thefirstnuomics.bsky.social
@thefirstnuomics.bsky.social
Genomics, bioinformatics, data science, prog, jazz, guitar, equality, trees
Reposted
Prof. Dame Julia Goodfellow, Prof. Mike Sternberg, Prof. Dame Janet Thornton FRS and Prof. Sir Tom Blundell FRS in festive mood at a celebration of 50 Years of Bioinformatics in honour of Janet
December 18, 2023 at 9:01 AM
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Rishi Sunak’s spokesman says the Prime Minister, who wrote off £4.3 billion worth of fraudulent Covid loans as Chancellor, takes fraud against the Government “extremely seriously”
December 18, 2023 at 12:03 PM
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Kate Andrews *again*?! Are you actually kidding?

Right - time to bust out this article again on #BBCQT bias to rightwing think tanks. 👇👇
An open letter to the BBC
Dr Russell Jackson, senior lecturer in communication and public relations at Sheffield Hallam University, writes to the BBC about Question Time
yorkshirebylines.co.uk
December 13, 2023 at 9:28 PM
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A reminder that the last time Suella Braverman was sacked, Rishi Sunak rehired her after just six days.
November 13, 2023 at 8:56 AM
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Palantir’s founder Peter Thiel, said the NHS ‘makes people sick’ and that it should embrace privatisation.

He even described the British love of the NHS as “Stockholm Syndrome”, and the whole organisation should be ripped up and started again.

—> northeastbylines.co.uk/the-problem-...
The 'problem' with Palantir
Concerning reports about Palantir have surfaced
northeastbylines.co.uk
November 4, 2023 at 6:49 AM
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Boris Johnson believed the UK was being "pathetic" about Covid, and should just have "a cold shower" and "let it rip", according to private messages sent by the Cabinet Secretary Simon Case.
October 30, 2023 at 2:27 PM
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Release of DeepVariant v1.6.

Support for haploid regions, chrX/Y.
Workflow for Pangenome FASTQ-to-VCF.
Major DeepTrio improvements for de novo variants.
Models for CompleteGenomics T7, G400
Add NovaSeqX to training data

Release by Kishwar Shafin

github.com/google/deepv...
Release DeepVariant 1.6.0 · google/deepvariant
Improved support for haploid regions, chrX and chY. Users can specify haploid regions with a flag. Updated case studies show usage and metrics. Added pangenome workflow (FASTQ-to-VCF mapping with V...
github.com
October 26, 2023 at 4:32 PM
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#TheWeekInTory is back, damn you

1. Britain faces a crisis in health, education, farming, energy, housing, childcare, social care, imports, exports, manufacturing, services, debt, growth and infrastructure, so Rishi Sunak announced his grand plan to slightly alter A-Levels
October 25, 2023 at 2:36 PM
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Today we announce the first release of Severus: a new tool for somatic SV calling for long reads! It's designed for complex (and simple) rearrangements in cancer genomes, but also works well for germline github.com/KolmogorovLa...
October 24, 2023 at 4:56 PM
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Initial release of DeepSomatic, which identifies subclonal variants when given tumor and normal BAM files. Pre-trained models and case studies available for Illumina and PacBio. Development led by Kishwar Shafin which built off a framework by Pi-Chuan Chang.

(github.com/google/deeps...)
GitHub - google/deepsomatic
Contribute to google/deepsomatic development by creating an account on GitHub.
github.com
October 24, 2023 at 4:53 PM
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If you care about the food (and non-food) that you eat, you may well find this conversation with physician-scientist Chris Can Tulleken of interest. His new, deeply researched book ULTRA-PROCESSED PEOPLE is outstanding

erictopol.substack.com/p/the-scienc...
October 25, 2023 at 8:32 PM
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Really good blog post from Ryan (as always) on latest ONT accuracy rrwick.github.io/2023/10/24/o...
October 25, 2023 at 1:34 PM
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UKHSA and ONS launch new Winter COVID-19 Infection Study, using lateral flow tests

www.gov.uk/government/n...
UKHSA and ONS launch new Winter COVID-19 Infection Study
A study to gather vital data on COVID-19 this winter has been launched by the UK Health Security Agency (UKHSA) and the Office for National Statistics (ONS).
www.gov.uk
October 2, 2023 at 6:58 PM