Ana Conesa
@anaconesa.bsky.social
Computer scientist at I2SysBio-CSIC. Transcriptomics, long-reads, multiomics, tool developer. Promoter of Green Science. Finally happy!
Reposted by Ana Conesa
Transcriptomics in the era of long-read sequencing
#Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @csic.es
Free to read here: rdcu.be/efBjP
#Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @csic.es
Free to read here: rdcu.be/efBjP
Transcriptomics in the era of long-read sequencing
Nature Reviews Genetics - Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read...
rdcu.be
December 17, 2025 at 12:31 PM
Transcriptomics in the era of long-read sequencing
#Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @csic.es
Free to read here: rdcu.be/efBjP
#Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @csic.es
Free to read here: rdcu.be/efBjP
Our latest preprint on how to best combine multiple samples in lrRNA-seq experiment. Not, trivial as your capacity for detecting known and novel transcripts is affected. We discovered that results depend on data and reconstruction algorithm. @nanoporetech.com @pacbio.bsky.social
tinyurl.com/4pnnbd92
tinyurl.com/4pnnbd92
To join or not to join: handling biological replicates in long-read RNA sequencing data
Long-read RNA sequencing (lrRNA-seq) has revolutionized transcriptomics facilitating the study of alternative splicing and resulting in identification of thousands of novel transcripts. While isoform ...
www.biorxiv.org
December 13, 2025 at 11:12 AM
Our latest preprint on how to best combine multiple samples in lrRNA-seq experiment. Not, trivial as your capacity for detecting known and novel transcripts is affected. We discovered that results depend on data and reconstruction algorithm. @nanoporetech.com @pacbio.bsky.social
tinyurl.com/4pnnbd92
tinyurl.com/4pnnbd92
I am SOOO excited to welcome our brand-new VEGA instrument, made possible through a collaboration among @uv.es @i2sysbio.es and @pacbio.bsky.social . Months ago, we fantasized about having one, and now this is a reality. I can´t wait to run the many projects we have in the pipeline!
December 10, 2025 at 7:37 AM
I am SOOO excited to welcome our brand-new VEGA instrument, made possible through a collaboration among @uv.es @i2sysbio.es and @pacbio.bsky.social . Months ago, we fantasized about having one, and now this is a reality. I can´t wait to run the many projects we have in the pipeline!
Reposted by Ana Conesa
Reposted by Ana Conesa
. @patrickoshag.bsky.social discusses data centers on space with @gavinsbaker
December 10, 2025 at 6:50 AM
. @patrickoshag.bsky.social discusses data centers on space with @gavinsbaker
Looking for a postdoc in computational biology? We are looking for a postdoc candidate apply for the fellowship 'Juan de la Cierva' for a project on long-read transcriptomics, multiomics, spatial transcriptomics, single-cell long-reads. Deadline is approaching!! (December 10th)
December 8, 2025 at 12:06 PM
Looking for a postdoc in computational biology? We are looking for a postdoc candidate apply for the fellowship 'Juan de la Cierva' for a project on long-read transcriptomics, multiomics, spatial transcriptomics, single-cell long-reads. Deadline is approaching!! (December 10th)
This is a very exciting opportunity to connect researchers working on RNA data analysis issues. I can´t wait to see this community growing!!! @bcbhubcsic.bsky.social @i2sysbio.es @hitseq.bsky.social @conesalab.bsky.social
📣 A new RNA Focus Group has been formed that brings together experts 🙌 from across ELIXIR to improve standards and benchmarking for #RNA_data.
Read the news: https://loom.ly/QD3C_Ac
Read the news: https://loom.ly/QD3C_Ac
November 20, 2025 at 10:58 AM
This is a very exciting opportunity to connect researchers working on RNA data analysis issues. I can´t wait to see this community growing!!! @bcbhubcsic.bsky.social @i2sysbio.es @hitseq.bsky.social @conesalab.bsky.social
Hoy participo en las Conversaciones Sostenibles del @csic.es en el IDAEA-CSIC para discutir la huella (in)sostenible de la computación @bcbhubcsic.bsky.social @i2sysbio.es @conesalab.bsky.social
November 13, 2025 at 10:17 AM
Hoy participo en las Conversaciones Sostenibles del @csic.es en el IDAEA-CSIC para discutir la huella (in)sostenible de la computación @bcbhubcsic.bsky.social @i2sysbio.es @conesalab.bsky.social
And we are not alone!!! Our project on LrRNASeq benchmarking gathered an amazing team of hackers here in Berlin and in Australia!! @conesalab.bsky.social @bcbhubcsic.bsky.social
November 5, 2025 at 2:29 PM
And we are not alone!!! Our project on LrRNASeq benchmarking gathered an amazing team of hackers here in Berlin and in Australia!! @conesalab.bsky.social @bcbhubcsic.bsky.social
We’re thrilled to announce the first symposium dedicated to #LongReadsTranscriptomics, taking place in Valencia, Spain!
