Travis Mallard
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wakeworksleep.bsky.social
Travis Mallard
@wakeworksleep.bsky.social
asst prof | clinical psychologist | some sort of geneticist | not a neuroscientist | mass general & harvard med | engagement ≠ endorsement
Reposted by Travis Mallard
First time on Bsky and first big announcement!

I am excited to announce that our new study explaining the missing heritability of many phenotypes using WGS data from ~347,000 UK Biobank participants has just been published in @Nature.

Our manuscript is here: www.nature.com/articles/s41....
Estimation and mapping of the missing heritability of human phenotypes - Nature
WGS data were used from 347,630 individuals with European ancestry in the UK Biobank to obtain high-precision estimates of coding and non-coding rare variant heritability for 34 co...
www.nature.com
November 12, 2025 at 5:57 PM
Reposted by Travis Mallard
When do machine learning models actually outperform standard polygenic scores? 🤔

In our new preprint, we benchmark how non-additive genetic effects (i.e, dominance deviations) shape polygenic prediction across simulated and UK Biobank traits.

👉 www.medrxiv.org/content/10.1...

🧵 1/6
Benchmarking non-additive genetic effects on polygenic prediction and machine learning-based approaches
Polygenic scores (PGSs) are widely used to translate genome-wide association study (GWAS) findings into tools for genetic risk prediction. Most current approaches assume additive effects, yet the cont...
www.medrxiv.org
October 14, 2025 at 11:14 AM
Reposted by Travis Mallard
Some recent work led by @peterjonghona.bsky.social and myself at @yaleschoolofmed.bsky.social looks at environmental, psychiatric, and genetic predictors of alcohol use disorder.

Online today at The American Journal of Psychiatry (@apapsychiatric.bsky.social):

psychiatryonline.org/doi/10.1176/...
September 24, 2025 at 7:34 PM
Reposted by Travis Mallard
I'm looking for a PhD student to do some trailblazing at the frontier of personality genomics and lifespan gene-environment transactions (start Fall 2026)! If you want to work with me: psychology.msu.edu/graduatestud...
(PS @drmeltemyucel.bsky.social is taking a student too, in moral psych/dev!)
September 2, 2025 at 3:57 PM
Reposted by Travis Mallard
Now on CRAN, ggdiagram is a #ggplot2 extension that draws diagrams programmatically in #Rstats. Allows for precise control in how objects, labels, and equations are placed in relation to each other.
wjschne.github.io/ggdiagram/ar...
August 20, 2025 at 10:43 AM
Reposted by Travis Mallard
The field of neuroscience views the goal of human genetics as "finding genes". This is an outdated view. In whole genome studies of rare variants, finding genes is the easy part. The more interesting and important goal is to map out the causal pathway from genes to brain function to cognitive traits
A cross-disorder analysis of CNVs finds novel loci and dose-dependent relationships of genes to psychiatric traits https://www.medrxiv.org/content/10.1101/2025.07.11.25331310v1
July 16, 2025 at 2:47 PM
Reposted by Travis Mallard
Excited about our new preprint: 1st successful genome-wide study of >61,000 panic attack and 29,000 panic disorder cases. www.medrxiv.org/content/10.1... We find 17 associations & evidence that peripheral neurons in eye, lungs and heart are involved in panic & other psychiatric disorders 1/n
June 17, 2025 at 10:50 AM
Reposted by Travis Mallard
Examining the sensitivity for environmental influences by conducting a GWAS on differences between identical twins - very clever design!

Out now in @nathumbehav.nature.com : www.nature.com/articles/s41...
June 10, 2025 at 2:16 PM
Reposted by Travis Mallard
Extremely excited to share the first effort of the Revived Genomics of Personality Consortium: A highly-powered, comprehensive GWAS of the Big Five personality traits in 1.14 million participants from 46 cohorts. www.biorxiv.org/content/10.1...
May 20, 2025 at 10:14 AM
Reposted by Travis Mallard
New study from the @pgcgenetics.bsky.social:

Multi-ancestry GWAS of MDD in over half a million cases and 4 million controls.

www.cell.com/cell/fulltex...
Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies
Trans-ancestry GWAS of major depression identifies 697 genetic variants and 308 genes, implicating neural and molecular mechanisms and drug repurposing opportunities.
www.cell.com
January 14, 2025 at 4:10 PM
Reposted by Travis Mallard
Last work tweet of 2024 (maybe 😉): I, Ken Kendler, Brad Verhulst, @jorsmo.bsky.social and @andrewgrotzinger.bsky.social et al in the Psychiatric Genomics Consortium Cross Disorder Group (PGC-CDG) wrote a review on challenges studying cross disorder (psych) genetics: www.nature.com/articles/s41...
Assessment and ascertainment in psychiatric molecular genetics: challenges and opportunities for cross-disorder research - Molecular Psychiatry
Molecular Psychiatry - Assessment and ascertainment in psychiatric molecular genetics: challenges and opportunities for cross-disorder research
www.nature.com
December 27, 2024 at 4:28 PM
Reposted by Travis Mallard
Finally, the DDD outcomes paper is fully published - it took many people and many years, but we definitely had an impact on patient care! Genetic diagnoses changed management for >28% of patients, and connected families with support groups, key resources, and reproductive counseling bit.ly/3Zy0Dpq
December 2, 2024 at 10:40 PM
Reposted by Travis Mallard
📣 Big news! Our tag-team effort on common variants in rare neurodevelopmental conditions is now out in Nature 📣

Co-first authoring with the brilliant Qinqin Huang🌟—proof that teamwork does make the dream work. 💪 www.nature.com/articles/s41...
a couple of cartoon characters standing next to each other with one wearing a purple earring
Alt: a couple of cartoon characters standing next to each other with one wearing a purple earring
media.tenor.com
November 20, 2024 at 4:03 PM
Reposted by Travis Mallard
Just posting this to #popgen
Here's a link to my notes on population & quantitative genetics:
github.com/cooplab/popg...
Hoping to extend it more after the winter holidays, as I'm just finishing up teaching the undergrad version of class.
Releases · cooplab/popgen-notes
Population genetics notes. Contribute to cooplab/popgen-notes development by creating an account on GitHub.
github.com
November 19, 2024 at 11:37 PM
Reposted by Travis Mallard
Lots of new arrivals in the psychiatric and statistical genetics starterpack, time to browse it again to find your old friends go.bsky.app/9643dwo
November 15, 2024 at 7:16 AM