social
@anaconesa.bsky.social
July 21, 2025 at 12:30 PM
Dont miss any of our #LongTREC communications at #ISMBECCB2025. Download this flyer to make catching all the latest & hottest long-read transcriptomics research simple.
@anaconesa.bsky.social
@anaconesa.bsky.social
Reposted by Carolina Monzó
Day 1 of our #SummerSchool : @carolinamonzo.bsky.social , Satrio Wibowo, Mahmud Sami Aydin and @tianyuanliu.bsky.social introducing participants to #LongReads sequencing technologies, how to design #lrRNAseq experiments, library preparation strategies for #lrRNAseq, mapping, QC and more!
July 14, 2025 at 1:24 PM
Day 1 of our #SummerSchool : @carolinamonzo.bsky.social , Satrio Wibowo, Mahmud Sami Aydin and @tianyuanliu.bsky.social introducing participants to #LongReads sequencing technologies, how to design #lrRNAseq experiments, library preparation strategies for #lrRNAseq, mapping, QC and more!
Reposted by Carolina Monzó
We’re kicking off a video series to showcase our network and its mission.
🎥 Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important.
@i2sysbio.es @csic.es
#LongCyclingForScience 🚴🌎
#LongReadsTranscriptomics 🔬 #Outreach4Science ✍
🎥 Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important.
@i2sysbio.es @csic.es
#LongCyclingForScience 🚴🌎
#LongReadsTranscriptomics 🔬 #Outreach4Science ✍
July 10, 2025 at 4:18 PM
We’re kicking off a video series to showcase our network and its mission.
🎥 Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important.
@i2sysbio.es @csic.es
#LongCyclingForScience 🚴🌎
#LongReadsTranscriptomics 🔬 #Outreach4Science ✍
🎥 Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important.
@i2sysbio.es @csic.es
#LongCyclingForScience 🚴🌎
#LongReadsTranscriptomics 🔬 #Outreach4Science ✍
Reposted by Carolina Monzó
Continuing our LongTREC video series, we’re excited to feature Fabio Zanarello from @crg.eu in this next episode.
#LongReadsTranscriptomics #LongCyclingForScience #SustainableScience
#LongReadsTranscriptomics #LongCyclingForScience #SustainableScience
July 11, 2025 at 8:51 AM
Continuing our LongTREC video series, we’re excited to feature Fabio Zanarello from @crg.eu in this next episode.
#LongReadsTranscriptomics #LongCyclingForScience #SustainableScience
#LongReadsTranscriptomics #LongCyclingForScience #SustainableScience
Reposted by Carolina Monzó
Next in out #LongTREC video series : Nadja Nolte, Doctoral Candidate working with Kristina Gruden and Marko Petek at the National Institute of Biology in Ljubljana, Slovenia. Check the video to learn more about her project!
#LongReadsTranscriptomics #Potato #Poliploidy
#LongReadsTranscriptomics #Potato #Poliploidy
July 12, 2025 at 11:20 AM
Next in out #LongTREC video series : Nadja Nolte, Doctoral Candidate working with Kristina Gruden and Marko Petek at the National Institute of Biology in Ljubljana, Slovenia. Check the video to learn more about her project!
#LongReadsTranscriptomics #Potato #Poliploidy
#LongReadsTranscriptomics #Potato #Poliploidy
Reposted by Carolina Monzó
Next in the #LongTREC video series, we turn the spotlight to Satrio Wibowo, under the supervision of@minomatt.bsky.social at
@uniofnottingham.bsky.social, Satrio makes the complex ideas of his project easy to understand with his thoughtful explanation. #LongReadsTranscriptomics #AdaptiveSampling
@uniofnottingham.bsky.social, Satrio makes the complex ideas of his project easy to understand with his thoughtful explanation. #LongReadsTranscriptomics #AdaptiveSampling
July 12, 2025 at 11:21 AM
Next in the #LongTREC video series, we turn the spotlight to Satrio Wibowo, under the supervision of@minomatt.bsky.social at
@uniofnottingham.bsky.social, Satrio makes the complex ideas of his project easy to understand with his thoughtful explanation. #LongReadsTranscriptomics #AdaptiveSampling
@uniofnottingham.bsky.social, Satrio makes the complex ideas of his project easy to understand with his thoughtful explanation. #LongReadsTranscriptomics #AdaptiveSampling
Reposted by Carolina Monzó
Next Up in the #LongTREC Series 📽️ : Yalan Bi!