More information available at: 👉 longtrec.eu/VALT/
If you want to keep updated, sign up here: 👉 shorturl.at/Qmb5D. @pacbio.bsky.social @hitseq.bsky.social @iscb.bsky.social
More information available at: 👉 longtrec.eu/VALT/
If you want to keep updated, sign up here: 👉 shorturl.at/Qmb5D. @pacbio.bsky.social @hitseq.bsky.social @iscb.bsky.social
October 28, 2025 at 2:42 PM
We’re thrilled to announce the first symposium dedicated to #LongReadsTranscriptomics, taking place in Valencia, Spain!
More information available at: 👉 longtrec.eu/VALT/
If you want to keep updated, sign up here: 👉 shorturl.at/Qmb5D. @pacbio.bsky.social @hitseq.bsky.social @iscb.bsky.social
More information available at: 👉 longtrec.eu/VALT/
If you want to keep updated, sign up here: 👉 shorturl.at/Qmb5D. @pacbio.bsky.social @hitseq.bsky.social @iscb.bsky.social
Looking for scientists working with long-read transcriptomics technologies to join a COST action proposal. Contact us!!! @nanoporetech.com @pacbio.bsky.social
October 2, 2025 at 5:25 PM
Looking for scientists working with long-read transcriptomics technologies to join a COST action proposal. Contact us!!! @nanoporetech.com @pacbio.bsky.social
Yesterday, I had the absolute pleasure of joining the National Genetics Course of @segenetica.bsky.social
at the stunning Cristalera, teaching about long-read transcriptomics. 🧬✨
Inspiring discussions with brilliant young scientists and a joy to reconnect with old friends. Huge thanks! 🙌
at the stunning Cristalera, teaching about long-read transcriptomics. 🧬✨
Inspiring discussions with brilliant young scientists and a joy to reconnect with old friends. Huge thanks! 🙌
September 19, 2025 at 5:42 PM
Yesterday, I had the absolute pleasure of joining the National Genetics Course of @segenetica.bsky.social
at the stunning Cristalera, teaching about long-read transcriptomics. 🧬✨
Inspiring discussions with brilliant young scientists and a joy to reconnect with old friends. Huge thanks! 🙌
at the stunning Cristalera, teaching about long-read transcriptomics. 🧬✨
Inspiring discussions with brilliant young scientists and a joy to reconnect with old friends. Huge thanks! 🙌
Comparto este reportaje en Las Provincias sobre el trabajo de nuestro laboratorio
www.lasprovincias.es/sociedad/can... @bcbhubcsic.bsky.social @i2sysbio.es @conesalab.bsky.social @csic.es
www.lasprovincias.es/sociedad/can... @bcbhubcsic.bsky.social @i2sysbio.es @conesalab.bsky.social @csic.es
La revolución de la secuenciación génica: una lupa sobre el envejecimiento y las enfermedades que nos afectan al cumplir años | Las Provincias
La secuenciación de lectura larga permite analizar el envejecimiento celular con precisión inédita, abriendo nuevas vías para comprender y retrasar este proceso
www.lasprovincias.es
August 29, 2025 at 7:43 AM
Comparto este reportaje en Las Provincias sobre el trabajo de nuestro laboratorio
www.lasprovincias.es/sociedad/can... @bcbhubcsic.bsky.social @i2sysbio.es @conesalab.bsky.social @csic.es
www.lasprovincias.es/sociedad/can... @bcbhubcsic.bsky.social @i2sysbio.es @conesalab.bsky.social @csic.es
Reposted by Ana Conesa
🎉 @anaconesa.bsky.social, researcher at #I2SysBio ( @csic.es/@uv.es), has been elected Vice President of the ISCB (@iscb.bsky.social) one of the most influential organizations in the field of bioinformatics and computational biology.
👏 Congratulations, Ana!
www.i2sysbio.es/communicatio...
👏 Congratulations, Ana!
www.i2sysbio.es/communicatio...
Ana Conesa, researcher at I2SysBio, elected Vice-President of the International Society for Computational Biology
<p><strong>Ana Conesa, a researcher at the Institute of Systems Biology (I2SysBio, a joint UV/CSIC centre), has been appointed Vice-President of the International Society for Computational Biology (IS...
www.i2sysbio.es
August 26, 2025 at 7:59 AM
🎉 @anaconesa.bsky.social, researcher at #I2SysBio ( @csic.es/@uv.es), has been elected Vice President of the ISCB (@iscb.bsky.social) one of the most influential organizations in the field of bioinformatics and computational biology.
👏 Congratulations, Ana!
www.i2sysbio.es/communicatio...
👏 Congratulations, Ana!
www.i2sysbio.es/communicatio...
Reposted by Ana Conesa
BCBHub congratulates our Coordinator Ana Conesa on becoming the new Vice-President of ISCB! @bcbhubcsic.bsky.social @anaconesa.bsky.social @i2sysbio.es @iscb.bsky.social
August 25, 2025 at 11:26 AM
BCBHub congratulates our Coordinator Ana Conesa on becoming the new Vice-President of ISCB! @bcbhubcsic.bsky.social @anaconesa.bsky.social @i2sysbio.es @iscb.bsky.social
I’m truly honored to be elected Vice President of ISCB, and heartfelt thank all ISCB members for your trust and support.
I’m excited to work alongside Bonnie and the rest of the EC to keep building a strong, sustainable, inclusive, and forward-looking community for computational biologists worldwide
I’m excited to work alongside Bonnie and the rest of the EC to keep building a strong, sustainable, inclusive, and forward-looking community for computational biologists worldwide
The results of the ISCB Leadership vote are in!
Terms for the ISCB President-Elect and ISCB Vice President will start on January 21, 2026.
Terms for the ISCB President-Elect and ISCB Vice President will start on January 21, 2026.
August 14, 2025 at 6:03 AM
I’m truly honored to be elected Vice President of ISCB, and heartfelt thank all ISCB members for your trust and support.
I’m excited to work alongside Bonnie and the rest of the EC to keep building a strong, sustainable, inclusive, and forward-looking community for computational biologists worldwide
I’m excited to work alongside Bonnie and the rest of the EC to keep building a strong, sustainable, inclusive, and forward-looking community for computational biologists worldwide
I enjoyed reading this paper by @hubertr.bsky.social lab comparing artifacts in scRNAseq vs sc-Isoseq @pacbio.bsky.social Concluded standard pigeon filtering may remove too many isoforms, a problem we address in SQANTI3 through our Resue step. Any plans to try this? pubmed.ncbi.nlm.nih.gov/40630932/
Comparison of single-cell long-read and short-read transcriptome sequencing via cDNA molecule matching: quality evaluation of the MAS-ISO-seq approach - PubMed
Single-cell RNA sequencing is used for profiling gene expression differences between cells. It can be performed with short reads, which provide high-throughput and high-quality information at the gene...
pubmed.ncbi.nlm.nih.gov
August 8, 2025 at 4:43 PM
I enjoyed reading this paper by @hubertr.bsky.social lab comparing artifacts in scRNAseq vs sc-Isoseq @pacbio.bsky.social Concluded standard pigeon filtering may remove too many isoforms, a problem we address in SQANTI3 through our Resue step. Any plans to try this? pubmed.ncbi.nlm.nih.gov/40630932/
🎉 Proud to announce that @conesalab.bsky.social has a new website!
Explore our research, news, and projects — and now also listen our brand-new podcast 🎙️. Whether you are commuting to work or biking 🚴♀️ to a conference, you can now take us with you! First podcast is, of course,.... The #SQANTIverse
Explore our research, news, and projects — and now also listen our brand-new podcast 🎙️. Whether you are commuting to work or biking 🚴♀️ to a conference, you can now take us with you! First podcast is, of course,.... The #SQANTIverse
Main Page of the ConesaLab research group
Main Page of the ConesaLab research group where we present the tools and research lines developed by the group.
conesalab.org
August 6, 2025 at 2:54 PM
🎉 Proud to announce that @conesalab.bsky.social has a new website!
Explore our research, news, and projects — and now also listen our brand-new podcast 🎙️. Whether you are commuting to work or biking 🚴♀️ to a conference, you can now take us with you! First podcast is, of course,.... The #SQANTIverse
Explore our research, news, and projects — and now also listen our brand-new podcast 🎙️. Whether you are commuting to work or biking 🚴♀️ to a conference, you can now take us with you! First podcast is, of course,.... The #SQANTIverse
The July blog-post of the @conesalab.bsky.social is out! Intense activities right before the break: visits, conferences, @longtrec.bsky.social summer school, and biking for sustainable science @i2sysbio.es @hitseq.bsky.social @bcbhubcsic.bsky.social @iscb.bsky.social
conesalab.uv.es/july-from-va...
conesalab.uv.es/july-from-va...