Yalan is a LongTREC Doctoral Candidate working with Ralf Herwig at @molgen.mpg.de Yalan shares insights into her research project and her experience as part of the LongTREC network. #LongReadsTranscriptomics #AlternativeSplicing #ProteinInteraction
Yalan is a LongTREC Doctoral Candidate working with Ralf Herwig at @molgen.mpg.de Yalan shares insights into her research project and her experience as part of the LongTREC network. #LongReadsTranscriptomics #AlternativeSplicing #ProteinInteraction
July 12, 2025 at 2:21 PM
Next Up in the #LongTREC Series 📽️ : Yalan Bi!
Yalan is a LongTREC Doctoral Candidate working with Ralf Herwig at @molgen.mpg.de Yalan shares insights into her research project and her experience as part of the LongTREC network. #LongReadsTranscriptomics #AlternativeSplicing #ProteinInteraction
Yalan is a LongTREC Doctoral Candidate working with Ralf Herwig at @molgen.mpg.de Yalan shares insights into her research project and her experience as part of the LongTREC network. #LongReadsTranscriptomics #AlternativeSplicing #ProteinInteraction
Reposted by Carolina Monzó
The LongTREC video series continues with Pablo Angulo Lara, a Doctoral Candidate at @iitalk.bsky.social, where he works under the supervision of Francesco Nicassio.
In this video, Pablo talks about his research and its impact.
#LongReadsTranscriptomics #aneuploidy #cancer #computationalpipelines
In this video, Pablo talks about his research and its impact.
#LongReadsTranscriptomics #aneuploidy #cancer #computationalpipelines
July 12, 2025 at 2:29 PM
The LongTREC video series continues with Pablo Angulo Lara, a Doctoral Candidate at @iitalk.bsky.social, where he works under the supervision of Francesco Nicassio.
In this video, Pablo talks about his research and its impact.
#LongReadsTranscriptomics #aneuploidy #cancer #computationalpipelines
In this video, Pablo talks about his research and its impact.
#LongReadsTranscriptomics #aneuploidy #cancer #computationalpipelines
Reposted by Carolina Monzó
📽️ From 🌞 Valencia: Meet Fabian Jetzinger in the LongTREC Series!
Fabian is a Doctoral Candidate at BioBam Bioinformatics, working under the supervision of Stefan Götz, PhD. He is working to make the analysis of long-read RNA sequencing data more user-friendly in #OmicsBox
tinyurl.com/nkszjjm5
Fabian is a Doctoral Candidate at BioBam Bioinformatics, working under the supervision of Stefan Götz, PhD. He is working to make the analysis of long-read RNA sequencing data more user-friendly in #OmicsBox
tinyurl.com/nkszjjm5
📽️ From 🌞 Valencia: Meet Fabian Jetzinger in the LongTREC Series! | LongTREC
📽️ From 🌞 Valencia: Meet Fabian Jetzinger in the LongTREC Series!
Fabian is a Doctoral Candidate at BioBam Bioinformatics, working under the supervision of Stefan Götz, PhD. He is working to make the...
www.linkedin.com
July 13, 2025 at 8:24 AM
📽️ From 🌞 Valencia: Meet Fabian Jetzinger in the LongTREC Series!
Fabian is a Doctoral Candidate at BioBam Bioinformatics, working under the supervision of Stefan Götz, PhD. He is working to make the analysis of long-read RNA sequencing data more user-friendly in #OmicsBox
tinyurl.com/nkszjjm5
Fabian is a Doctoral Candidate at BioBam Bioinformatics, working under the supervision of Stefan Götz, PhD. He is working to make the analysis of long-read RNA sequencing data more user-friendly in #OmicsBox
tinyurl.com/nkszjjm5
Reposted by Carolina Monzó
📽️ Next in the LongTREC Series: Mahmud Sami Aydin!
Sami is a Doctoral Candidate at @stockholm-uni.bsky.social , working under the supervision of @ksahlin.bsky.social .In this video, Sami shares his research and his role in the broader LongTREC collaboration across Europe.
#AlgorithmDevelopment
Sami is a Doctoral Candidate at @stockholm-uni.bsky.social , working under the supervision of @ksahlin.bsky.social .In this video, Sami shares his research and his role in the broader LongTREC collaboration across Europe.
#AlgorithmDevelopment
July 13, 2025 at 8:28 AM
📽️ Next in the LongTREC Series: Mahmud Sami Aydin!
Sami is a Doctoral Candidate at @stockholm-uni.bsky.social , working under the supervision of @ksahlin.bsky.social .In this video, Sami shares his research and his role in the broader LongTREC collaboration across Europe.
#AlgorithmDevelopment
Sami is a Doctoral Candidate at @stockholm-uni.bsky.social , working under the supervision of @ksahlin.bsky.social .In this video, Sami shares his research and his role in the broader LongTREC collaboration across Europe.
#AlgorithmDevelopment
Reposted by Carolina Monzó
🌊 Exploring the Ocean’s Genetic Secrets! Guided by @jm-aury.bsky.social and France Denoeud, @lafucarmen.bsky.social Doctoral Candidate at Genoscope - Centre National de Séquençage, shares how she's using long-reads on marine samples from the Tara Oceans expedition to explore genetic novelty.
July 13, 2025 at 8:37 AM
🌊 Exploring the Ocean’s Genetic Secrets! Guided by @jm-aury.bsky.social and France Denoeud, @lafucarmen.bsky.social Doctoral Candidate at Genoscope - Centre National de Séquençage, shares how she's using long-reads on marine samples from the Tara Oceans expedition to explore genetic novelty.
Reposted by Carolina Monzó
🚀 SQANTI-verse Cards are here! ✨
If you want to get'em all, just follow these steps:
1️⃣ Use one of the SQANTI tools from our Github
2️⃣ Generate amazing data and publish your results
3️⃣ Tag us when you share your publication
We’ll send you a card!
8 are already available & more are coming 🌌
#SQANTIverse
If you want to get'em all, just follow these steps:
1️⃣ Use one of the SQANTI tools from our Github
2️⃣ Generate amazing data and publish your results
3️⃣ Tag us when you share your publication
We’ll send you a card!
8 are already available & more are coming 🌌
#SQANTIverse
June 3, 2025 at 9:50 AM
🚀 SQANTI-verse Cards are here! ✨
If you want to get'em all, just follow these steps:
1️⃣ Use one of the SQANTI tools from our Github
2️⃣ Generate amazing data and publish your results
3️⃣ Tag us when you share your publication
We’ll send you a card!
8 are already available & more are coming 🌌
#SQANTIverse
If you want to get'em all, just follow these steps:
1️⃣ Use one of the SQANTI tools from our Github
2️⃣ Generate amazing data and publish your results
3️⃣ Tag us when you share your publication
We’ll send you a card!
8 are already available & more are coming 🌌
#SQANTIverse
Reposted by Carolina Monzó
Original article: www.nature.com/articles/s41...
🧬🖥️ 👩🔬 🧪
The article explains how long-read transcriptomics enables the study of isoform expression, discovery of novel RNAs, gene annotation in understudied species, and differential expression between paternal and maternal chromosomes, etc.
🧬🖥️ 👩🔬 🧪
The article explains how long-read transcriptomics enables the study of isoform expression, discovery of novel RNAs, gene annotation in understudied species, and differential expression between paternal and maternal chromosomes, etc.
Transcriptomics in the era of long-read sequencing - Nature Reviews Genetics
Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read RNA sequencing, including expe...
www.nature.com
May 9, 2025 at 8:46 AM
Original article: www.nature.com/articles/s41...
🧬🖥️ 👩🔬 🧪
The article explains how long-read transcriptomics enables the study of isoform expression, discovery of novel RNAs, gene annotation in understudied species, and differential expression between paternal and maternal chromosomes, etc.
🧬🖥️ 👩🔬 🧪
The article explains how long-read transcriptomics enables the study of isoform expression, discovery of novel RNAs, gene annotation in understudied species, and differential expression between paternal and maternal chromosomes, etc.
Reposted by Carolina Monzó
I2SysBio @csic.es researchers Ana Conesa @anaconesa.bsky.social, Carolina Monzó @carolinamonzo.bsky.social and Tianyuan Liu @tianyuanliu.bsky.social published an article on #long-read #transcriptomics in Nature Reviews Genomics.
More information: i2sysbio.es/communicatio... ⬇️
More information: i2sysbio.es/communicatio... ⬇️
I2SysBio explores a new gene sequencing technique to help decipher diseases such as cancer
<h1> </h1>
<h3><strong> This revision of the long-read transcriptomic sequencing technology allows a more precise analysis of the RNA molecules present in cells with essential information f...
i2sysbio.es
May 9, 2025 at 8:46 AM
I2SysBio @csic.es researchers Ana Conesa @anaconesa.bsky.social, Carolina Monzó @carolinamonzo.bsky.social and Tianyuan Liu @tianyuanliu.bsky.social published an article on #long-read #transcriptomics in Nature Reviews Genomics.