July: From Valencia’s pool to Liverpool | Genomics of Gene Expression
As summer has finally arrived, things in the ConesaLab have taken a more relaxed tone. To begin the month, Roc Martin came to visit us to learn about long-read transcriptomics. Roc was a participant…
conesalab.uv.es
August 4, 2025 at 9:07 AM
The July blog-post of the @conesalab.bsky.social is out! Intense activities right before the break: visits, conferences, @longtrec.bsky.social summer school, and biking for sustainable science @i2sysbio.es @hitseq.bsky.social @bcbhubcsic.bsky.social @iscb.bsky.social
conesalab.uv.es/july-from-va...
conesalab.uv.es/july-from-va...
@hitseq.bsky.social is kicking off with our first keynote @valboeva.bsky.social talking about "Learning variant effects on chromatin accessibility and 3D structure without matched Hi-C data". #ISMBECCB2025
July 23, 2025 at 10:40 AM
@hitseq.bsky.social is kicking off with our first keynote @valboeva.bsky.social talking about "Learning variant effects on chromatin accessibility and 3D structure without matched Hi-C data". #ISMBECCB2025
The @bcbhubcsic.bsky.social is further represented at #ISMBECCB2025 by talks of key members in COSIs: @arnaumontagud.bsky.social at SysMod: "benchmark of multiscale tools"; @anarojas.bsky.social at Function "pLM in functional annotation"; @tianyuanliu.bsky.social at iRNA "TUSCO lrRNA-seq benchmark"
July 22, 2025 at 11:29 AM
The @bcbhubcsic.bsky.social is further represented at #ISMBECCB2025 by talks of key members in COSIs: @arnaumontagud.bsky.social at SysMod: "benchmark of multiscale tools"; @anarojas.bsky.social at Function "pLM in functional annotation"; @tianyuanliu.bsky.social at iRNA "TUSCO lrRNA-seq benchmark"
The @bcbhubcsic.bsky.social from @csic.es sponsors #ISMBECCB2025 with travel fellowships. Check out the posters by the young researchers of our network: D-202 (Carlos Blanco: SQANTI-single cell); C-536 (Yosra Berrouayel: TFEA.ChIP), D-495 (Alicia Santamaria: Chromatinsight).
July 22, 2025 at 11:22 AM
The @bcbhubcsic.bsky.social from @csic.es sponsors #ISMBECCB2025 with travel fellowships. Check out the posters by the young researchers of our network: D-202 (Carlos Blanco: SQANTI-single cell); C-536 (Yosra Berrouayel: TFEA.ChIP), D-495 (Alicia Santamaria: Chromatinsight).
Second day of #ismbeccb2025 conference, @iscb.bsky.social CEO Diane Covats reminds us the commitment of the society with sustainability.Sign up the green Pledge tinyurl.com/GreenISCB, participate in the challenges and help to reduce our carbon footprint
July 22, 2025 at 8:00 AM
Second day of #ismbeccb2025 conference, @iscb.bsky.social CEO Diane Covats reminds us the commitment of the society with sustainability.Sign up the green Pledge tinyurl.com/GreenISCB, participate in the challenges and help to reduce our carbon footprint
Reposted by Ana Conesa
Dont miss any of our #LongTREC communications at #ISMBECCB2025. Download this flyer to make catching all the latest & hottest long-read transcriptomics research simple.
@anaconesa.bsky.social
@anaconesa.bsky.social
July 21, 2025 at 12:30 PM
Dont miss any of our #LongTREC communications at #ISMBECCB2025. Download this flyer to make catching all the latest & hottest long-read transcriptomics research simple.
@anaconesa.bsky.social
@anaconesa.bsky.social
@longtrec.bsky.social is presenting the latest & hottest long-read transcriptomics research at #ISMBECCB2025! Posters D-176 (isONclust3), C-207 (Multisample isoforms), C-237 (TSS prediction), D-202 (Single-cellSQANTI), and talks at iRNA (TUSCO, Amanita) and HitSeq (SQANTI-reads) @hitseq.bsky.social
July 21, 2025 at 10:28 AM
@longtrec.bsky.social is presenting the latest & hottest long-read transcriptomics research at #ISMBECCB2025! Posters D-176 (isONclust3), C-207 (Multisample isoforms), C-237 (TSS prediction), D-202 (Single-cellSQANTI), and talks at iRNA (TUSCO, Amanita) and HitSeq (SQANTI-reads) @hitseq.bsky.social