More information: i2sysbio.es/communicatio... ⬇️
More information: i2sysbio.es/communicatio... ⬇️
Reposted by Carolina Monzó
📢 Exciting news! We will soon open two PhD positions at @i2sysbio.bsky.social @csic.es, in research projects in collaboration with the @bsc-cns.bsky.social. Both are related to tools to simulate biological tissues. Here’s the description of the open positions. #PhDpositions #PhDOpportunities
👇
👇
May 6, 2025 at 8:46 AM
📢 Exciting news! We will soon open two PhD positions at @i2sysbio.bsky.social @csic.es, in research projects in collaboration with the @bsc-cns.bsky.social. Both are related to tools to simulate biological tissues. Here’s the description of the open positions. #PhDpositions #PhDOpportunities
👇
👇
Reposted by Carolina Monzó
Time is running out to register for our #LongTREC summer school - Consider joining us in Norwich this summer at the @earlhaminst.bsky.social to level up your #LongReads #bioinformatics #transcriptomics skills. Click the link below to learn more. We're looking forward to meeting you all in July!
Join the #longreads #bioinformatics summer school led by @longtrec.bsky.social doctoral network, introducing students, doctoral candidates and early career researchers into the exciting world of long-reads! 🧬🖥️
📅 Register by: 29 May
buff.ly/OBdaEfO
📅 Register by: 29 May
buff.ly/OBdaEfO
May 7, 2025 at 11:17 AM
Time is running out to register for our #LongTREC summer school - Consider joining us in Norwich this summer at the @earlhaminst.bsky.social to level up your #LongReads #bioinformatics #transcriptomics skills. Click the link below to learn more. We're looking forward to meeting you all in July!
Reposted by Carolina Monzó
La nota de prensa de @dicv.csic.es de @csic.es resume los grandes logros de @conesalab.bsky.social en I2SysBio. Ana Conesa @anaconesa.bsky.social y Carolina Monzó @carolinamonzo.bsky.social explican su artículo publicado en Nature Reviews Genetics sobre la transcriptómica de lecturas largas #RNAseq
El @csic.es analiza una nueva técnica de secuenciación génica que ayudará a descifrar enfermedades como el #cáncer, a conocer mejor la resistencia de las plantas o a examinar virus y bacterias. @anaconesa.bsky.social @carolinamonzo.bsky.social
delegacion.comunitatvalenciana.csic.es/el-csic-anal...
delegacion.comunitatvalenciana.csic.es/el-csic-anal...
May 6, 2025 at 3:43 PM
La nota de prensa de @dicv.csic.es de @csic.es resume los grandes logros de @conesalab.bsky.social en I2SysBio. Ana Conesa @anaconesa.bsky.social y Carolina Monzó @carolinamonzo.bsky.social explican su artículo publicado en Nature Reviews Genetics sobre la transcriptómica de lecturas largas #RNAseq
Reposted by Carolina Monzó
El @csic.es analiza una nueva técnica de secuenciación génica que ayudará a descifrar enfermedades como el #cáncer, a conocer mejor la resistencia de las plantas o a examinar virus y bacterias. @anaconesa.bsky.social @carolinamonzo.bsky.social
delegacion.comunitatvalenciana.csic.es/el-csic-anal...
delegacion.comunitatvalenciana.csic.es/el-csic-anal...
May 6, 2025 at 8:05 AM
El @csic.es analiza una nueva técnica de secuenciación génica que ayudará a descifrar enfermedades como el #cáncer, a conocer mejor la resistencia de las plantas o a examinar virus y bacterias. @anaconesa.bsky.social @carolinamonzo.bsky.social
delegacion.comunitatvalenciana.csic.es/el-csic-anal...
delegacion.comunitatvalenciana.csic.es/el-csic-anal...
Reposted by Carolina Monzó
Summary of the work of our researchers @carolinamonzo.bsky.social @anaconesa.bsky.social published recently in Nature Reviews Genetics #bioinformatics #transcriptomics #RNAseq 🧬🖥🧪👩🔬
Big thanks to RSG-Spain for their beautiful post summarising some highlights of our recent review on #LongReads transcriptomics published on @natrevgenet.nature.com. bit.ly/lrRNA-seq
@anaconesa.bsky.social @i2sysbio.bsky.social @longtrec.bsky.social
@anaconesa.bsky.social @i2sysbio.bsky.social @longtrec.bsky.social
April 16, 2025 at 8:07 PM
Summary of the work of our researchers @carolinamonzo.bsky.social @anaconesa.bsky.social published recently in Nature Reviews Genetics #bioinformatics #transcriptomics #RNAseq 🧬🖥🧪👩🔬
Reposted by Carolina Monzó
FYI: New online! Transcriptomics in the era of long-read sequencing
Transcriptomics in the era of long-read sequencing
Nature Reviews Genetics, Published online: 28 March 2025; doi:10.1038/s41576-025-00828-zAdvances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read RNA sequencing, including experimental and computational tools, current applications, challenges and opportunities.
www.nature.com
April 18, 2025 at 11:24 AM
FYI: New online! Transcriptomics in the era of long-read sequencing
Big thanks to RSG-Spain for their beautiful post summarising some highlights of our recent review on #LongReads transcriptomics published on @natrevgenet.nature.com. bit.ly/lrRNA-seq
@anaconesa.bsky.social @i2sysbio.bsky.social @longtrec.bsky.social
@anaconesa.bsky.social @i2sysbio.bsky.social @longtrec.bsky.social
April 16, 2025 at 2:55 PM
Big thanks to RSG-Spain for their beautiful post summarising some highlights of our recent review on #LongReads transcriptomics published on @natrevgenet.nature.com. bit.ly/lrRNA-seq
@anaconesa.bsky.social @i2sysbio.bsky.social @longtrec.bsky.social
@anaconesa.bsky.social @i2sysbio.bsky.social @longtrec.bsky.social
Reposted by Carolina Monzó
Part 1 and 2 of the Long-read sequencing Special Issues are now live! tinyurl.com/Genome-Res-LRS
April 14, 2025 at 8:12 PM
Part 1 and 2 of the Long-read sequencing Special Issues are now live! tinyurl.com/Genome-Res-LRS
Reposted by Carolina Monzó
Not 1, not 2, but 3 new papers by @conesalab.bsky.social published today in the special issue on long-read sequencing. Find our latest work on SQANTI-reads, genome annotation with lrRNA-seq evidence, and a Perspective in Transcript Divergence. tinyurl.com/GRLong @longtrec.bsky.social
Long-read Sequencing Special Collection
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
tinyurl.com
April 15, 2025 at 3:20 PM
Not 1, not 2, but 3 new papers by @conesalab.bsky.social published today in the special issue on long-read sequencing. Find our latest work on SQANTI-reads, genome annotation with lrRNA-seq evidence, and a Perspective in Transcript Divergence. tinyurl.com/GRLong @longtrec.bsky.social
Reposted by Carolina Monzó
happy to share our new study! 🧪
while exploring how often #sars-cov-2 "repairs" deletions in BA.1, we found significant genome artifacts in GISAID 🤯 we compared with raw reads from ENA + tested the effects in vitro. turns out, data processing matters a lot 📉
check it out!! doi.org/10.1093/ve/v...
while exploring how often #sars-cov-2 "repairs" deletions in BA.1, we found significant genome artifacts in GISAID 🤯 we compared with raw reads from ENA + tested the effects in vitro. turns out, data processing matters a lot 📉
check it out!! doi.org/10.1093/ve/v...
Genome data artifacts and functional studies of deletion repair in the BA.1 SARS-CoV-2 spike protein
Abstract. Mutations within the N-terminal domain (NTD) of the spike (S) protein are critical for the emergence of successful SARS-CoV-2 viral lineages. The
doi.org
April 3, 2025 at 3:11 PM
happy to share our new study! 🧪
while exploring how often #sars-cov-2 "repairs" deletions in BA.1, we found significant genome artifacts in GISAID 🤯 we compared with raw reads from ENA + tested the effects in vitro. turns out, data processing matters a lot 📉
check it out!! doi.org/10.1093/ve/v...
while exploring how often #sars-cov-2 "repairs" deletions in BA.1, we found significant genome artifacts in GISAID 🤯 we compared with raw reads from ENA + tested the effects in vitro. turns out, data processing matters a lot 📉
check it out!! doi.org/10.1093/ve/v...
Reposted by Carolina Monzó
ICYMI: New online! Transcriptomics in the era of long-read sequencing
Transcriptomics in the era of long-read sequencing
Nature Reviews Genetics, Published online: 28 March 2025; doi:10.1038/s41576-025-00828-zAdvances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read RNA sequencing, including experimental and computational tools, current applications, challenges and opportunities.
www.nature.com
April 4, 2025 at 11:23 AM
ICYMI: New online! Transcriptomics in the era of long-read sequencing